ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24b09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105003.1| Zea mays PCO095419 mRNA sequence 325 1e-85
2ref|NM_190255.1| Oryza sativa (japonica cultivar-group), predic... 301 2e-78
3dbj|AK099166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 301 2e-78
4dbj|AK067698.1| Oryza sativa (japonica cultivar-group) cDNA clon... 301 2e-78
5dbj|AK058611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 301 2e-78
6gb|M73744.1|PEAIM30 Pisum sativum IM30 protein mRNA, complete cds 117 5e-23
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
8dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
9dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
10gb|AC137825.26| Medicago truncatula clone mth2-23j1, complete se... 52 0.002
11dbj|AB082959.1| Rhodobacter blasticus plasmid pMG160 DNA, comple... 46 0.15
12dbj|AB082961.1| Cloning vector pMG171 DNA, complete genome 46 0.15
13dbj|AB082960.1| Cloning vector pMG170 DNA, complete genome 46 0.15
14gb|AC108064.3| Homo sapiens BAC clone RP11-485C11 from 4, comple... 44 0.58
15gb|AC140251.2| Mus musculus BAC clone RP24-289C19 from chromosom... 42 2.3
16gb|AF036704.1| Caenorhabditis elegans cosmid ZK185, complete seq... 42 2.3
17ref|XM_806172.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 2.3
18ref|XM_815497.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 2.3
19emb|CR931738.1| Medicago truncatula chromosome 5 clone mth2-56k1... 42 2.3
20gb|AC114954.2| Homo sapiens chromosome 5 clone RP11-103A10, comp... 42 2.3
21tpg|BK003533.1| TPA: TPA_inf: Drosophila melanogaster HDC03027 (... 42 2.3
22gb|AC093048.1| Drosophila melanogaster, chromosome 2L, region 36... 42 2.3
23gb|AE003657.3| Drosophila melanogaster chromosome 2L, section 66... 42 2.3
24gb|AC005444.1|AC005444 Drosophila melanogaster, chromosome 2R, r... 42 2.3
25gb|AC007858.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.1
26ref|XM_802836.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.1
27ref|XM_811900.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.1
28gb|AC098731.3| Mus musculus BAC clone RP23-3L10 from 9, complete... 40 9.1
29gb|AC069280.10| Homo sapiens BAC clone RP11-3P22 from 7, complet... 40 9.1
30gb|AC073090.8| Homo sapiens BAC clone RP11-328J2 from 7, complet... 40 9.1
31ref|XM_672097.1| Plasmodium berghei strain ANKA hypothetical pro... 40 9.1
32gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete se... 40 9.1
33emb|AL445604.9| Human DNA sequence from clone RP11-661D17 on chr... 40 9.1
34emb|AL356005.9| Human DNA sequence from clone RP11-54B9 on chrom... 40 9.1
35emb|AL354858.16| Human DNA sequence from clone RP11-367P24 on ch... 40 9.1
36emb|AL136318.13| Human DNA sequence from clone RP1-254P11 on chr... 40 9.1
37gb|AF279873.4| Homo sapiens chromosome 8 clone RP1-25D10, RP1-27... 40 9.1
38gb|AC091525.17| Homo sapiens 12 BAC RP11-490N22 (Roswell Park Ca... 40 9.1
39dbj|AK148674.1| Mus musculus 2 days neonate sympathetic ganglion... 40 9.1
40dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
41gb|AC025157.18| Homo sapiens 12 BAC RP11-401I10 (Roswell Park Ca... 40 9.1
42gb|AC007238.3| Homo sapiens BAC clone RP11-19M18 from 2, complet... 40 9.1
43dbj|AP005490.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
44dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
45emb|AL357172.3|CNS05TDW Human chromosome 14 DNA sequence BAC R-7... 40 9.1
46dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 9.1
47gb|AY796188.1| Xenopus laevis CR3 short transcript variant (CR3)... 40 9.1
48dbj|AP001341.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 9.1
49emb|AL359682.4|CNS05TF0 Human chromosome 14 DNA sequence BAC C-2... 40 9.1 
>gb|AY105003.1| Zea mays PCO095419 mRNA sequence
          Length = 1460

 Score =  325 bits (164), Expect = 1e-85
 Identities = 280/316 (88%), Gaps = 2/316 (0%)
 Strand = Plus / Minus

                                                                        
Query: 352  gttctaccttgaggaagttcacctttcaaagagctaccagacaactcttttctcatttgt 411
            ||||| ||| ||||||| || |||||||||||||| |||||||| || ||| ||| ||||
Sbjct: 1060 gttctgcctggaggaagctctcctttcaaagagcttccagacaattcctttttcagttgt 1001

                                                                        
Query: 412  gcaagatcatcatcaacccgatgtagtctcaagcatagcaaactttccttctagatcatc 471
            | |||||||||||||||  |||| |||||||||||  |||||||||||||||| ||||||
Sbjct: 1000 gaaagatcatcatcaaca-gatgaagtctcaagcagtgcaaactttccttctaaatcatc 942

                                                                        
Query: 472  tgctcctaactgacca-agtgcctcagcttgggattccatcgtcataactttttcctcca 530
             | | ||||||| ||  |||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 941  agttgctaactggcccgagtgcctctgcttgggattccatcgccataactttttcctcca 882

                                                                        
Query: 531  ttttttcaaatgccgacagggcactacttgtattcacattccccaacatttcactcactt 590
            |||| |||||||| || ||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 881  ttttctcaaatgcagaaagggcgctacttgtattcacgttgcccaacatttcactcactt 822

                                                                        
Query: 591  ttgttgcagttttggctgattgagcacgggcttttagggtatcttttttctgcctggcct 650
            |||| ||||| || |||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct: 821  ttgtagcagtctttgctgattgagcacgagcttttagggtatcctttttctgcttggcct 762

                            
Query: 651  ctgctatcttgctctc 666
            ||||||||||||||||
Sbjct: 761  ctgctatcttgctctc 746
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>ref|NM_190255.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 954

 Score =  301 bits (152), Expect = 2e-78
 Identities = 273/312 (87%), Gaps = 1/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 352 gttctaccttgaggaagttcacctttcaaagagctaccagacaactcttttctcatttgt 411
           ||||||||| |||||||||| |||||| ||||||| ||||| |  || ||| ||||||||
Sbjct: 860 gttctacctggaggaagttctcctttcgaagagcttccagaaatttcctttttcatttgt 801

                                                                       
Query: 412 gcaagatcatcatcaacccgatgtagtctcaagcatagcaaactttccttctagatcatc 471
           ||||| |||||||||||| |||| |||||||||||  |||||||||||||| ||||||||
Sbjct: 800 gcaaggtcatcatcaacc-gatgaagtctcaagcaatgcaaactttccttcaagatcatc 742

                                                                       
Query: 472 tgctcctaactgaccaagtgcctcagcttgggattccatcgtcataactttttcctccat 531
            | | | |||||||| |||||||| |||||||| ||||| | ||||||||||||||||||
Sbjct: 741 agttgccaactgaccgagtgcctctgcttgggactccattgccataactttttcctccat 682

                                                                       
Query: 532 tttttcaaatgccgacagggcactacttgtattcacattccccaacatttcactcacttt 591
           ||| |||||||| || || |||| ||| ||||| |||||||||| |||||| ||||||||
Sbjct: 681 tttctcaaatgctgaaagagcaccactagtatttacattccccagcatttcgctcacttt 622

                                                                       
Query: 592 tgttgcagttttggctgattgagcacgggcttttagggtatcttttttctgcctggcctc 651
           ||||| ||| ||||||||||||||||||||||||| |||||||||||| ||| | |||||
Sbjct: 621 tgttgaagtcttggctgattgagcacgggcttttaaggtatcttttttttgcttagcctc 562

                       
Query: 652 tgctatcttgct 663
           ||||||||||||
Sbjct: 561 tgctatcttgct 550



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 282 ctaataatcgttggccttctcccgcagctcattta 316
           |||||| || |||||||||| ||||||||||||||
Sbjct: 954 ctaatattcattggccttcttccgcagctcattta 920
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>dbj|AK099166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081J06, full
           insert sequence
          Length = 1306

 Score =  301 bits (152), Expect = 2e-78
 Identities = 273/312 (87%), Gaps = 1/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 352 gttctaccttgaggaagttcacctttcaaagagctaccagacaactcttttctcatttgt 411
           ||||||||| |||||||||| |||||| ||||||| ||||| |  || ||| ||||||||
Sbjct: 921 gttctacctggaggaagttctcctttcgaagagcttccagaaatttcctttttcatttgt 862

                                                                       
Query: 412 gcaagatcatcatcaacccgatgtagtctcaagcatagcaaactttccttctagatcatc 471
           ||||| |||||||||||| |||| |||||||||||  |||||||||||||| ||||||||
Sbjct: 861 gcaaggtcatcatcaacc-gatgaagtctcaagcaatgcaaactttccttcaagatcatc 803

                                                                       
Query: 472 tgctcctaactgaccaagtgcctcagcttgggattccatcgtcataactttttcctccat 531
            | | | |||||||| |||||||| |||||||| ||||| | ||||||||||||||||||
Sbjct: 802 agttgccaactgaccgagtgcctctgcttgggactccattgccataactttttcctccat 743

                                                                       
Query: 532 tttttcaaatgccgacagggcactacttgtattcacattccccaacatttcactcacttt 591
           ||| |||||||| || || |||| ||| ||||| |||||||||| |||||| ||||||||
Sbjct: 742 tttctcaaatgctgaaagagcaccactagtatttacattccccagcatttcgctcacttt 683

                                                                       
Query: 592 tgttgcagttttggctgattgagcacgggcttttagggtatcttttttctgcctggcctc 651
           ||||| ||| ||||||||||||||||||||||||| |||||||||||| ||| | |||||
Sbjct: 682 tgttgaagtcttggctgattgagcacgggcttttaaggtatcttttttttgcttagcctc 623

                       
Query: 652 tgctatcttgct 663
           ||||||||||||
Sbjct: 622 tgctatcttgct 611



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 279  aatctaataatcgttggccttctcccgcagctcattta 316
            ||||||||| || |||||||||  ||||||||||||||
Sbjct: 1018 aatctaatattcattggccttcctccgcagctcattta 981
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>dbj|AK067698.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116L10, full
           insert sequence
          Length = 1309

 Score =  301 bits (152), Expect = 2e-78
 Identities = 273/312 (87%), Gaps = 1/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 352 gttctaccttgaggaagttcacctttcaaagagctaccagacaactcttttctcatttgt 411
           ||||||||| |||||||||| |||||| ||||||| ||||| |  || ||| ||||||||
Sbjct: 924 gttctacctggaggaagttctcctttcgaagagcttccagaaatttcctttttcatttgt 865

                                                                       
Query: 412 gcaagatcatcatcaacccgatgtagtctcaagcatagcaaactttccttctagatcatc 471
           ||||| |||||||||||| |||| |||||||||||  |||||||||||||| ||||||||
Sbjct: 864 gcaaggtcatcatcaacc-gatgaagtctcaagcaatgcaaactttccttcaagatcatc 806

                                                                       
Query: 472 tgctcctaactgaccaagtgcctcagcttgggattccatcgtcataactttttcctccat 531
            | | | |||||||| |||||||| |||||||| ||||| | ||||||||||||||||||
Sbjct: 805 agttgccaactgaccgagtgcctctgcttgggactccattgccataactttttcctccat 746

                                                                       
Query: 532 tttttcaaatgccgacagggcactacttgtattcacattccccaacatttcactcacttt 591
           ||| |||||||| || || |||| ||| ||||| |||||||||| |||||| ||||||||
Sbjct: 745 tttctcaaatgctgaaagagcaccactagtatttacattccccagcatttcgctcacttt 686

                                                                       
Query: 592 tgttgcagttttggctgattgagcacgggcttttagggtatcttttttctgcctggcctc 651
           ||||| ||| ||||||||||||||||||||||||| |||||||||||| ||| | |||||
Sbjct: 685 tgttgaagtcttggctgattgagcacgggcttttaaggtatcttttttttgcttagcctc 626

                       
Query: 652 tgctatcttgct 663
           ||||||||||||
Sbjct: 625 tgctatcttgct 614



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 279  aatctaataatcgttggccttctcccgcagctcattta 316
            ||||||||| || |||||||||| ||||||||||||||
Sbjct: 1021 aatctaatattcattggccttcttccgcagctcattta 984
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>dbj|AK058611.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-A10, full
           insert sequence
          Length = 1357

 Score =  301 bits (152), Expect = 2e-78
 Identities = 273/312 (87%), Gaps = 1/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 352 gttctaccttgaggaagttcacctttcaaagagctaccagacaactcttttctcatttgt 411
           ||||||||| |||||||||| |||||| ||||||| ||||| |  || ||| ||||||||
Sbjct: 992 gttctacctggaggaagttctcctttcgaagagcttccagaaatttcctttttcatttgt 933

                                                                       
Query: 412 gcaagatcatcatcaacccgatgtagtctcaagcatagcaaactttccttctagatcatc 471
           ||||| |||||||||||| |||| |||||||||||  |||||||||||||| ||||||||
Sbjct: 932 gcaaggtcatcatcaacc-gatgaagtctcaagcaatgcaaactttccttcaagatcatc 874

                                                                       
Query: 472 tgctcctaactgaccaagtgcctcagcttgggattccatcgtcataactttttcctccat 531
            | | | |||||||| |||||||| |||||||| ||||| | ||||||||||||||||||
Sbjct: 873 agttgccaactgaccgagtgcctctgcttgggactccattgccataactttttcctccat 814

                                                                       
Query: 532 tttttcaaatgccgacagggcactacttgtattcacattccccaacatttcactcacttt 591
           ||| |||||||| || || |||| ||| ||||| |||||||||| |||||| ||||||||
Sbjct: 813 tttctcaaatgctgaaagagcaccactagtatttacattccccagcatttcgctcacttt 754

                                                                       
Query: 592 tgttgcagttttggctgattgagcacgggcttttagggtatcttttttctgcctggcctc 651
           ||||| ||| ||||||||||||||||||||||||| |||||||||||| ||| | |||||
Sbjct: 753 tgttgaagtcttggctgattgagcacgggcttttaaggtatcttttttttgcttagcctc 694

                       
Query: 652 tgctatcttgct 663
           ||||||||||||
Sbjct: 693 tgctatcttgct 682



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 279  aatctaataatcgttggccttctcccgcagctcattta 316
            ||||||||| || |||||||||| ||||||||||||||
Sbjct: 1089 aatctaatattcattggccttcttccgcagctcattta 1052
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>gb|M73744.1|PEAIM30 Pisum sativum IM30 protein mRNA, complete cds
          Length = 1449

 Score =  117 bits (59), Expect = 5e-23
 Identities = 183/223 (82%), Gaps = 1/223 (0%)
 Strand = Plus / Minus

                                                                       
Query: 411 tgcaagatcatcatcaacccgatgtagtctcaagcatagcaaactttccttctagatcat 470
           |||||| |||||||||||  ||||  ||||||||||| |||||||| ||||| ||||| |
Sbjct: 879 tgcaaggtcatcatcaact-gatgaggtctcaagcattgcaaacttcccttcaagatcgt 821

                                                                       
Query: 471 ctgctcctaactgaccaagtgcctcagcttgggattccatcgtcataactttttcctcca 530
           | | |   ||||| || || || ||||||||||| ||||| ||||| ||||| || ||||
Sbjct: 820 cagttgtcaactggcccagagcttcagcttgggactccattgtcatcactttctcttcca 761

                                                                       
Query: 531 ttttttcaaatgccgacagggcactacttgtattcacattccccaacatttcactcactt 590
           |||||||||| || || || |||||||||||||| ||||| |||| ||| |||||||| |
Sbjct: 760 ttttttcaaaagctgaaagagcactacttgtattgacatttcccagcatctcactcacct 701

                                                      
Query: 591 ttgttgcagttttggctgattgagcacgggcttttagggtatc 633
           | |||||||| || || |||||||| |  |||||||| |||||
Sbjct: 700 tggttgcagtctttgcagattgagctcttgcttttagagtatc 658
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 58/62 (93%)
 Strand = Plus / Plus

                                                                            
Query: 602      ttggctgattgagcacgggcttttagggtatcttttttctgcctggcctctgctatcttg 661
                ||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||||||
Sbjct: 38906135 ttggctgattgagcacgggcttttaaggtatcttttttttgcttagcctctgctatcttg 38906194

                  
Query: 662      ct 663
                ||
Sbjct: 38906195 ct 38906196



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                            
Query: 519      ctttttcctccattttttcaaatgccgacagggcactacttgtattcacattccccaaca 578
                |||||||||||||||| |||||||| || || |||| ||| ||||| |||||||||| ||
Sbjct: 38905955 ctttttcctccattttctcaaatgctgaaagagcaccactagtatttacattccccagca 38906014

                                  
Query: 579      tttcactcacttttgttg 596
                |||| |||||||||||||
Sbjct: 38906015 tttcgctcacttttgttg 38906032



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 47/52 (90%), Gaps = 1/52 (1%)
 Strand = Plus / Plus

                                                                    
Query: 404      tcatttgtgcaagatcatcatcaacccgatgtagtctcaagcatagcaaact 455
                ||||||||||||| |||||||||| |||||| |||||||||||  |||||||
Sbjct: 38904966 tcatttgtgcaaggtcatcatcaa-ccgatgaagtctcaagcaatgcaaact 38905016



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 279      aatctaataatcgttggccttctcccgcagctcattta 316
                ||||||||| || |||||||||| ||||||||||||||
Sbjct: 38904540 aatctaatattcattggccttcttccgcagctcattta 38904577
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>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1078G07
          Length = 199457

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 58/62 (93%)
 Strand = Plus / Plus

                                                                          
Query: 602    ttggctgattgagcacgggcttttagggtatcttttttctgcctggcctctgctatcttg 661
              ||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||||||
Sbjct: 179017 ttggctgattgagcacgggcttttaaggtatcttttttttgcttagcctctgctatcttg 179076

                
Query: 662    ct 663
              ||
Sbjct: 179077 ct 179078



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                          
Query: 519    ctttttcctccattttttcaaatgccgacagggcactacttgtattcacattccccaaca 578
              |||||||||||||||| |||||||| || || |||| ||| ||||| |||||||||| ||
Sbjct: 178837 ctttttcctccattttctcaaatgctgaaagagcaccactagtatttacattccccagca 178896

                                
Query: 579    tttcactcacttttgttg 596
              |||| |||||||||||||
Sbjct: 178897 tttcgctcacttttgttg 178914



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 47/52 (90%), Gaps = 1/52 (1%)
 Strand = Plus / Plus

                                                                  
Query: 404    tcatttgtgcaagatcatcatcaacccgatgtagtctcaagcatagcaaact 455
              ||||||||||||| |||||||||| |||||| |||||||||||  |||||||
Sbjct: 177848 tcatttgtgcaaggtcatcatcaa-ccgatgaagtctcaagcaatgcaaact 177898



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                    
Query: 279    aatctaataatcgttggccttctcccgcagctcattta 316
              ||||||||| || |||||||||| ||||||||||||||
Sbjct: 177422 aatctaatattcattggccttcttccgcagctcattta 177459
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>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0696G06
          Length = 142571

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 58/62 (93%)
 Strand = Plus / Plus

                                                                         
Query: 602   ttggctgattgagcacgggcttttagggtatcttttttctgcctggcctctgctatcttg 661
             ||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||||||
Sbjct: 70921 ttggctgattgagcacgggcttttaaggtatcttttttttgcttagcctctgctatcttg 70980

               
Query: 662   ct 663
             ||
Sbjct: 70981 ct 70982



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                         
Query: 519   ctttttcctccattttttcaaatgccgacagggcactacttgtattcacattccccaaca 578
             |||||||||||||||| |||||||| || || |||| ||| ||||| |||||||||| ||
Sbjct: 70741 ctttttcctccattttctcaaatgctgaaagagcaccactagtatttacattccccagca 70800

                               
Query: 579   tttcactcacttttgttg 596
             |||| |||||||||||||
Sbjct: 70801 tttcgctcacttttgttg 70818



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 47/52 (90%), Gaps = 1/52 (1%)
 Strand = Plus / Plus

                                                                 
Query: 404   tcatttgtgcaagatcatcatcaacccgatgtagtctcaagcatagcaaact 455
             ||||||||||||| |||||||||| |||||| |||||||||||  |||||||
Sbjct: 69752 tcatttgtgcaaggtcatcatcaa-ccgatgaagtctcaagcaatgcaaact 69802



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 279   aatctaataatcgttggccttctcccgcagctcattta 316
             ||||||||| || |||||||||| ||||||||||||||
Sbjct: 69326 aatctaatattcattggccttcttccgcagctcattta 69363
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>gb|AC137825.26| Medicago truncatula clone mth2-23j1, complete sequence
          Length = 130938

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                         
Query: 527   tccattttttcaaatgccgacagggcactacttgtattcacattccccaacatttcactc 586
             |||||||||||||| || || ||||| | ||||||||| ||||| |||| ||| ||||||
Sbjct: 88769 tccattttttcaaaagcggaaagggcgccacttgtattgacatttcccagcatctcactc 88828

               
Query: 587   ac 588
             ||
Sbjct: 88829 ac 88830
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>dbj|AB082959.1| Rhodobacter blasticus plasmid pMG160 DNA, complete sequence
          Length = 3431

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 289  tcgttggccttctcccgcagctc 311
            |||||||||||||||||||||||
Sbjct: 1236 tcgttggccttctcccgcagctc 1214
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>dbj|AB082961.1| Cloning vector pMG171 DNA, complete genome
          Length = 6068

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 289  tcgttggccttctcccgcagctc 311
            |||||||||||||||||||||||
Sbjct: 2228 tcgttggccttctcccgcagctc 2250
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>dbj|AB082960.1| Cloning vector pMG170 DNA, complete genome
          Length = 6068

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 289  tcgttggccttctcccgcagctc 311
            |||||||||||||||||||||||
Sbjct: 2228 tcgttggccttctcccgcagctc 2250
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>gb|AC108064.3| Homo sapiens BAC clone RP11-485C11 from 4, complete sequence
          Length = 104623

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 631   atcttttttctgcctggcctct 652
             ||||||||||||||||||||||
Sbjct: 64266 atcttttttctgcctggcctct 64287
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>gb|AC140251.2| Mus musculus BAC clone RP24-289C19 from chromosome 12, complete
             sequence
          Length = 177652

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 95    atgtcattcacaggaaaaatg 115
             |||||||||||||||||||||
Sbjct: 81851 atgtcattcacaggaaaaatg 81871
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>gb|AF036704.1| Caenorhabditis elegans cosmid ZK185, complete sequence
          Length = 29363

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 578  atttcactcacttttgttgca 598
            |||||||||||||||||||||
Sbjct: 2443 atttcactcacttttgttgca 2463
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>ref|XM_806172.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053511131.60) partial mRNA
          Length = 1593

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 302  cccgcagctcatttaactccc 322
            |||||||||||||||||||||
Sbjct: 1096 cccgcagctcatttaactccc 1076
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>ref|XM_815497.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506855.330) partial mRNA
          Length = 1473

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 302 cccgcagctcatttaactccc 322
           |||||||||||||||||||||
Sbjct: 976 cccgcagctcatttaactccc 956
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>emb|CR931738.1| Medicago truncatula chromosome 5 clone mth2-56k10, COMPLETE SEQUENCE
          Length = 132450

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 559   tgtattcacattccccaacatttca 583
             |||||||||||| ||||||||||||
Sbjct: 37987 tgtattcacattacccaacatttca 38011
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>gb|AC114954.2| Homo sapiens chromosome 5 clone RP11-103A10, complete sequence
          Length = 157980

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 518   actttttcctccattttttca 538
             |||||||||||||||||||||
Sbjct: 98311 actttttcctccattttttca 98291
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>tpg|BK003533.1| TPA: TPA_inf: Drosophila melanogaster HDC03027 (HDC03027) gene,
           complete cds
          Length = 885

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 571 ccccaacatttcactcacttt 591
           |||||||||||||||||||||
Sbjct: 303 ccccaacatttcactcacttt 283
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>gb|AC093048.1| Drosophila melanogaster, chromosome 2L, region 36D-36E, BAC clone
             BACR39D12, complete sequence
          Length = 184021

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 571   ccccaacatttcactcacttt 591
             |||||||||||||||||||||
Sbjct: 44949 ccccaacatttcactcacttt 44929
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>gb|AE003657.3| Drosophila melanogaster chromosome 2L, section 66 of 83 of the complete
              sequence
          Length = 265254

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 571    ccccaacatttcactcacttt 591
              |||||||||||||||||||||
Sbjct: 218061 ccccaacatttcactcacttt 218041
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>gb|AC005444.1|AC005444 Drosophila melanogaster, chromosome 2R, region 36D3-36D3, P1 clone
             DS06379, complete sequence
          Length = 77685

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 571   ccccaacatttcactcacttt 591
             |||||||||||||||||||||
Sbjct: 45357 ccccaacatttcactcacttt 45337
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>gb|AC007858.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I,
             complete sequence
          Length = 99587

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 519   ctttttcctccattttttcaaatg 542
             ||||||||||| ||||||||||||
Sbjct: 79686 ctttttcctcctttttttcaaatg 79709
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>ref|XM_802836.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053509393.40) partial mRNA
          Length = 3825

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 519 ctttttcctccattttttcaaatg 542
           ||||||||| ||||||||||||||
Sbjct: 328 ctttttccttcattttttcaaatg 305
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>ref|XM_811900.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053507491.110) partial mRNA
          Length = 3825

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 519 ctttttcctccattttttcaaatg 542
           ||||||||| ||||||||||||||
Sbjct: 328 ctttttccttcattttttcaaatg 305
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>gb|AC098731.3| Mus musculus BAC clone RP23-3L10 from 9, complete sequence
          Length = 220184

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   tggccttctcccgcagctca 312
             ||||||||||||||||||||
Sbjct: 77223 tggccttctcccgcagctca 77242
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>gb|AC069280.10| Homo sapiens BAC clone RP11-3P22 from 7, complete sequence
          Length = 167563

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 568   attccccaacatttcactca 587
             ||||||||||||||||||||
Sbjct: 53995 attccccaacatttcactca 54014
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>gb|AC073090.8| Homo sapiens BAC clone RP11-328J2 from 7, complete sequence
          Length = 116557

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aggaaaaatgcagagaatct 125
            ||||||||||||||||||||
Sbjct: 6591 aggaaaaatgcagagaatct 6572
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>ref|XM_672097.1| Plasmodium berghei strain ANKA hypothetical protein (PB000528.02.0)
           partial mRNA
          Length = 741

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 523 ttcctccattttttcaaatg 542
           ||||||||||||||||||||
Sbjct: 429 ttcctccattttttcaaatg 410
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>gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete sequence
          Length = 139330

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 342   aggagtagcggttctaccttgagg 365
             |||| |||||||||||||||||||
Sbjct: 35118 aggaatagcggttctaccttgagg 35095
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>emb|AL445604.9| Human DNA sequence from clone RP11-661D17 on chromosome 13 Contains a CpG
              island, complete sequence
          Length = 174615

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    aggaaaaatgcagagaatct 125
              ||||||||||||||||||||
Sbjct: 119702 aggaaaaatgcagagaatct 119683
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>emb|AL356005.9| Human DNA sequence from clone RP11-54B9 on chromosome 1 Contains a
             pseudogene similar to flavin-containing monooxygenase
             proteins, a ribosomal protein L4 (RPL4) pseudogene and the
             5' end of a pseudogene similar to flavin-containing
             monooxygenase proteins, complete sequence
          Length = 118425

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   agaaaacatgcattgaaggt 180
             ||||||||||||||||||||
Sbjct: 76580 agaaaacatgcattgaaggt 76561
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>emb|AL354858.16| Human DNA sequence from clone RP11-367P24 on chromosome 6 Contains
            STSs and GSSs, complete sequence
          Length = 155358

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 576  acatttcactcacttttgttgcagtttt 603
            ||||||| ||||||||||||||| ||||
Sbjct: 1808 acatttccctcacttttgttgcattttt 1835
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>emb|AL136318.13| Human DNA sequence from clone RP1-254P11 on chromosome 10 Contains a
            transcription elongation factor B (SIII) polypeptide 1
            (15kDa, elongin C) (TCEB1) pseudogene, complete sequence
          Length = 55284

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aggaaaaatgcagagaatct 125
            ||||||||||||||||||||
Sbjct: 8758 aggaaaaatgcagagaatct 8739
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>gb|AF279873.4| Homo sapiens chromosome 8 clone RP1-25D10, RP1-273G13, RP1-103E7 map
             8p21-p11, complete sequence
          Length = 301232

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   aggaaaaatgcagagaatct 125
             ||||||||||||||||||||
Sbjct: 33093 aggaaaaatgcagagaatct 33074
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>gb|AC091525.17| Homo sapiens 12 BAC RP11-490N22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 129740

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    agaaaacatgcattgaaggt 180
              ||||||||||||||||||||
Sbjct: 113703 agaaaacatgcattgaaggt 113684
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>dbj|AK148674.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
           full-length enriched library, clone:7120433E19
           product:unclassifiable, full insert sequence
          Length = 2691

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 293 tggccttctcccgcagctca 312
           ||||||||||||||||||||
Sbjct: 221 tggccttctcccgcagctca 240
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 519      ctttttcctccattttttcaaatg 542
                ||||||||||| ||||||||||||
Sbjct: 14424813 ctttttcctcctttttttcaaatg 14424836
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>gb|AC025157.18| Homo sapiens 12 BAC RP11-401I10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 143417

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    agaaaacatgcattgaaggt 180
              ||||||||||||||||||||
Sbjct: 127388 agaaaacatgcattgaaggt 127369
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>gb|AC007238.3| Homo sapiens BAC clone RP11-19M18 from 2, complete sequence
          Length = 169147

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 521    ttttcctccattttttcaaatgcc 544
              |||||||||||||||| |||||||
Sbjct: 106959 ttttcctccatttttttaaatgcc 106982
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>dbj|AP005490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0049I01
          Length = 140261

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 519   ctttttcctccattttttcaaatg 542
             ||||||||||| ||||||||||||
Sbjct: 19681 ctttttcctcctttttttcaaatg 19704
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>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0670E08
          Length = 133106

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 519   ctttttcctccattttttcaaatg 542
             ||||||||||| ||||||||||||
Sbjct: 69096 ctttttcctcctttttttcaaatg 69119
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>emb|AL357172.3|CNS05TDW Human chromosome 14 DNA sequence BAC R-789A21 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 198714

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 109    aaaaatgcagagaatcttcctcac 132
              ||||||||||||||||| ||||||
Sbjct: 180480 aaaaatgcagagaatctgcctcac 180503
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>dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, section 37/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aggaaaaatgcagagaatct 125
            ||||||||||||||||||||
Sbjct: 8681 aggaaaaatgcagagaatct 8662
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>gb|AY796188.1| Xenopus laevis CR3 short transcript variant (CR3) mRNA, complete cds,
            alternatively spliced
          Length = 1973

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 571  ccccaacatttcactcactt 590
            ||||||||||||||||||||
Sbjct: 1346 ccccaacatttcactcactt 1327
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>dbj|AP001341.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B266G18,
             LL56-APP region, complete sequence
          Length = 122318

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   aggaaaaatgcagagaatct 125
             ||||||||||||||||||||
Sbjct: 67424 aggaaaaatgcagagaatct 67405
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>emb|AL359682.4|CNS05TF0 Human chromosome 14 DNA sequence BAC C-2561F5 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 116067

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   aggaaaaatgcagagaatct 125
             ||||||||||||||||||||
Sbjct: 24269 aggaaaaatgcagagaatct 24288


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,628,888
Number of Sequences: 3902068
Number of extensions: 6628888
Number of successful extensions: 131473
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131292
Number of HSP's gapped (non-prelim): 170
length of query: 666
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 643
effective length of database: 17,143,297,704
effective search space: 11023140423672
effective search space used: 11023140423672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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