ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478377.1| Oryza sativa (japonica cultivar-group), mRNA 220 2e-54
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 220 2e-54
3dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic D... 220 2e-54
4dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic D... 220 2e-54
5dbj|AK105071.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 2e-54
6dbj|AK072104.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 2e-54
7dbj|AK064835.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 2e-54
8gb|AY108268.1| Zea mays PCO078526 mRNA sequence 184 1e-43
9gb|AC087888.12| Homo sapiens 12 BAC RP11-228G3 (Roswell Park Can... 48 0.016
10gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.99
11gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome ... 42 0.99
12gb|AC125536.3| Mus musculus BAC clone RP24-142N21 from chromosom... 42 0.99
13emb|BX323064.13| Zebrafish DNA sequence from clone DKEYP-13D12 i... 42 0.99
14emb|AL158817.11| Human DNA sequence from clone RP3-429O6 on chro... 42 0.99
15gb|AY267622.1| Bigelowiella natans ATP synthase gamma subunit mR... 42 0.99
16gb|AC068298.16| Homo sapiens 3 BAC RP11-496B10 (Roswell Park Can... 42 0.99
17gb|AC118139.3| Homo sapiens BAC clone RP11-461K12 from 4, comple... 42 0.99
18gb|AC107365.2| Danio rerio, clone -241I7, complete sequence 42 0.99
19dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.99
20emb|BX294377.10| Zebrafish DNA sequence from clone DKEY-21K19 in... 42 0.99
21emb|AL954146.8| Zebrafish DNA sequence from clone CH211-213I6 in... 42 0.99
22gb|AF088219.1|AF088219 Homo sapiens CC chemokine gene cluster, c... 42 0.99
23emb|CR788316.12| Zebrafish DNA sequence from clone CH211-161M3 i... 42 0.99
24emb|CR382300.12| Zebrafish DNA sequence from clone DKEY-25E11 in... 42 0.99
25gb|AC006572.2|AC006572 Homo sapiens, clone hRPK.60_A_1, complete... 42 0.99
26gb|AC004675.1|AC004675 Homo sapiens chromosome 17, clone hCIT.18... 42 0.99
27gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 3.9
28gb|AC126686.3| Mus musculus BAC clone RP23-148C24 from 18, compl... 40 3.9
29gb|AC118351.14| Rattus norvegicus 1 BAC CH230-362O18 (Children's... 40 3.9
30emb|AL365214.16| Human DNA sequence from clone RP11-506B6 on chr... 40 3.9
31gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 3.9
32gb|AC006454.4| Homo sapiens PAC clone RP5-852P6 from 7, complete... 40 3.9
33emb|BX890550.10| Zebrafish DNA sequence from clone DKEYP-110B6 i... 40 3.9
34emb|AL663033.10| Mouse DNA sequence from clone RP23-78H18 on chr... 40 3.9
35gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, com... 40 3.9
36gb|AC073761.4| Mus musculus chromosome 17 clone RP23-33K21, comp... 40 3.9
37gb|AC092745.7| Homo sapiens 12 BAC RP11-90D4 (Roswell Park Cance... 40 3.9
38gb|AC092111.9| Homo sapiens 12 BAC RP11-266K4 (Roswell Park Canc... 40 3.9
39dbj|AB232920.1| Oryzias latipes hox gene cluster, complete cds, ... 40 3.9
40gb|AC175781.3| Cavia porcellus clone CH234-402D11, complete sequ... 40 3.9
41gb|AC122754.13| Mus musculus chromosome 1, clone RP24-510K10, co... 40 3.9
42gb|AC012336.9|AC012336 Homo sapiens chromosome 17, clone CTD-223... 40 3.9
43dbj|AK043901.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 40 3.9
44dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
45gb|AC105916.4| Homo sapiens BAC clone RP11-180A12 from 4, comple... 40 3.9
46emb|AL929073.19| Mouse DNA sequence from clone RP23-125D6 on chr... 40 3.9
47dbj|AP005611.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
48emb|AL512357.4|CNS07EF6 Human chromosome 14 DNA sequence BAC R-2... 40 3.9
49emb|AL954669.8| Zebrafish DNA sequence from clone DKEY-81J5, com... 40 3.9
50gb|AC154142.24| Mus musculus chromosome 1, clone RP23-187M7, com... 40 3.9
51emb|AL845291.5| Mouse DNA sequence from clone RP23-1O11 on chrom... 40 3.9
52dbj|AB032374.1| Mus musculus gene for Tbr1, 5' flanking region 40 3.9
53dbj|AB015309.1| Acidovorax sp. TP4 gene for PHB depolymerase, co... 40 3.9 
>ref|XM_478377.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1469

 Score =  220 bits (111), Expect = 2e-54
 Identities = 153/167 (91%)
 Strand = Plus / Minus

                                                                        
Query: 120  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 179
            |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 1119 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 1060

                                                                        
Query: 180  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 239
            || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1059 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 1000

                                                           
Query: 240  atggcgctcatcctggctgcgagctcgctagcgagcgactcctggag 286
            ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 999  atggcgctcatcctggcggcgagctcgctggcgagcgactcctggag 953
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  220 bits (111), Expect = 2e-54
 Identities = 153/167 (91%)
 Strand = Plus / Plus

                                                                            
Query: 120      agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 179
                |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 19602762 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 19602821

                                                                            
Query: 180      cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 239
                || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 19602822 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 19602881

                                                               
Query: 240      atggcgctcatcctggctgcgagctcgctagcgagcgactcctggag 286
                ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 19602882 atggcgctcatcctggcggcgagctcgctggcgagcgactcctggag 19602928
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>dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0580A11
          Length = 174673

 Score =  220 bits (111), Expect = 2e-54
 Identities = 153/167 (91%)
 Strand = Plus / Plus

                                                                          
Query: 120    agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 179
              |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 146106 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 146165

                                                                          
Query: 180    cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 239
              || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 146166 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 146225

                                                             
Query: 240    atggcgctcatcctggctgcgagctcgctagcgagcgactcctggag 286
              ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 146226 atggcgctcatcctggcggcgagctcgctggcgagcgactcctggag 146272
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>dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0041J06
          Length = 138157

 Score =  220 bits (111), Expect = 2e-54
 Identities = 153/167 (91%)
 Strand = Plus / Plus

                                                                         
Query: 120   agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 179
             |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 41412 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 41471

                                                                         
Query: 180   cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 239
             || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 41472 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 41531

                                                            
Query: 240   atggcgctcatcctggctgcgagctcgctagcgagcgactcctggag 286
             ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 41532 atggcgctcatcctggcggcgagctcgctggcgagcgactcctggag 41578
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>dbj|AK105071.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C11, full
            insert sequence
          Length = 2822

 Score =  220 bits (111), Expect = 2e-54
 Identities = 153/167 (91%)
 Strand = Plus / Minus

                                                                        
Query: 120  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 179
            |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 2584 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 2525

                                                                        
Query: 180  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 239
            || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 2524 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 2465

                                                           
Query: 240  atggcgctcatcctggctgcgagctcgctagcgagcgactcctggag 286
            ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 2464 atggcgctcatcctggcggcgagctcgctggcgagcgactcctggag 2418
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>dbj|AK072104.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116B21, full
            insert sequence
          Length = 1470

 Score =  220 bits (111), Expect = 2e-54
 Identities = 153/167 (91%)
 Strand = Plus / Minus

                                                                        
Query: 120  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 179
            |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 1119 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 1060

                                                                        
Query: 180  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 239
            || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1059 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 1000

                                                           
Query: 240  atggcgctcatcctggctgcgagctcgctagcgagcgactcctggag 286
            ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 999  atggcgctcatcctggcggcgagctcgctggcgagcgactcctggag 953
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>dbj|AK064835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F20, full
            insert sequence
          Length = 1482

 Score =  220 bits (111), Expect = 2e-54
 Identities = 153/167 (91%)
 Strand = Plus / Minus

                                                                        
Query: 120  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 179
            |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 1224 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 1165

                                                                        
Query: 180  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 239
            || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1164 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 1105

                                                           
Query: 240  atggcgctcatcctggctgcgagctcgctagcgagcgactcctggag 286
            ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 1104 atggcgctcatcctggcggcgagctcgctggcgagcgactcctggag 1058
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>gb|AY108268.1| Zea mays PCO078526 mRNA sequence
          Length = 1437

 Score =  184 bits (93), Expect = 1e-43
 Identities = 153/173 (88%)
 Strand = Plus / Minus

                                                                        
Query: 120  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 179
            ||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||  | 
Sbjct: 1168 agggcgtcggcaccggcgacgatctcgaggatctccccggtgatcttggcctggcgctgt 1109

                                                                        
Query: 180  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 239
            || |||||| | |||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1108 cggttgtaggcgatggagaggttcttgcggagctcgatggcgttgtcggtggcgctgctc 1049

                                                                 
Query: 240  atggcgctcatcctggctgcgagctcgctagcgagcgactcctggagggcacg 292
            ||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||
Sbjct: 1048 atggcgctcatccgggcggcgagctcgctggcgagcgactcctgcagggcacg 996
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>gb|AC087888.12| Homo sapiens 12 BAC RP11-228G3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 87788

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 60    aaggaggcaaagagttatatataa 83
             ||||||||||||||||||||||||
Sbjct: 75558 aaggaggcaaagagttatatataa 75535
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>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05,
              complete sequence
          Length = 153368

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 46     agaagagaggagaaaaggagg 66
              |||||||||||||||||||||
Sbjct: 140157 agaagagaggagaaaaggagg 140177
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>gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome 8, complete sequence
          Length = 218698

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 46    agaagagaggagaaaaggagg 66
             |||||||||||||||||||||
Sbjct: 15174 agaagagaggagaaaaggagg 15194
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>gb|AC125536.3| Mus musculus BAC clone RP24-142N21 from chromosome 8, complete
            sequence
          Length = 199356

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 46   agaagagaggagaaaaggagg 66
            |||||||||||||||||||||
Sbjct: 3705 agaagagaggagaaaaggagg 3685
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>emb|BX323064.13| Zebrafish DNA sequence from clone DKEYP-13D12 in linkage group 2,
             complete sequence
          Length = 170480

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 12    aaacacagacacagcaccaagcaag 36
             ||||||| |||||||||||||||||
Sbjct: 51107 aaacacacacacagcaccaagcaag 51083
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>emb|AL158817.11| Human DNA sequence from clone RP3-429O6 on chromosome 6 Contains part
             of a novel gene and a CpG island, complete sequence
          Length = 120529

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 49    agagaggagaaaaggaggcaaagag 73
             |||||||||||||||||| ||||||
Sbjct: 57721 agagaggagaaaaggaggaaaagag 57697
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>gb|AY267622.1| Bigelowiella natans ATP synthase gamma subunit mRNA, complete cds;
            nuclear gene for plastid product
          Length = 1351

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 123  gcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcg 175
            ||||| || ||||||||||||||||| || ||   ||||||||| ||||||||
Sbjct: 1174 gcgtctgcaccagcgacgatctcaagaatttcattggtgatcttagcctggcg 1122
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>gb|AC068298.16| Homo sapiens 3 BAC RP11-496B10 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 180335

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 50   gagaggagaaaaggaggcaaa 70
            |||||||||||||||||||||
Sbjct: 8264 gagaggagaaaaggaggcaaa 8244
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>gb|AC118139.3| Homo sapiens BAC clone RP11-461K12 from 4, complete sequence
          Length = 54171

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  agaagagaggagaaaaggagg 66
           |||||||||||||||||||||
Sbjct: 459 agaagagaggagaaaaggagg 479
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>gb|AC107365.2| Danio rerio, clone -241I7, complete sequence
          Length = 128411

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 46     agaagagaggagaaaaggagg 66
              |||||||||||||||||||||
Sbjct: 127553 agaagagaggagaaaaggagg 127533
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 46       agaagagaggagaaaaggagg 66
                |||||||||||||||||||||
Sbjct: 18346945 agaagagaggagaaaaggagg 18346965
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>emb|BX294377.10| Zebrafish DNA sequence from clone DKEY-21K19 in linkage group 8,
             complete sequence
          Length = 197191

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 10    acaaacacagacacagcaccaagca 34
             ||||||||| |||||||||||||||
Sbjct: 51006 acaaacacacacacagcaccaagca 51030
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>emb|AL954146.8| Zebrafish DNA sequence from clone CH211-213I6 in linkage group 17,
              complete sequence
          Length = 207669

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 12     aaacacagacacagcaccaagcaag 36
              ||||||| |||||||||||||||||
Sbjct: 156698 aaacacacacacagcaccaagcaag 156674
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>gb|AF088219.1|AF088219 Homo sapiens CC chemokine gene cluster, complete sequence
          Length = 180919

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    gataagtactagaagagagga 56
             |||||||||||||||||||||
Sbjct: 90350 gataagtactagaagagagga 90330
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>emb|CR788316.12| Zebrafish DNA sequence from clone CH211-161M3 in linkage group 4,
              complete sequence
          Length = 139201

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 10     acaaacacagacacagcaccaagca 34
              ||||||||| |||||||||||||||
Sbjct: 112709 acaaacacacacacagcaccaagca 112685
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>emb|CR382300.12| Zebrafish DNA sequence from clone DKEY-25E11 in linkage group 19,
             complete sequence
          Length = 202006

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 46    agaagagaggagaaaaggagg 66
             |||||||||||||||||||||
Sbjct: 35716 agaagagaggagaaaaggagg 35736
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>gb|AC006572.2|AC006572 Homo sapiens, clone hRPK.60_A_1, complete sequence
          Length = 179691

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 46     agaagagaggagaaaaggagg 66
              |||||||||||||||||||||
Sbjct: 178150 agaagagaggagaaaaggagg 178170
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>gb|AC004675.1|AC004675 Homo sapiens chromosome 17, clone hCIT.186_H_2, complete sequence
          Length = 128501

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 36    gataagtactagaagagagga 56
             |||||||||||||||||||||
Sbjct: 88143 gataagtactagaagagagga 88163
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 232     cgctgctcatggcgctcatc 251
               ||||||||||||||||||||
Sbjct: 2764884 cgctgctcatggcgctcatc 2764903
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>gb|AC126686.3| Mus musculus BAC clone RP23-148C24 from 18, complete sequence
          Length = 232817

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    aggagaaaaggaggcaaaga 72
             ||||||||||||||||||||
Sbjct: 78802 aggagaaaaggaggcaaaga 78783
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>gb|AC118351.14| Rattus norvegicus 1 BAC CH230-362O18 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 143705

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     ggagaaaaggaggcaaagag 73
              ||||||||||||||||||||
Sbjct: 125135 ggagaaaaggaggcaaagag 125116
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>emb|AL365214.16| Human DNA sequence from clone RP11-506B6 on chromosome 6 Contains a fem-1
              homolog a (C. elegans) (FEM1A) pseudogene, a keratin 18
              (KRT18) pseudogene, a laminin receptor 1 (67kD, ribosomal
              protein SA) (LAMR1)(RPSA) pseudogene, a hepatocellular
              carcinoma-related putative tumor suppressor (LPTS)
              pseudogene and the 3' end of a novel gene, complete
              sequence
          Length = 210107

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     tactagaagagaggagaaaa 61
              ||||||||||||||||||||
Sbjct: 191747 tactagaagagaggagaaaa 191728
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 119     cagggcgtcggcgccagcga 138
               ||||||||||||||||||||
Sbjct: 1196169 cagggcgtcggcgccagcga 1196188
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>gb|AC006454.4| Homo sapiens PAC clone RP5-852P6 from 7, complete sequence
          Length = 153203

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    gcagctcagcccagggagga 108
             ||||||||||||||||||||
Sbjct: 13876 gcagctcagcccagggagga 13857
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>emb|BX890550.10| Zebrafish DNA sequence from clone DKEYP-110B6 in linkage group 13,
             complete sequence
          Length = 174313

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    acacagacacagcaccaagc 33
             ||||||||||||||||||||
Sbjct: 61225 acacagacacagcaccaagc 61206
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>emb|AL663033.10| Mouse DNA sequence from clone RP23-78H18 on chromosome 11 Contains the
             5' end of a novel gene (2410004F01Rik), a novel gene, part
             of a novel gene (9630013K17Rik), a novel gene and a CpG
             island, complete sequence
          Length = 126191

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     ttacaaacacagacacagca 27
             ||||||||||||||||||||
Sbjct: 21191 ttacaaacacagacacagca 21210
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>gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, complete sequence
          Length = 181022

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    gaagagaggagaaaaggagg 66
             ||||||||||||||||||||
Sbjct: 27254 gaagagaggagaaaaggagg 27235
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>gb|AC073761.4| Mus musculus chromosome 17 clone RP23-33K21, complete sequence
          Length = 206801

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 51   agaggagaaaaggaggcaaagagt 74
            ||||||||||||||| ||||||||
Sbjct: 3628 agaggagaaaaggagtcaaagagt 3605
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>gb|AC092745.7| Homo sapiens 12 BAC RP11-90D4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152599

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   ctcatggcgctcatcctggc 256
             ||||||||||||||||||||
Sbjct: 39643 ctcatggcgctcatcctggc 39624
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>gb|AC092111.9| Homo sapiens 12 BAC RP11-266K4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 138313

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    ctcatggcgctcatcctggc 256
              ||||||||||||||||||||
Sbjct: 114733 ctcatggcgctcatcctggc 114714
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>dbj|AB232920.1| Oryzias latipes hox gene cluster, complete cds, contains hoxBa, evx
             homologue on hoxBa
          Length = 235883

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    agaagagaggagaaaaggag 65
             ||||||||||||||||||||
Sbjct: 76918 agaagagaggagaaaaggag 76937
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>gb|AC175781.3| Cavia porcellus clone CH234-402D11, complete sequence
          Length = 183894

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    gaagagaggagaaaaggagg 66
             ||||||||||||||||||||
Sbjct: 48112 gaagagaggagaaaaggagg 48131
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>gb|AC122754.13| Mus musculus chromosome 1, clone RP24-510K10, complete sequence
          Length = 227950

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     gaaaaggaggcaaagagtta 76
              ||||||||||||||||||||
Sbjct: 105449 gaaaaggaggcaaagagtta 105468
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>gb|AC012336.9|AC012336 Homo sapiens chromosome 17, clone CTD-2236G12, complete sequence
          Length = 40405

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    gaagagaggagaaaaggagg 66
             ||||||||||||||||||||
Sbjct: 10132 gaagagaggagaaaaggagg 10151
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>dbj|AK043901.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
           enriched library, clone:A830048L15
           product:unclassifiable, full insert sequence
          Length = 1373

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 48  aagagaggagaaaaggaggcaaag 71
           |||||||||||| |||||||||||
Sbjct: 729 aagagaggagaagaggaggcaaag 706
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 44       ctagaagagaggagaaaagg 63
                ||||||||||||||||||||
Sbjct: 20600956 ctagaagagaggagaaaagg 20600937
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>gb|AC105916.4| Homo sapiens BAC clone RP11-180A12 from 4, complete sequence
          Length = 104269

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    ggcagctcagcccagggagg 107
             ||||||||||||||||||||
Sbjct: 81855 ggcagctcagcccagggagg 81874
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>emb|AL929073.19| Mouse DNA sequence from clone RP23-125D6 on chromosome 4, complete
             sequence
          Length = 129246

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    gaagagaggagaaaaggagg 66
             ||||||||||||||||||||
Sbjct: 16741 gaagagaggagaaaaggagg 16760
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>dbj|AP005611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0051E21
          Length = 137959

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    ctagaagagaggagaaaagg 63
             ||||||||||||||||||||
Sbjct: 96514 ctagaagagaggagaaaagg 96495
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>emb|AL512357.4|CNS07EF6 Human chromosome 14 DNA sequence BAC R-260M19 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 174612

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    cagcaccaagcaagataagt 42
             ||||||||||||||||||||
Sbjct: 42758 cagcaccaagcaagataagt 42739
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>emb|AL954669.8| Zebrafish DNA sequence from clone DKEY-81J5, complete sequence
          Length = 133954

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 12     aaacacagacacagcaccaagcaa 35
              ||||||| ||||||||||||||||
Sbjct: 114359 aaacacacacacagcaccaagcaa 114336
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>gb|AC154142.24| Mus musculus chromosome 1, clone RP23-187M7, complete sequence
          Length = 237824

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     gaaaaggaggcaaagagtta 76
              ||||||||||||||||||||
Sbjct: 188353 gaaaaggaggcaaagagtta 188372
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>emb|AL845291.5| Mouse DNA sequence from clone RP23-1O11 on chromosome 2, complete
              sequence
          Length = 209914

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 48     aagagaggagaaaaggaggcaaag 71
              |||||||||||| |||||||||||
Sbjct: 178379 aagagaggagaagaggaggcaaag 178356
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>dbj|AB032374.1| Mus musculus gene for Tbr1, 5' flanking region
          Length = 4570

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 48   aagagaggagaaaaggaggcaaag 71
            |||||||||||| |||||||||||
Sbjct: 3905 aagagaggagaagaggaggcaaag 3882
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>dbj|AB015309.1| Acidovorax sp. TP4 gene for PHB depolymerase, complete cds
          Length = 3846

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  gtggcgctgctcatggcgct 247
            ||||||||||||||||||||
Sbjct: 2294 gtggcgctgctcatggcgct 2313


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,904,365
Number of Sequences: 3902068
Number of extensions: 2904365
Number of successful extensions: 65930
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 65727
Number of HSP's gapped (non-prelim): 204
length of query: 297
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 275
effective length of database: 17,147,199,772
effective search space: 4715479937300
effective search space used: 4715479937300
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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