ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465528.1| Oryza sativa (japonica cultivar-group), mRNA 258 2e-65
2dbj|AK070377.1| Oryza sativa (japonica cultivar-group) cDNA clon... 258 2e-65
3gb|AY110121.1| Zea mays CL7385_1 mRNA sequence 149 1e-32
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
5dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
6dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
7ref|XM_471716.1| Oryza sativa (japonica cultivar-group), predic... 117 4e-23
8emb|BX324175.6| Zebrafish DNA sequence from clone DKEY-237M7 in ... 44 0.49
9gb|AC163225.4| Mus musculus chromosome 8, clone RP23-319L22, com... 42 1.9
10emb|AL604027.9| Mouse DNA sequence from clone RP23-155G20 on chr... 42 1.9
11gb|AC090987.5| Homo sapiens chromosome 8, clone RP11-269I24, com... 42 1.9
12ref|XM_224299.3| PREDICTED: Rattus norvegicus similar to RIKEN c... 42 1.9
13gb|AC068607.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 7.6
14gb|AC146008.3| Pan troglodytes BAC clone RP43-13N15 from 7, comp... 40 7.6
15emb|CR974574.10| Pig DNA sequence from clone CH242-93P8 on chrom... 40 7.6
16gb|AC126028.4| Mus musculus BAC clone RP24-542M6 from chromosome... 40 7.6
17gb|AC004852.2| Homo sapiens PAC clone RP4-668E10 from 7, complet... 40 7.6
18emb|CR956634.3| Pig DNA sequence from clone CH242-277I8 on chrom... 40 7.6
19emb|X69184.1|APTUBA2A A.pyhllitidis mRNA for alpha-tubulin 2 40 7.6
20emb|BX942837.5| Zebrafish DNA sequence from clone CH211-224B23 i... 40 7.6
21emb|CR387990.9| Opossum DNA sequence from clone XX-068C1, comple... 40 7.6
22emb|CR387999.7| Opossum DNA sequence from clone XX-158F12, compl... 40 7.6
23gb|AC153606.3| Mus musculus 6 BAC RP23-252F12 (Roswell Park Canc... 40 7.6
24gb|AC146009.3| Pan troglodytes BAC clone RP43-13O12 from chromos... 40 7.6
25gb|AC153994.8| Mus musculus 6 BAC RP24-178H18 (Roswell Park Canc... 40 7.6
26emb|BX000437.7| Zebrafish DNA sequence from clone DKEY-106O5 in ... 40 7.6
27gb|AY449460.1| Oikopleura dioica clone BACOIKO004 7xk22, complet... 40 7.6
28gb|AC144632.4| Mus musculus BAC clone RP23-106G16 from chromosom... 40 7.6 
>ref|XM_465528.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1268

 Score =  258 bits (130), Expect = 2e-65
 Identities = 264/309 (85%)
 Strand = Plus / Minus

                                                                       
Query: 250 ttagatttctgcggtttgaagatgttggccttgtagtatttcagctcggcgatgctttct 309
           |||||||| || |||||||| |||||| ||| |||||||||||| || ||||||||||||
Sbjct: 954 ttagatttttgaggtttgaaaatgttgtcctcgtagtatttcagttcagcgatgctttct 895

                                                                       
Query: 310 ttgatatcgtccatcgccctgtgacttttccctttcctaggagtttgcttnctttcttta 369
           |||||||| | ||| ||||| ||  ||||||||||   ||||||| |||| |||||||| 
Sbjct: 894 ttgatatcattcattgccctatgttttttccctttttgaggagttcgcttcctttctttg 835

                                                                       
Query: 370 gggtaccaccgggtgcacaaagccatgatactgctcacatcaacaatcacgtgagagaag 429
           |||||||| | | ||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 834 gggtaccatctgatgcacaaagccattatactgctcacatcaacaataacgtgagagaag 775

                                                                       
Query: 430 atggctgcaagctgtggcatatacttctttagaaatagtaaatctacgtaaactgaattc 489
           |||||||||||||| |||||||| ||||| | |||||||||||| || ||||| ||||||
Sbjct: 774 atggctgcaagctgcggcatataattcttcaaaaatagtaaatccacataaacagaattc 715

                                                                       
Query: 490 ccagctattgatggagtgcctgaacctacatgcttcatgaggaagtctaacacctgtttc 549
           ||||||||| ||||||    |||||| ||||||||| | |  || |||||||| ||| ||
Sbjct: 714 ccagctattaatggaggagatgaaccaacatgcttcttaacaaaatctaacacttgtgtc 655

                    
Query: 550 tccgcgtca 558
           || ||||||
Sbjct: 654 tctgcgtca 646
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>dbj|AK070377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054H24, full
           insert sequence
          Length = 1268

 Score =  258 bits (130), Expect = 2e-65
 Identities = 264/309 (85%)
 Strand = Plus / Minus

                                                                       
Query: 250 ttagatttctgcggtttgaagatgttggccttgtagtatttcagctcggcgatgctttct 309
           |||||||| || |||||||| |||||| ||| |||||||||||| || ||||||||||||
Sbjct: 954 ttagatttttgaggtttgaaaatgttgtcctcgtagtatttcagttcagcgatgctttct 895

                                                                       
Query: 310 ttgatatcgtccatcgccctgtgacttttccctttcctaggagtttgcttnctttcttta 369
           |||||||| | ||| ||||| ||  ||||||||||   ||||||| |||| |||||||| 
Sbjct: 894 ttgatatcattcattgccctatgttttttccctttttgaggagttcgcttcctttctttg 835

                                                                       
Query: 370 gggtaccaccgggtgcacaaagccatgatactgctcacatcaacaatcacgtgagagaag 429
           |||||||| | | ||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 834 gggtaccatctgatgcacaaagccattatactgctcacatcaacaataacgtgagagaag 775

                                                                       
Query: 430 atggctgcaagctgtggcatatacttctttagaaatagtaaatctacgtaaactgaattc 489
           |||||||||||||| |||||||| ||||| | |||||||||||| || ||||| ||||||
Sbjct: 774 atggctgcaagctgcggcatataattcttcaaaaatagtaaatccacataaacagaattc 715

                                                                       
Query: 490 ccagctattgatggagtgcctgaacctacatgcttcatgaggaagtctaacacctgtttc 549
           ||||||||| ||||||    |||||| ||||||||| | |  || |||||||| ||| ||
Sbjct: 714 ccagctattaatggaggagatgaaccaacatgcttcttaacaaaatctaacacttgtgtc 655

                    
Query: 550 tccgcgtca 558
           || ||||||
Sbjct: 654 tctgcgtca 646
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>gb|AY110121.1| Zea mays CL7385_1 mRNA sequence
          Length = 975

 Score =  149 bits (75), Expect = 1e-32
 Identities = 117/131 (89%)
 Strand = Plus / Plus

                                                                       
Query: 383 tgcacaaagccatgatactgctcacatcaacaatcacgtgagagaagatggctgcaagct 442
           |||| |||||||| |||||||||||||| ||||| || |||||||||| |||||||||||
Sbjct: 474 tgcataaagccattatactgctcacatcgacaattacatgagagaagacggctgcaagct 533

                                                                       
Query: 443 gtggcatatacttctttagaaatagtaaatctacgtaaactgaattcccagctattgatg 502
           ||||||| |||||||| |||||||| ||||| || ||||| ||||||||||||| | |||
Sbjct: 534 gtggcatgtacttcttcagaaatagaaaatccacataaacagaattcccagctaataatg 593

                      
Query: 503 gagtgcctgaa 513
           |||||||||||
Sbjct: 594 gagtgcctgaa 604



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 68/78 (87%)
 Strand = Plus / Plus

                                                                       
Query: 253 gatttctgcggtttgaagatgttggccttgtagtatttcagctcggcgatgctttctttg 312
           |||||||| |||||||| ||||||  |||||| || ||||| ||||||||||||||||| 
Sbjct: 344 gatttctgtggtttgaaaatgttgtgcttgtaatacttcagttcggcgatgctttcttta 403

                             
Query: 313 atatcgtccatcgccctg 330
           ||||| ||||| ||||||
Sbjct: 404 atatcatccattgccctg 421
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  121 bits (61), Expect = 3e-24
 Identities = 85/93 (91%)
 Strand = Plus / Plus

                                                                            
Query: 365      ctttagggtaccaccgggtgcacaaagccatgatactgctcacatcaacaatcacgtgag 424
                |||| |||||||| | | ||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 15751554 ctttggggtaccatctgatgcacaaagccattatactgctcacatcaacaataacgtgag 15751613

                                                 
Query: 425      agaagatggctgcaagctgtggcatatacttct 457
                ||||||||||||||||||| |||||||| ||||
Sbjct: 15751614 agaagatggctgcaagctgcggcatataattct 15751646



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 99/117 (84%)
 Strand = Plus / Plus

                                                                            
Query: 250      ttagatttctgcggtttgaagatgttggccttgtagtatttcagctcggcgatgctttct 309
                |||||||| || |||||||| |||||| ||| |||||||||||| || ||||||||||||
Sbjct: 15750336 ttagatttttgaggtttgaaaatgttgtcctcgtagtatttcagttcagcgatgctttct 15750395

                                                                         
Query: 310      ttgatatcgtccatcgccctgtgacttttccctttcctaggagtttgcttnctttct 366
                |||||||| | ||| ||||| ||  ||||||||||   ||||||| |||| ||||||
Sbjct: 15750396 ttgatatcattcattgccctatgttttttccctttttgaggagttcgcttcctttct 15750452



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                            
Query: 462      aaatagtaaatctacgtaaactgaattcccagctattgatggag 505
                |||||||||||| || ||||| ||||||||||||||| ||||||
Sbjct: 15751973 aaatagtaaatccacataaacagaattcccagctattaatggag 15752016
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>dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1342_D02
          Length = 125460

 Score =  121 bits (61), Expect = 3e-24
 Identities = 85/93 (91%)
 Strand = Plus / Plus

                                                                        
Query: 365  ctttagggtaccaccgggtgcacaaagccatgatactgctcacatcaacaatcacgtgag 424
            |||| |||||||| | | ||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 9494 ctttggggtaccatctgatgcacaaagccattatactgctcacatcaacaataacgtgag 9553

                                             
Query: 425  agaagatggctgcaagctgtggcatatacttct 457
            ||||||||||||||||||| |||||||| ||||
Sbjct: 9554 agaagatggctgcaagctgcggcatataattct 9586



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 99/117 (84%)
 Strand = Plus / Plus

                                                                        
Query: 250  ttagatttctgcggtttgaagatgttggccttgtagtatttcagctcggcgatgctttct 309
            |||||||| || |||||||| |||||| ||| |||||||||||| || ||||||||||||
Sbjct: 8276 ttagatttttgaggtttgaaaatgttgtcctcgtagtatttcagttcagcgatgctttct 8335

                                                                     
Query: 310  ttgatatcgtccatcgccctgtgacttttccctttcctaggagtttgcttnctttct 366
            |||||||| | ||| ||||| ||  ||||||||||   ||||||| |||| ||||||
Sbjct: 8336 ttgatatcattcattgccctatgttttttccctttttgaggagttcgcttcctttct 8392



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                        
Query: 462  aaatagtaaatctacgtaaactgaattcccagctattgatggag 505
            |||||||||||| || ||||| ||||||||||||||| ||||||
Sbjct: 9913 aaatagtaaatccacataaacagaattcccagctattaatggag 9956
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>dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0035A24
          Length = 176446

 Score =  121 bits (61), Expect = 3e-24
 Identities = 85/93 (91%)
 Strand = Plus / Plus

                                                                          
Query: 365    ctttagggtaccaccgggtgcacaaagccatgatactgctcacatcaacaatcacgtgag 424
              |||| |||||||| | | ||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 160241 ctttggggtaccatctgatgcacaaagccattatactgctcacatcaacaataacgtgag 160300

                                               
Query: 425    agaagatggctgcaagctgtggcatatacttct 457
              ||||||||||||||||||| |||||||| ||||
Sbjct: 160301 agaagatggctgcaagctgcggcatataattct 160333



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 99/117 (84%)
 Strand = Plus / Plus

                                                                          
Query: 250    ttagatttctgcggtttgaagatgttggccttgtagtatttcagctcggcgatgctttct 309
              |||||||| || |||||||| |||||| ||| |||||||||||| || ||||||||||||
Sbjct: 159023 ttagatttttgaggtttgaaaatgttgtcctcgtagtatttcagttcagcgatgctttct 159082

                                                                       
Query: 310    ttgatatcgtccatcgccctgtgacttttccctttcctaggagtttgcttnctttct 366
              |||||||| | ||| ||||| ||  ||||||||||   ||||||| |||| ||||||
Sbjct: 159083 ttgatatcattcattgccctatgttttttccctttttgaggagttcgcttcctttct 159139



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                          
Query: 462    aaatagtaaatctacgtaaactgaattcccagctattgatggag 505
              |||||||||||| || ||||| ||||||||||||||| ||||||
Sbjct: 160660 aaatagtaaatccacataaacagaattcccagctattaatggag 160703
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>ref|XM_471716.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 750

 Score =  117 bits (59), Expect = 4e-23
 Identities = 190/234 (81%)
 Strand = Plus / Minus

                                                                       
Query: 264 tttgaagatgttggccttgtagtatttcagctcggcgatgctttctttgatatcgtccat 323
           |||||| |||||  ||||||||||||  |||||    ||||||||| | || || |||||
Sbjct: 732 tttgaatatgttttccttgtagtattgtagctccttaatgctttctctaatgtcatccat 673

                                                                       
Query: 324 cgccctgtgacttttccctttcctaggagtttgcttnctttctttagggtaccaccgggt 383
           |||||||||  | ||| | ||||| ||||  || || |||||||| ||| |||| |||| 
Sbjct: 672 cgccctgtggttcttctccttccttggagcatgtttcctttctttggggaaccatcggga 613

                                                                       
Query: 384 gcacaaagccatgatactgctcacatcaacaatcacgtgagagaagatggctgcaagctg 443
           ||||||||||   |||||||| |||||||| ||||| |||||||| |||||||| || ||
Sbjct: 612 gcacaaagccgatatactgcttacatcaactatcacatgagagaaaatggctgccagatg 553

                                                                 
Query: 444 tggcatatacttctttagaaatagtaaatctacgtaaactgaattcccagctat 497
           |||||| |||||||| | |||||||||||| |  || || ||||||||||||||
Sbjct: 552 tggcatgtacttcttcaaaaatagtaaatccatatagacagaattcccagctat 499
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>emb|BX324175.6| Zebrafish DNA sequence from clone DKEY-237M7 in linkage group 22,
             complete sequence
          Length = 222879

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 231   ctttgaaaatggctacttttta 252
             ||||||||||||||||||||||
Sbjct: 86133 ctttgaaaatggctacttttta 86112
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>gb|AC163225.4| Mus musculus chromosome 8, clone RP23-319L22, complete sequence
          Length = 192661

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 80    tgagaggaaagaatatgtcatagatggcc 108
             |||||| |||||||||| |||||||||||
Sbjct: 65911 tgagagcaaagaatatgacatagatggcc 65939
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>emb|AL604027.9| Mouse DNA sequence from clone RP23-155G20 on chromosome 11, complete
              sequence
          Length = 196398

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 247    tttttagatttctgcggtttgaagatgtt 275
              |||| |||||||||||||||||| |||||
Sbjct: 166372 ttttgagatttctgcggtttgaacatgtt 166344
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>gb|AC090987.5| Homo sapiens chromosome 8, clone RP11-269I24, complete sequence
          Length = 153805

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 262   ggtttgaagatgttggccttg 282
             |||||||||||||||||||||
Sbjct: 42394 ggtttgaagatgttggccttg 42374
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>ref|XM_224299.3| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933425F03
            (predicted) (LOC305974), mRNA
          Length = 2138

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 425  agaagatggctgcaagctgtg 445
            |||||||||||||||||||||
Sbjct: 1680 agaagatggctgcaagctgtg 1660
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>gb|AC068607.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-392C14, complete
              sequence
          Length = 218081

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    aaactaccttcccaatcctg 171
              ||||||||||||||||||||
Sbjct: 152453 aaactaccttcccaatcctg 152434
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>gb|AC146008.3| Pan troglodytes BAC clone RP43-13N15 from 7, complete sequence
          Length = 151195

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   ccatgtcgcctttgaaaatg 241
             ||||||||||||||||||||
Sbjct: 93116 ccatgtcgcctttgaaaatg 93135
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>emb|CR974574.10| Pig DNA sequence from clone CH242-93P8 on chromosome 7, complete
             sequence
          Length = 66478

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 431   tggctgcaagctgtggcata 450
             ||||||||||||||||||||
Sbjct: 51850 tggctgcaagctgtggcata 51831
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>gb|AC126028.4| Mus musculus BAC clone RP24-542M6 from chromosome 15, complete sequence
          Length = 168344

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    actgctcacatcaacaatca 418
              ||||||||||||||||||||
Sbjct: 143724 actgctcacatcaacaatca 143743
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>gb|AC004852.2| Homo sapiens PAC clone RP4-668E10 from 7, complete sequence
          Length = 158541

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    ccatgtcgcctttgaaaatg 241
              ||||||||||||||||||||
Sbjct: 158225 ccatgtcgcctttgaaaatg 158206
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>emb|CR956634.3| Pig DNA sequence from clone CH242-277I8 on chromosome 17, complete
             sequence
          Length = 206278

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   tggctgcaagctgtggcata 450
             ||||||||||||||||||||
Sbjct: 58072 tggctgcaagctgtggcata 58091
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>emb|X69184.1|APTUBA2A A.pyhllitidis mRNA for alpha-tubulin 2
          Length = 1374

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 92  atatgtcatagatggcctca 111
           ||||||||||||||||||||
Sbjct: 384 atatgtcatagatggcctca 365
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>emb|BX942837.5| Zebrafish DNA sequence from clone CH211-224B23 in linkage group 5,
             complete sequence
          Length = 183605

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 232   tttgaaaatggctactttttagat 255
             |||||||| |||||||||||||||
Sbjct: 15429 tttgaaaagggctactttttagat 15452
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>emb|CR387990.9| Opossum DNA sequence from clone XX-068C1, complete sequence
          Length = 118866

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    tgtgagagtgagaggaaaga 91
             ||||||||||||||||||||
Sbjct: 55172 tgtgagagtgagaggaaaga 55153
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>emb|CR387999.7| Opossum DNA sequence from clone XX-158F12, complete sequence
          Length = 169093

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     tgtgagagtgagaggaaaga 91
              ||||||||||||||||||||
Sbjct: 128839 tgtgagagtgagaggaaaga 128858
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>gb|AC153606.3| Mus musculus 6 BAC RP23-252F12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 203410

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    tggctactttttagatttct 259
              ||||||||||||||||||||
Sbjct: 179998 tggctactttttagatttct 180017
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>gb|AC146009.3| Pan troglodytes BAC clone RP43-13O12 from chromosome 7, complete
             sequence
          Length = 169801

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   ccatgtcgcctttgaaaatg 241
             ||||||||||||||||||||
Sbjct: 82962 ccatgtcgcctttgaaaatg 82981
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>gb|AC153994.8| Mus musculus 6 BAC RP24-178H18 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 179333

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    tggctactttttagatttct 259
              ||||||||||||||||||||
Sbjct: 165979 tggctactttttagatttct 165960
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>emb|BX000437.7| Zebrafish DNA sequence from clone DKEY-106O5 in linkage group 5,
            complete sequence
          Length = 178961

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 232  tttgaaaatggctactttttagat 255
            |||||||| |||||||||||||||
Sbjct: 5439 tttgaaaagggctactttttagat 5416
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>gb|AY449460.1| Oikopleura dioica clone BACOIKO004 7xk22, complete sequence
          Length = 131867

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   catgtcgcctttgaaaatgg 242
             ||||||||||||||||||||
Sbjct: 68524 catgtcgcctttgaaaatgg 68543
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>gb|AC144632.4| Mus musculus BAC clone RP23-106G16 from chromosome 15, complete sequence
          Length = 206265

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    actgctcacatcaacaatca 418
              ||||||||||||||||||||
Sbjct: 159586 actgctcacatcaacaatca 159567


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,802,486
Number of Sequences: 3902068
Number of extensions: 4802486
Number of successful extensions: 89246
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89161
Number of HSP's gapped (non-prelim): 84
length of query: 559
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 536
effective length of database: 17,143,297,704
effective search space: 9188807569344
effective search space used: 9188807569344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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