ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23m11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475575.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1230 Score = 127 bits (64), Expect = 6e-26 Identities = 184/224 (82%) Strand = Plus / Minus Query: 174 ctatggtgccaacatcacccaagcctacaccaatgcagatgggactgttcttctgtacag 233 |||||||||||||||| | || |||| || ||| ||| |||| | ||||||||| ||| Sbjct: 1180 ctatggtgccaacatcctctaacactactccgatgaagaggggattcttcttctgtgcag 1121 Query: 234 agccctcactccgaagccgcacatttgggcccagaccgcatttccccaagcatttgcatc 293 ||| || ||||| ||||||||||| ||||| |||||||||||||||| ||||||||| | Sbjct: 1120 cgccttcgctccggagccgcacattcgggcctagaccgcatttccccaggcatttgcagc 1061 Query: 294 cgaccaccgtgccgcccatgccaagctccgtctcaaactcctgcaggacggcaagcgagc 353 | || |||| || | |||| | || | |||| ||||||||||| || || || |||| Sbjct: 1060 caacgaccgcaccatcagtgcccaccttcttctcgaactcctgcagcaccgcgagggagc 1001 Query: 354 ccgccttcttgcatttgccacccatgcagacctcaattctgttc 397 ||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 1000 ccgatttcttgcatttgcctcccatgcagacctcaattctgttc 957 Score = 44.1 bits (22), Expect = 0.66 Identities = 37/42 (88%) Strand = Plus / Minus Query: 625 gctgtcttcatccttgcaggaattcagtgtggccatcctctt 666 ||||||||||||||||||| | ||| |||||||||| |||| Sbjct: 717 gctgtcttcatccttgcagagagtcaatgtggccatcttctt 676
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 127 bits (64), Expect = 6e-26 Identities = 184/224 (82%) Strand = Plus / Minus Query: 174 ctatggtgccaacatcacccaagcctacaccaatgcagatgggactgttcttctgtacag 233 |||||||||||||||| | || |||| || ||| ||| |||| | ||||||||| ||| Sbjct: 2113587 ctatggtgccaacatcctctaacactactccgatgaagaggggattcttcttctgtgcag 2113528 Query: 234 agccctcactccgaagccgcacatttgggcccagaccgcatttccccaagcatttgcatc 293 ||| || ||||| ||||||||||| ||||| |||||||||||||||| ||||||||| | Sbjct: 2113527 cgccttcgctccggagccgcacattcgggcctagaccgcatttccccaggcatttgcagc 2113468 Query: 294 cgaccaccgtgccgcccatgccaagctccgtctcaaactcctgcaggacggcaagcgagc 353 | || |||| || | |||| | || | |||| ||||||||||| || || || |||| Sbjct: 2113467 caacgaccgcaccatcagtgcccaccttcttctcgaactcctgcagcaccgcgagggagc 2113408 Query: 354 ccgccttcttgcatttgccacccatgcagacctcaattctgttc 397 ||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 2113407 ccgatttcttgcatttgcctcccatgcagacctcaattctgttc 2113364 Score = 44.1 bits (22), Expect = 0.66 Identities = 37/42 (88%) Strand = Plus / Minus Query: 625 gctgtcttcatccttgcaggaattcagtgtggccatcctctt 666 ||||||||||||||||||| | ||| |||||||||| |||| Sbjct: 2113124 gctgtcttcatccttgcagagagtcaatgtggccatcttctt 2113083
>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08, complete sequence Length = 112268 Score = 127 bits (64), Expect = 6e-26 Identities = 184/224 (82%) Strand = Plus / Minus Query: 174 ctatggtgccaacatcacccaagcctacaccaatgcagatgggactgttcttctgtacag 233 |||||||||||||||| | || |||| || ||| ||| |||| | ||||||||| ||| Sbjct: 80428 ctatggtgccaacatcctctaacactactccgatgaagaggggattcttcttctgtgcag 80369 Query: 234 agccctcactccgaagccgcacatttgggcccagaccgcatttccccaagcatttgcatc 293 ||| || ||||| ||||||||||| ||||| |||||||||||||||| ||||||||| | Sbjct: 80368 cgccttcgctccggagccgcacattcgggcctagaccgcatttccccaggcatttgcagc 80309 Query: 294 cgaccaccgtgccgcccatgccaagctccgtctcaaactcctgcaggacggcaagcgagc 353 | || |||| || | |||| | || | |||| ||||||||||| || || || |||| Sbjct: 80308 caacgaccgcaccatcagtgcccaccttcttctcgaactcctgcagcaccgcgagggagc 80249 Query: 354 ccgccttcttgcatttgccacccatgcagacctcaattctgttc 397 ||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 80248 ccgatttcttgcatttgcctcccatgcagacctcaattctgttc 80205 Score = 44.1 bits (22), Expect = 0.66 Identities = 37/42 (88%) Strand = Plus / Minus Query: 625 gctgtcttcatccttgcaggaattcagtgtggccatcctctt 666 ||||||||||||||||||| | ||| |||||||||| |||| Sbjct: 79965 gctgtcttcatccttgcagagagtcaatgtggccatcttctt 79924
>dbj|AK067812.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114P12, full insert sequence Length = 1497 Score = 121 bits (61), Expect = 4e-24 Identities = 148/177 (83%) Strand = Plus / Minus Query: 221 ttcttctgtacagagccctcactccgaagccgcacatttgggcccagaccgcatttcccc 280 ||||||||| ||| ||| || ||||| ||||||||||| ||||| ||||||||||||||| Sbjct: 1245 ttcttctgtgcagcgccttcgctccggagccgcacattcgggcctagaccgcatttcccc 1186 Query: 281 aagcatttgcatccgaccaccgtgccgcccatgccaagctccgtctcaaactcctgcagg 340 | ||||||||| || || |||| || | |||| | || | |||| ||||||||||| Sbjct: 1185 aggcatttgcagccaacgaccgcaccatcagtgcccaccttcttctcgaactcctgcagc 1126 Query: 341 acggcaagcgagcccgccttcttgcatttgccacccatgcagacctcaattctgttc 397 || || || ||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 1125 accgcgagggagcccgatttcttgcatttgcctcccatgcagacctcaattctgttc 1069 Score = 44.1 bits (22), Expect = 0.66 Identities = 37/42 (88%) Strand = Plus / Minus Query: 625 gctgtcttcatccttgcaggaattcagtgtggccatcctctt 666 ||||||||||||||||||| | ||| |||||||||| |||| Sbjct: 829 gctgtcttcatccttgcagagagtcaatgtggccatcttctt 788
>gb|AY104219.1| Zea mays PCO130396 mRNA sequence Length = 960 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Minus Query: 324 tctcaaactcctgcaggacggcaagcgagcccgccttcttgcatttgccacccatgcaga 383 |||| ||||||||||| | |||| || ||| | ||||||||||||||| |||||||||| Sbjct: 545 tctcgaactcctgcagaagagcaaccgcgcctgacttcttgcatttgccccccatgcaga 486 Query: 384 cctcaattctg 394 ||||||||||| Sbjct: 485 cctcaattctg 475 Score = 46.1 bits (23), Expect = 0.17 Identities = 38/43 (88%) Strand = Plus / Minus Query: 170 gccactatggtgccaacatcacccaagcctacaccaatgcaga 212 ||||| |||||||||||||| | ||||||||||| ||||||| Sbjct: 708 gccacgatggtgccaacatcttcaaagcctacaccgatgcaga 666
>gb|AF123432.1|AF123432 Bovine enterovirus isolate K2577, complete genome Length = 7405 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 117 caggtccaggttcgtatcagttc 139 ||||||||||||||||||||||| Sbjct: 1780 caggtccaggttcgtatcagttc 1802
>emb|Z58203.1|HS32A8F H.sapiens CpG island DNA genomic Mse1 fragment, clone 32a8, forward read cpg32a8.ft1a Length = 270 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 585 ccccttcacactcactgttgct 606 |||||||||||||||||||||| Sbjct: 90 ccccttcacactcactgttgct 69
>emb|BX470072.8| Zebrafish DNA sequence from clone DKEY-163I6 in linkage group 21, complete sequence Length = 211164 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 393 tgttcagcactggtttttcaa 413 ||||||||||||||||||||| Sbjct: 195523 tgttcagcactggtttttcaa 195503 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,132,507 Number of Sequences: 3902068 Number of extensions: 6132507 Number of successful extensions: 282161 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 282104 Number of HSP's gapped (non-prelim): 54 length of query: 751 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 728 effective length of database: 17,143,297,704 effective search space: 12480320728512 effective search space used: 12480320728512 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
