ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24b09 |
|---|---|
| Clone Library Name | barley_pub |
>IM30_ORYSA (Q8S0J7) Probable membrane-associated 30 kDa protein, chloroplast| precursor Length = 317 Score = 136 bits (343), Expect(2) = 1e-46 Identities = 71/79 (89%), Positives = 75/79 (94%) Frame = -1 Query: 666 ESKIAEARQKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEAL 487 ESKIAEA+QKKDTLKARAQSAKT+TKVSEMLGNVNTS ALSAFEKMEEKVM MESQAEAL Sbjct: 183 ESKIAEAKQKKDTLKARAQSAKTSTKVSEMLGNVNTSGALSAFEKMEEKVMAMESQAEAL 242 Query: 486 GQLGADDLEGKFAMLETTS 430 GQL DDLEGKFA+LET+S Sbjct: 243 GQLATDDLEGKFALLETSS 261 Score = 70.1 bits (170), Expect(2) = 1e-46 Identities = 38/61 (62%), Positives = 43/61 (70%), Gaps = 8/61 (13%) Frame = -2 Query: 443 LRLHRVDDDLAQMRKELSGSSLKGELPQGRTATP--------RDRDIERELNELREKAND 288 L VDDDLAQM+KE+SGSS KGELP GRTA RD +IE ELNELR+KAN+ Sbjct: 257 LETSSVDDDLAQMKKEISGSSSKGELPPGRTAVSNSGAARPFRDIEIENELNELRKKANE 316 Query: 287 Y 285 Y Sbjct: 317 Y 317
>IM30_PEA (Q03943) Membrane-associated 30 kDa protein, chloroplast precursor| (M30) Length = 323 Score = 139 bits (349), Expect(2) = 8e-43 Identities = 74/79 (93%), Positives = 75/79 (94%) Frame = -1 Query: 666 ESKIAEARQKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEAL 487 ESKI EAR KKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEAL Sbjct: 186 ESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEAL 245 Query: 486 GQLGADDLEGKFAMLETTS 430 GQL DDLEGKFAMLET+S Sbjct: 246 GQLTTDDLEGKFAMLETSS 264 Score = 55.1 bits (131), Expect(2) = 8e-43 Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 11/63 (17%) Frame = -2 Query: 443 LRLHRVDDDLAQMRKELSGSSLKGELPQGRTATP-----------RDRDIERELNELREK 297 L VDDDLA ++KEL+GSS KGELP GR++T RD DIE EL +LR++ Sbjct: 260 LETSSVDDDLANLKKELAGSSKKGELPPGRSSTTSTTSTKTGNPFRDADIEIELEQLRKR 319 Query: 296 AND 288 + + Sbjct: 320 SKE 322
>IM30_ARATH (O80796) Probable membrane-associated 30 kDa protein, chloroplast| precursor Length = 330 Score = 117 bits (293), Expect(2) = 4e-39 Identities = 60/79 (75%), Positives = 69/79 (87%) Frame = -1 Query: 666 ESKIAEARQKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEAL 487 ESKI EA+ KKDTL ARA++AKTATKV EM+G VNTS ALSAFEKMEEKVM MES+A+AL Sbjct: 197 ESKIQEAKAKKDTLLARARTAKTATKVQEMIGTVNTSGALSAFEKMEEKVMAMESEADAL 256 Query: 486 GQLGADDLEGKFAMLETTS 430 Q+G D+LEGKF MLET+S Sbjct: 257 TQIGTDELEGKFQMLETSS 275 Score = 64.3 bits (155), Expect(2) = 4e-39 Identities = 34/60 (56%), Positives = 40/60 (66%), Gaps = 7/60 (11%) Frame = -2 Query: 443 LRLHRVDDDLAQMRKELSGSSLKGELPQGRTATP-------RDRDIERELNELREKANDY 285 L VDDDLA ++KELSGSS KGELP GR+ +D +IE ELNELR KAND+ Sbjct: 271 LETSSVDDDLADLKKELSGSSKKGELPPGRSTVAASTRYPFKDSEIENELNELRRKANDF 330
>Y617_SYNY3 (Q55707) Hypothetical protein sll0617| Length = 267 Score = 80.1 bits (196), Expect = 5e-15 Identities = 39/80 (48%), Positives = 59/80 (73%) Frame = -1 Query: 666 ESKIAEARQKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEAL 487 E+KI+EA+ KK+ L+ARA++AK ++ + LG + TSSA SAFE+ME KV+ ME+ ++A Sbjct: 126 EAKISEAKTKKNMLQARAKAAKANAELQQTLGGLGTSSATSAFERMENKVLDMEATSQAA 185 Query: 486 GQLGADDLEGKFAMLETTSG 427 G+L +E +FA LE +SG Sbjct: 186 GELAGFGIENQFAQLEASSG 205
>PSPA_DEIRA (Q9RUB7) Phage shock protein A homolog| Length = 223 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/66 (36%), Positives = 37/66 (56%) Frame = -1 Query: 666 ESKIAEARQKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEAL 487 E+KI E KK L AR ++A+ + + G A+ AF +ME+KV ME + +A+ Sbjct: 126 EAKIDEMESKKTLLAARQKTAQAGETLDRVSGFSKAGGAMDAFNEMEQKVAGMEDRNKAM 185 Query: 486 GQLGAD 469 G+L D Sbjct: 186 GELRND 191
>PSPA_BACSU (P54617) Phage shock protein A homolog| Length = 226 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 4/80 (5%) Frame = -1 Query: 663 SKIAEARQKKDTLKARAQSAKTATKVSEMLGNVN-TSSALSAFEKMEEKVMTMESQAEAL 487 S I E +K+ +KA+ AKT +++++ +V+ TS ++SAF +ME+KV QA A+ Sbjct: 126 SDIGELEARKNMIKAKWAVAKTQERMNKLGASVSSTSQSMSAFGRMEDKVNKALDQANAM 185 Query: 486 GQLGA---DDLEGKFAMLET 436 +L + DD+ A +T Sbjct: 186 AELNSAPQDDMADLSAKYDT 205
>AG84_MYCTU (P0A5N2) Antigen 84| Length = 260 Score = 32.3 bits (72), Expect = 1.3 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 27/92 (29%) Frame = -1 Query: 666 ESKIAEARQKKDTLKARAQS-----------------AKTATKVSEMLGNVNTSSA---- 550 ++ +AEARQ+ D + A AQS A K SE++G +N A Sbjct: 148 DATVAEARQRADAMLADAQSRSEAQLRQAQEKADALQADAERKHSEIMGTINQQRAVLEG 207 Query: 549 -LSAFEKMEEKVMT-----MESQAEALGQLGA 472 L E + T +ESQ E LGQ G+ Sbjct: 208 RLEQLRTFEREYRTRLKTYLESQLEELGQRGS 239
>AG84_MYCBO (P0A5N3) Antigen 84| Length = 260 Score = 32.3 bits (72), Expect = 1.3 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 27/92 (29%) Frame = -1 Query: 666 ESKIAEARQKKDTLKARAQS-----------------AKTATKVSEMLGNVNTSSA---- 550 ++ +AEARQ+ D + A AQS A K SE++G +N A Sbjct: 148 DATVAEARQRADAMLADAQSRSEAQLRQAQEKADALQADAERKHSEIMGTINQQRAVLEG 207 Query: 549 -LSAFEKMEEKVMT-----MESQAEALGQLGA 472 L E + T +ESQ E LGQ G+ Sbjct: 208 RLEQLRTFEREYRTRLKTYLESQLEELGQRGS 239
>STCK_EMENI (Q00706) Putative sterigmatocystin biosynthesis fatty acid synthase| beta subunit Length = 1914 Score = 30.8 bits (68), Expect = 3.8 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = -2 Query: 359 GRTATPRDRDIERELNEL--REKANDY*ILQGMPVYRAGRDLLSQRTPEKRIACRFVQCA 186 G T T R ER + + R + + + +G PV R + QR PE+ ++ + +C Sbjct: 1239 GDTVTTSSRITERTITTIGQRVEISAELLREGKPVVRLQTTFIIQRRPEESVSQQQFRCV 1298 Query: 185 FEPSM 171 EP M Sbjct: 1299 EEPDM 1303
>EKC1_SCHPO (O74511) Extragenic suppressor of kinetochore protein 1| Length = 838 Score = 30.4 bits (67), Expect = 5.0 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = -2 Query: 425 DDDLAQMRKELSGSSLKGELPQGRTATPRDRDIERELNELREKAND 288 DDD+ ++ +ELS +S + G P R++ R L+ E AND Sbjct: 697 DDDVVEVHRELSHNSSSNDEDDGNDEDPLSREMSRRLS--FESAND 740
>SMG5_HUMAN (Q9UPR3) Protein SMG5 (SMG-5 homolog) (EST1-like protein B)| (LPTS-interacting protein) (LPTS-RP1) Length = 1016 Score = 30.4 bits (67), Expect = 5.0 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 8/103 (7%) Frame = -2 Query: 440 RLHRVDDDLAQMRKELSGSSLKGELPQGRTAT-------PRDRDIERELNELREKANDY* 282 R +R+ D+AQ+R +L S L+G L Q + + P + + L +R+ A Sbjct: 820 RRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQALCHHLPVIRQLATSGR 879 Query: 281 ILQGMP-VYRAGRDLLSQRTPEKRIACRFVQCAFEPSMHVFFC 156 + +P G DLL + P R R+++ F+ C Sbjct: 880 FIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRC 922
>TRUB_PSEF5 (Q4KIF4) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 305 Score = 29.6 bits (65), Expect = 8.5 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 7/88 (7%) Frame = -2 Query: 422 DDLAQMRKELSGSSLKGELPQGRTATPRDRDIERELNELREKAND----Y*ILQ--GMPV 261 + LAQ+ K + + +GE+ Q R T DIE L E R + Y L+ G P+ Sbjct: 77 ETLAQLGKTTTTADAEGEVLQTREVTVGRADIEAVLPEFRGEIKQIPPMYSALKRDGQPL 136 Query: 260 YRAGR-DLLSQRTPEKRIACRFVQCAFE 180 Y+ R + +R P R AFE Sbjct: 137 YKLARAGEVVEREPRSVTIARLELLAFE 164
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1196 Score = 29.6 bits (65), Expect = 8.5 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%) Frame = -2 Query: 461 KESLLCLRLHRVDDDLAQMRKELSGSSLKGE-----LPQGRTATPR--DRDIERELNELR 303 K++ CLRLH L G + G+ LPQG +P D + R+L + R Sbjct: 272 KDAFFCLRLHPTSQPLFAFEWRDPGMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFR 331 Query: 302 EKANDY*ILQ 273 + D +LQ Sbjct: 332 IQHPDLILLQ 341
>TAF12_YEAST (Q03761) Transcription initiation factor TFIID subunit 12| (TBP-associated factor 12) (TBP-associated factor 61 kDa) (TAFII-61) (TAFII61) (TAFII-68) (TAFII68) Length = 539 Score = 29.6 bits (65), Expect = 8.5 Identities = 17/54 (31%), Positives = 26/54 (48%) Frame = -1 Query: 633 DTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMTMESQAEALGQLGA 472 D LK++ Q T T + GNVNTS E+ + KV + + A L + + Sbjct: 300 DALKSQQQQQNTITATNNPRGNVNTSQT----EQSKAKVTNVNATASMLNNISS 349 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,087,633 Number of Sequences: 219361 Number of extensions: 1915532 Number of successful extensions: 4608 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4469 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4606 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
