ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23m08 |
|---|---|
| Clone Library Name | barley_pub |
>DERL2_PONPY (Q5RC74) Derlin-2 (Degradation in endoplasmic reticulum protein 2)| (Der1-like protein 2) Length = 239 Score = 120 bits (300), Expect = 3e-27 Identities = 53/96 (55%), Positives = 72/96 (75%), Gaps = 1/96 (1%) Frame = -3 Query: 492 FARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDL 313 F ++FL + T M+VYVWS+ NP++ M+F GL F A +LPWVL+GFS+L+G+S VDL Sbjct: 114 FVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDL 173 Query: 312 LGMIAGHVYYFLEDVYPRMTGR-RPLKTPSFIKALF 208 LG+ GH+Y+FLEDV+P G R LKTPS +KA+F Sbjct: 174 LGIAVGHIYFFLEDVFPNQPGGIRILKTPSILKAIF 209
>DERL2_HUMAN (Q9GZP9) Derlin-2 (Degradation in endoplasmic reticulum protein 2)| (Der1-like protein 2) (DERtrin-2) (F-LANa) (F-LAN-1) Length = 239 Score = 120 bits (300), Expect = 3e-27 Identities = 53/96 (55%), Positives = 72/96 (75%), Gaps = 1/96 (1%) Frame = -3 Query: 492 FARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDL 313 F ++FL + T M+VYVWS+ NP++ M+F GL F A +LPWVL+GFS+L+G+S VDL Sbjct: 114 FVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDL 173 Query: 312 LGMIAGHVYYFLEDVYPRMTGR-RPLKTPSFIKALF 208 LG+ GH+Y+FLEDV+P G R LKTPS +KA+F Sbjct: 174 LGIAVGHIYFFLEDVFPNQPGGIRILKTPSILKAIF 209
>DERL2_MOUSE (Q8BNI4) Derlin-2 (Degradation in endoplasmic reticulum protein 2)| (Der1-like protein 2) (F-LANa) Length = 239 Score = 117 bits (292), Expect = 2e-26 Identities = 50/96 (52%), Positives = 71/96 (73%), Gaps = 1/96 (1%) Frame = -3 Query: 492 FARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDL 313 F ++FL + T M+VYVWS+ NP++ M+F GL F A +LPWVL+GFS+L+G+S VDL Sbjct: 114 FVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDL 173 Query: 312 LGMIAGHVYYFLEDVYPRMTGR-RPLKTPSFIKALF 208 LG+ GH+Y+FLED++P G R LKTPS ++ +F Sbjct: 174 LGIAVGHIYFFLEDIFPNQPGGIRILKTPSILRTIF 209
>DERL2_CAEEL (Q21997) Derlin-2 (DER1-like protein 2) (cDerlin-2)| Length = 237 Score = 115 bits (287), Expect = 9e-26 Identities = 52/96 (54%), Positives = 72/96 (75%), Gaps = 1/96 (1%) Frame = -3 Query: 492 FARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDL 313 F +ILFL + T M+VY+WS+ NP I M+F G+ TFTA YLPWVLL FS+L+G++ VD Sbjct: 112 FVQILFLGQAFTIMLVYIWSRRNPMIQMNFFGVLTFTAPYLPWVLLLFSLLLGNNAVVDF 171 Query: 312 LGMIAGHVYYFLEDVYP-RMTGRRPLKTPSFIKALF 208 +G+ GH+Y+FLEDV+P + G+R LKTP ++ LF Sbjct: 172 MGIACGHIYFFLEDVFPFQEHGKRFLKTPQWLVYLF 207
>DERL3_HUMAN (Q96Q80) Derlin-3 (Degradation in endoplasmic reticulum protein 3)| (Der1-like protein 3) (DERtrin-3) Length = 235 Score = 110 bits (274), Expect = 3e-24 Identities = 49/92 (53%), Positives = 68/92 (73%), Gaps = 1/92 (1%) Frame = -3 Query: 483 ILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGM 304 + FL +L M+VYVWS+ +P + ++F GL TF A +LPW L+GFS+L+G+S VDLLG+ Sbjct: 117 LFFLGQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGI 176 Query: 303 IAGHVYYFLEDVYPRMT-GRRPLKTPSFIKAL 211 GH+YYFLEDV+P G+R L+TP F+K L Sbjct: 177 AVGHIYYFLEDVFPNQPGGKRLLQTPGFLKLL 208
>DERL3_MOUSE (Q9D8K3) Derlin-3 (Degradation in endoplasmic reticulum protein 3)| (Der1-like protein 3) (Protein IZP6) Length = 228 Score = 107 bits (268), Expect = 1e-23 Identities = 48/95 (50%), Positives = 67/95 (70%), Gaps = 1/95 (1%) Frame = -3 Query: 483 ILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGM 304 + FL +L M+VYVWS+ +P + ++F GL F A +LPW L+GFS+L+G+S DLLG+ Sbjct: 117 LFFLGQALMAMLVYVWSRRSPHVRVNFFGLLNFQAPFLPWALMGFSLLLGNSVVTDLLGI 176 Query: 303 IAGHVYYFLEDVYPRMT-GRRPLKTPSFIKALFAD 202 + GH+YYFLEDV+P G+R L TPS +K L D Sbjct: 177 LVGHIYYFLEDVFPNQPGGKRLLLTPSVLKLLLDD 211
>DERL1_MOUSE (Q99J56) Derlin-1 (Degradation in endoplasmic reticulum protein 1)| (Der1-like protein 1) Length = 251 Score = 68.6 bits (166), Expect = 1e-11 Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%) Frame = -3 Query: 462 LTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYY 283 L ++YVW++ N + +SF F A YLPWV+LGF+ ++G S +L+G + GH+Y+ Sbjct: 125 LIMSVLYVWAQLNRDLIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYF 184 Query: 282 FLEDVYPR-MTGRRPLKTPSFI 220 FL YP + GR L TP F+ Sbjct: 185 FLMFRYPMDLGGRNFLSTPQFL 206
>DERL1_PONPY (Q5R9W3) Derlin-1 (Degradation in endoplasmic reticulum protein 1)| (Der1-like protein 1) Length = 251 Score = 68.2 bits (165), Expect = 1e-11 Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%) Frame = -3 Query: 462 LTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYY 283 L ++YVW++ N + +SF F A YLPWV+LGF+ ++G S +L+G + GH+Y+ Sbjct: 125 LIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYF 184 Query: 282 FLEDVYPR-MTGRRPLKTPSFI 220 FL YP + GR L TP F+ Sbjct: 185 FLMFRYPMDLGGRNFLSTPQFL 206
>DERL1_HUMAN (Q9BUN8) Derlin-1 (Degradation in endoplasmic reticulum protein 1)| (Der1-like protein 1) (DERtrin-1) Length = 251 Score = 68.2 bits (165), Expect = 1e-11 Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%) Frame = -3 Query: 462 LTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYY 283 L ++YVW++ N + +SF F A YLPWV+LGF+ ++G S +L+G + GH+Y+ Sbjct: 125 LIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYF 184 Query: 282 FLEDVYPR-MTGRRPLKTPSFI 220 FL YP + GR L TP F+ Sbjct: 185 FLMFRYPMDLGGRNFLSTPQFL 206
>DERL1_BOVIN (Q71SS4) Derlin-1 (Degradation in endoplasmic reticulum protein 1)| (Der1-like protein 1) Length = 251 Score = 68.2 bits (165), Expect = 1e-11 Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%) Frame = -3 Query: 462 LTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYY 283 L ++YVW++ N + +SF F A YLPWV+LGF+ ++G S +L+G + GH+Y+ Sbjct: 125 LIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYF 184 Query: 282 FLEDVYPR-MTGRRPLKTPSFI 220 FL YP + GR L TP F+ Sbjct: 185 FLMFRYPMDLGGRNFLSTPQFL 206
>DERL1_DROME (Q9VQ57) Derlin-1 (DER1-like protein 1)| Length = 245 Score = 65.9 bits (159), Expect = 6e-11 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Frame = -3 Query: 483 ILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGM 304 + FL ++L + Y+W + N + +SF F A YLPWVL F + S L+G+ Sbjct: 117 VYFLMDTLVLAITYIWCQLNKDVTVSFWFGTRFKAMYLPWVLAAFEFIFHFSL-ASLVGI 175 Query: 303 IAGHVYYFLEDVYPRMTGRRP-LKTPSFIKALFAD 202 GHVYYF + Y + G P L+TP F+K L D Sbjct: 176 FVGHVYYFFKFQYSQDLGGTPLLETPQFLKRLVPD 210
>DERL1_CAEEL (Q93561) Derlin-1 (DER1-like protein 1) (cDerlin-1)| Length = 245 Score = 65.1 bits (157), Expect = 1e-10 Identities = 33/96 (34%), Positives = 51/96 (53%) Frame = -3 Query: 483 ILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGM 304 I FL + ++YVW + N +SF F A YLPWVL GF+ ++ +L+G+ Sbjct: 117 IYFLLEPMVISVLYVWCQVNKDTIVSFWFGMRFPARYLPWVLWGFNAVLRGGGTNELVGI 176 Query: 303 IAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDN 196 + GH Y+F+ YP G + TP F+ L D++ Sbjct: 177 LVGHAYFFVALKYPDEYGVDLISTPEFLHRLIPDED 212
>DFM1_YEAST (Q12743) DER1-like family member protein 1| Length = 341 Score = 33.5 bits (75), Expect = 0.35 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Frame = -3 Query: 474 LSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWV-DLLGMIA 298 L++ + Y WS N + + F GL Y P + L S + +V L+G Sbjct: 150 LTSGFISCITYTWSIDNANVQIMFYGLIPVWGKYFPLIQLFISFVFNEGDFVISLIGFTT 209 Query: 297 GHVYYFLE 274 G++Y L+ Sbjct: 210 GYLYTCLD 217
>DER1_YEAST (P38307) Degradation in the endoplasmic reticulum protein 1| Length = 211 Score = 32.7 bits (73), Expect = 0.60 Identities = 15/76 (19%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = -3 Query: 453 MMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDL-LGMIAGHVYYFL 277 ++ Y K+ +++ F G+ + + P + V +W+++ + + GHV Y++ Sbjct: 126 LVYYELKKNGNQMNVRFFGVIDVSPSIFPIYMNAVMYFVYKRSWLEIAMNFMPGHVIYYM 185 Query: 276 EDVYPRMTGRRPLKTP 229 +D+ ++ G K+P Sbjct: 186 DDIIGKIYGIDLCKSP 201
>PALH_YEAST (P48565) pH-response regulator protein palH/RIM21 (Regulator of| IME2 protein 21) Length = 533 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/73 (21%), Positives = 32/73 (43%) Frame = -3 Query: 486 RILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLG 307 RI ++ + ++ ++W K + + +GL T + +L GF + S+ W+ LG Sbjct: 253 RIAIATSYASIVIYHIWQKKKLWFKFNQMGLLTLLTILVVLLLPGFFLADVSNLWISELG 312 Query: 306 MIAGHVYYFLEDV 268 + Y V Sbjct: 313 EVFNTTCYVTSTV 325
>Y077_MYCPN (P75040) Hypothetical protein MG061 homolog 2 (R02_orf469)| Length = 546 Score = 30.4 bits (67), Expect = 3.0 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Frame = -3 Query: 507 YIXETFARILFLSNSLTFMMVYVWSKH---NPFIHMSFLGLFTFTAAYLPWVLLGFSILV 337 Y + + +F +N++ +++ +++ N + +F+G+FTF A W LG SIL+ Sbjct: 369 YDKKRWLHFIFTANAVLVLLIVIFAATLGLNTVVGFTFVGIFTFIAGGFGW-SLGSSILI 427
>T2R60_GORGO (Q645Z0) Taste receptor type 2 member 60 (T2R60) (T2R56)| Length = 318 Score = 30.4 bits (67), Expect = 3.0 Identities = 19/59 (32%), Positives = 28/59 (47%) Frame = -3 Query: 459 TFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYY 283 T++ V+ K F H FL L + +LPW+L VG S++ +L I H Y Sbjct: 112 TWLSVFYCVKIAAFTHPVFLWLKHKLSGWLPWILFS---SVGLSSFTTILFFIGNHRMY 167
>YHGE_ECOLI (P45804) Hypothetical protein yhgE| Length = 574 Score = 30.0 bits (66), Expect = 3.9 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = -3 Query: 483 ILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLG 352 ++FL+N LT++++ +WS+ + ++F F + ++ LG Sbjct: 147 VIFLANGLTWLVLLLWSELFKLVGITFFNTLFFATDWFIYLTLG 190
>TOP2_MIMIV (Q5UQE6) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1263 Score = 29.6 bits (65), Expect = 5.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 69 TKLYPTNCMSVITGTGGLLLNPHPQTLQP 155 TK+YP N +I LL N +P+T++P Sbjct: 885 TKIYPCNPRDIIANIKRLLTNENPKTMKP 913
>FEUC_BACSU (P40411) Iron-uptake system permease protein feuC| Length = 394 Score = 29.6 bits (65), Expect = 5.1 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Frame = -3 Query: 480 LFLSNSLT---FMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLL 310 LFLS + + M VW + + +T+ A LPW+LL IL+G S +D + Sbjct: 166 LFLSLKMDPQDYQMAMVWKNGS-----IWSANWTYITAVLPWMLLFIPILIGKSRLLDTI 220
>T2R60_PANPA (Q646D0) Taste receptor type 2 member 60 (T2R60) (T2R56)| Length = 318 Score = 29.3 bits (64), Expect = 6.7 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = -3 Query: 459 TFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYY 283 T++ V+ K F H F L + +LPW++ + VG S++ +L I H Y Sbjct: 112 TWLSVFYCVKIATFTHPVFFWLKHKLSGWLPWMIFSY---VGLSSFTTILFFIGNHRMY 167
>POLG_JAEVJ (P32886) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3432 Score = 29.3 bits (64), Expect = 6.7 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +1 Query: 115 GVCC*TPTPKPCSRADTGVG 174 GV TP+PKPCS+ DT G Sbjct: 1506 GVFWDTPSPKPCSKGDTTTG 1525
>POLG_JAEV5 (P19110) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3432 Score = 29.3 bits (64), Expect = 6.7 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +1 Query: 115 GVCC*TPTPKPCSRADTGVG 174 GV TP+PKPCS+ DT G Sbjct: 1506 GVFWDTPSPKPCSKGDTTTG 1525
>POLG_JAEV1 (P27395) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3432 Score = 29.3 bits (64), Expect = 6.7 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +1 Query: 115 GVCC*TPTPKPCSRADTGVG 174 GV TP+PKPCS+ DT G Sbjct: 1506 GVFWDTPSPKPCSKGDTTTG 1525
>T2R60_PANTR (Q646A5) Taste receptor type 2 member 60 (T2R60) (T2R56)| Length = 318 Score = 28.9 bits (63), Expect = 8.7 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = -3 Query: 459 TFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYY 283 T++ V+ K F H F L + +LPW++ + VG S++ +L I H Y Sbjct: 112 TWLSVFYCVKIATFTHPVFFWLKHKLSGWLPWMVFSY---VGLSSFTTILFFIGNHRMY 167
>T2R60_HUMAN (P59551) Taste receptor type 2 member 60 (T2R60) (T2R56)| Length = 318 Score = 28.9 bits (63), Expect = 8.7 Identities = 19/61 (31%), Positives = 28/61 (45%) Frame = -3 Query: 465 SLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVY 286 S T++ V+ K F H F L + +LPW+L VG S++ +L I H Sbjct: 110 SSTWLSVFYCVKIATFTHPVFFWLKHKLSGWLPWMLFS---SVGLSSFTTILFFIGNHRM 166 Query: 285 Y 283 Y Sbjct: 167 Y 167
>ATG26_LEPMC (Q8NJS1) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)| (Autophagy-related protein 26) (UDP-glycosyltransferase 51) Length = 1456 Score = 28.9 bits (63), Expect = 8.7 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +1 Query: 280 EVIHMTSNHTQKINPCTAPHQNREAQKD 363 EV H+T N ++P TAPH R + D Sbjct: 488 EVPHITENVRATLSPLTAPHVGRSSMSD 515
>Y3846_ARATH (Q8LB17) Protein At3g58460| Length = 403 Score = 28.9 bits (63), Expect = 8.7 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = -3 Query: 468 NSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLL-GFSILVGSSTWVDLLGMIAG 295 + + F M+ + + + S GLF A PW+LL F +L+ T V LLG + G Sbjct: 145 SGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLM---TNVSLLGHLCG 200
>CUBN_MOUSE (Q9JLB4) Cubilin precursor (Intrinsic factor-cobalamin receptor)| Length = 3623 Score = 28.9 bits (63), Expect = 8.7 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Frame = +3 Query: 51 HHGHGCT-KLYPTNCMSVITGTGGLLLNP-HPQTLQPRRHRRWVAAPPRPR 197 HHG+ PT C + G G+L NP P + H W P R Sbjct: 3497 HHGYEIIWASSPTGCGGTLLGNEGILANPGFPDSYPNNTHCEWTIVAPSGR 3547 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,517,654 Number of Sequences: 219361 Number of extensions: 1771349 Number of successful extensions: 4701 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 4571 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4694 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
