ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IM30_ORYSA (Q8S0J7) Probable membrane-associated 30 kDa protein,... 136 1e-46
2IM30_PEA (Q03943) Membrane-associated 30 kDa protein, chloroplas... 139 8e-43
3IM30_ARATH (O80796) Probable membrane-associated 30 kDa protein,... 117 4e-39
4Y617_SYNY3 (Q55707) Hypothetical protein sll0617 80 5e-15
5PSPA_DEIRA (Q9RUB7) Phage shock protein A homolog 46 1e-04
6PSPA_BACSU (P54617) Phage shock protein A homolog 42 0.001
7AG84_MYCTU (P0A5N2) Antigen 84 32 1.3
8AG84_MYCBO (P0A5N3) Antigen 84 32 1.3
9STCK_EMENI (Q00706) Putative sterigmatocystin biosynthesis fatty... 31 3.8
10EKC1_SCHPO (O74511) Extragenic suppressor of kinetochore protein 1 30 5.0
11SMG5_HUMAN (Q9UPR3) Protein SMG5 (SMG-5 homolog) (EST1-like prot... 30 5.0
12TRUB_PSEF5 (Q4KIF4) tRNA pseudouridine synthase B (EC 5.4.99.-) ... 30 8.5
13POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 30 8.5
14TAF12_YEAST (Q03761) Transcription initiation factor TFIID subun... 30 8.5

>IM30_ORYSA (Q8S0J7) Probable membrane-associated 30 kDa protein, chloroplast|
           precursor
          Length = 317

 Score =  136 bits (343), Expect(2) = 1e-46
 Identities = 71/79 (89%), Positives = 75/79 (94%)
 Frame = -1

Query: 666 ESKIAEARQKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEAL 487
           ESKIAEA+QKKDTLKARAQSAKT+TKVSEMLGNVNTS ALSAFEKMEEKVM MESQAEAL
Sbjct: 183 ESKIAEAKQKKDTLKARAQSAKTSTKVSEMLGNVNTSGALSAFEKMEEKVMAMESQAEAL 242

Query: 486 GQLGADDLEGKFAMLETTS 430
           GQL  DDLEGKFA+LET+S
Sbjct: 243 GQLATDDLEGKFALLETSS 261



 Score = 70.1 bits (170), Expect(2) = 1e-46
 Identities = 38/61 (62%), Positives = 43/61 (70%), Gaps = 8/61 (13%)
 Frame = -2

Query: 443 LRLHRVDDDLAQMRKELSGSSLKGELPQGRTATP--------RDRDIERELNELREKAND 288
           L    VDDDLAQM+KE+SGSS KGELP GRTA          RD +IE ELNELR+KAN+
Sbjct: 257 LETSSVDDDLAQMKKEISGSSSKGELPPGRTAVSNSGAARPFRDIEIENELNELRKKANE 316

Query: 287 Y 285
           Y
Sbjct: 317 Y 317



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>IM30_PEA (Q03943) Membrane-associated 30 kDa protein, chloroplast precursor|
           (M30)
          Length = 323

 Score =  139 bits (349), Expect(2) = 8e-43
 Identities = 74/79 (93%), Positives = 75/79 (94%)
 Frame = -1

Query: 666 ESKIAEARQKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEAL 487
           ESKI EAR KKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEAL
Sbjct: 186 ESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEAL 245

Query: 486 GQLGADDLEGKFAMLETTS 430
           GQL  DDLEGKFAMLET+S
Sbjct: 246 GQLTTDDLEGKFAMLETSS 264



 Score = 55.1 bits (131), Expect(2) = 8e-43
 Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 11/63 (17%)
 Frame = -2

Query: 443 LRLHRVDDDLAQMRKELSGSSLKGELPQGRTATP-----------RDRDIERELNELREK 297
           L    VDDDLA ++KEL+GSS KGELP GR++T            RD DIE EL +LR++
Sbjct: 260 LETSSVDDDLANLKKELAGSSKKGELPPGRSSTTSTTSTKTGNPFRDADIEIELEQLRKR 319

Query: 296 AND 288
           + +
Sbjct: 320 SKE 322



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>IM30_ARATH (O80796) Probable membrane-associated 30 kDa protein, chloroplast|
           precursor
          Length = 330

 Score =  117 bits (293), Expect(2) = 4e-39
 Identities = 60/79 (75%), Positives = 69/79 (87%)
 Frame = -1

Query: 666 ESKIAEARQKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEAL 487
           ESKI EA+ KKDTL ARA++AKTATKV EM+G VNTS ALSAFEKMEEKVM MES+A+AL
Sbjct: 197 ESKIQEAKAKKDTLLARARTAKTATKVQEMIGTVNTSGALSAFEKMEEKVMAMESEADAL 256

Query: 486 GQLGADDLEGKFAMLETTS 430
            Q+G D+LEGKF MLET+S
Sbjct: 257 TQIGTDELEGKFQMLETSS 275



 Score = 64.3 bits (155), Expect(2) = 4e-39
 Identities = 34/60 (56%), Positives = 40/60 (66%), Gaps = 7/60 (11%)
 Frame = -2

Query: 443 LRLHRVDDDLAQMRKELSGSSLKGELPQGRTATP-------RDRDIERELNELREKANDY 285
           L    VDDDLA ++KELSGSS KGELP GR+          +D +IE ELNELR KAND+
Sbjct: 271 LETSSVDDDLADLKKELSGSSKKGELPPGRSTVAASTRYPFKDSEIENELNELRRKANDF 330



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>Y617_SYNY3 (Q55707) Hypothetical protein sll0617|
          Length = 267

 Score = 80.1 bits (196), Expect = 5e-15
 Identities = 39/80 (48%), Positives = 59/80 (73%)
 Frame = -1

Query: 666 ESKIAEARQKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEAL 487
           E+KI+EA+ KK+ L+ARA++AK   ++ + LG + TSSA SAFE+ME KV+ ME+ ++A 
Sbjct: 126 EAKISEAKTKKNMLQARAKAAKANAELQQTLGGLGTSSATSAFERMENKVLDMEATSQAA 185

Query: 486 GQLGADDLEGKFAMLETTSG 427
           G+L    +E +FA LE +SG
Sbjct: 186 GELAGFGIENQFAQLEASSG 205



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>PSPA_DEIRA (Q9RUB7) Phage shock protein A homolog|
          Length = 223

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 24/66 (36%), Positives = 37/66 (56%)
 Frame = -1

Query: 666 ESKIAEARQKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEAL 487
           E+KI E   KK  L AR ++A+    +  + G      A+ AF +ME+KV  ME + +A+
Sbjct: 126 EAKIDEMESKKTLLAARQKTAQAGETLDRVSGFSKAGGAMDAFNEMEQKVAGMEDRNKAM 185

Query: 486 GQLGAD 469
           G+L  D
Sbjct: 186 GELRND 191



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>PSPA_BACSU (P54617) Phage shock protein A homolog|
          Length = 226

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
 Frame = -1

Query: 663 SKIAEARQKKDTLKARAQSAKTATKVSEMLGNVN-TSSALSAFEKMEEKVMTMESQAEAL 487
           S I E   +K+ +KA+   AKT  +++++  +V+ TS ++SAF +ME+KV     QA A+
Sbjct: 126 SDIGELEARKNMIKAKWAVAKTQERMNKLGASVSSTSQSMSAFGRMEDKVNKALDQANAM 185

Query: 486 GQLGA---DDLEGKFAMLET 436
            +L +   DD+    A  +T
Sbjct: 186 AELNSAPQDDMADLSAKYDT 205



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>AG84_MYCTU (P0A5N2) Antigen 84|
          Length = 260

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 27/92 (29%)
 Frame = -1

Query: 666 ESKIAEARQKKDTLKARAQS-----------------AKTATKVSEMLGNVNTSSA---- 550
           ++ +AEARQ+ D + A AQS                 A    K SE++G +N   A    
Sbjct: 148 DATVAEARQRADAMLADAQSRSEAQLRQAQEKADALQADAERKHSEIMGTINQQRAVLEG 207

Query: 549 -LSAFEKMEEKVMT-----MESQAEALGQLGA 472
            L      E +  T     +ESQ E LGQ G+
Sbjct: 208 RLEQLRTFEREYRTRLKTYLESQLEELGQRGS 239



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>AG84_MYCBO (P0A5N3) Antigen 84|
          Length = 260

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 27/92 (29%)
 Frame = -1

Query: 666 ESKIAEARQKKDTLKARAQS-----------------AKTATKVSEMLGNVNTSSA---- 550
           ++ +AEARQ+ D + A AQS                 A    K SE++G +N   A    
Sbjct: 148 DATVAEARQRADAMLADAQSRSEAQLRQAQEKADALQADAERKHSEIMGTINQQRAVLEG 207

Query: 549 -LSAFEKMEEKVMT-----MESQAEALGQLGA 472
            L      E +  T     +ESQ E LGQ G+
Sbjct: 208 RLEQLRTFEREYRTRLKTYLESQLEELGQRGS 239



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>STCK_EMENI (Q00706) Putative sterigmatocystin biosynthesis fatty acid synthase|
            beta subunit
          Length = 1914

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -2

Query: 359  GRTATPRDRDIERELNEL--REKANDY*ILQGMPVYRAGRDLLSQRTPEKRIACRFVQCA 186
            G T T   R  ER +  +  R + +   + +G PV R     + QR PE+ ++ +  +C 
Sbjct: 1239 GDTVTTSSRITERTITTIGQRVEISAELLREGKPVVRLQTTFIIQRRPEESVSQQQFRCV 1298

Query: 185  FEPSM 171
             EP M
Sbjct: 1299 EEPDM 1303



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>EKC1_SCHPO (O74511) Extragenic suppressor of kinetochore protein 1|
          Length = 838

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 425 DDDLAQMRKELSGSSLKGELPQGRTATPRDRDIERELNELREKAND 288
           DDD+ ++ +ELS +S   +   G    P  R++ R L+   E AND
Sbjct: 697 DDDVVEVHRELSHNSSSNDEDDGNDEDPLSREMSRRLS--FESAND 740



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>SMG5_HUMAN (Q9UPR3) Protein SMG5 (SMG-5 homolog) (EST1-like protein B)|
            (LPTS-interacting protein) (LPTS-RP1)
          Length = 1016

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
 Frame = -2

Query: 440  RLHRVDDDLAQMRKELSGSSLKGELPQGRTAT-------PRDRDIERELNELREKANDY* 282
            R +R+  D+AQ+R +L  S L+G L Q +  +       P  + +   L  +R+ A    
Sbjct: 820  RRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQALCHHLPVIRQLATSGR 879

Query: 281  ILQGMP-VYRAGRDLLSQRTPEKRIACRFVQCAFEPSMHVFFC 156
             +  +P     G DLL +  P  R   R+++  F+       C
Sbjct: 880  FIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRC 922



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>TRUB_PSEF5 (Q4KIF4) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 305

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
 Frame = -2

Query: 422 DDLAQMRKELSGSSLKGELPQGRTATPRDRDIERELNELREKAND----Y*ILQ--GMPV 261
           + LAQ+ K  + +  +GE+ Q R  T    DIE  L E R +       Y  L+  G P+
Sbjct: 77  ETLAQLGKTTTTADAEGEVLQTREVTVGRADIEAVLPEFRGEIKQIPPMYSALKRDGQPL 136

Query: 260 YRAGR-DLLSQRTPEKRIACRFVQCAFE 180
           Y+  R   + +R P      R    AFE
Sbjct: 137 YKLARAGEVVEREPRSVTIARLELLAFE 164



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>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse|
           transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
           (RT); Integrase (IN)]
          Length = 1196

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
 Frame = -2

Query: 461 KESLLCLRLHRVDDDLAQMRKELSGSSLKGE-----LPQGRTATPR--DRDIERELNELR 303
           K++  CLRLH     L        G  + G+     LPQG   +P   D  + R+L + R
Sbjct: 272 KDAFFCLRLHPTSQPLFAFEWRDPGMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFR 331

Query: 302 EKANDY*ILQ 273
            +  D  +LQ
Sbjct: 332 IQHPDLILLQ 341



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>TAF12_YEAST (Q03761) Transcription initiation factor TFIID subunit 12|
           (TBP-associated factor 12) (TBP-associated factor 61
           kDa) (TAFII-61) (TAFII61) (TAFII-68) (TAFII68)
          Length = 539

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 633 DTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEALGQLGA 472
           D LK++ Q   T T  +   GNVNTS      E+ + KV  + + A  L  + +
Sbjct: 300 DALKSQQQQQNTITATNNPRGNVNTSQT----EQSKAKVTNVNATASMLNNISS 349


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,087,633
Number of Sequences: 219361
Number of extensions: 1915532
Number of successful extensions: 4608
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4606
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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