ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd24b04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483143.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2616 Score = 79.8 bits (40), Expect = 8e-12 Identities = 115/140 (82%) Strand = Plus / Minus Query: 273 gtccacgagtagagctcccgctccggcacgccgacctcgaacttgaccaggccggagccg 332 ||||| |||||||| || ||||||||||| ||| ||||||| |||||| |||| | || Sbjct: 2344 gtccaggagtagagttcttgctccggcacggcgagctcgaacgtgaccaagccgcatcca 2285 Query: 333 tcgtcgtaggagaaaccaaccgccaccgaatccaccgccacgctcttcggcctcgccgag 392 || ||||||||||| | ||||| ||||||||||| |||| ||| |||| |||||||| Sbjct: 2284 tcatcgtaggagaattccgccgcctccgaatccaccaccaccctcgccggcttcgccgag 2225 Query: 393 gagtaggctccaaccgtgcc 412 ||||| || || |||||||| Sbjct: 2224 gagtacgccccgaccgtgcc 2205
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 79.8 bits (40), Expect = 8e-12 Identities = 115/140 (82%) Strand = Plus / Minus Query: 273 gtccacgagtagagctcccgctccggcacgccgacctcgaacttgaccaggccggagccg 332 ||||| |||||||| || ||||||||||| ||| ||||||| |||||| |||| | || Sbjct: 24471985 gtccaggagtagagttcttgctccggcacggcgagctcgaacgtgaccaagccgcatcca 24471926 Query: 333 tcgtcgtaggagaaaccaaccgccaccgaatccaccgccacgctcttcggcctcgccgag 392 || ||||||||||| | ||||| ||||||||||| |||| ||| |||| |||||||| Sbjct: 24471925 tcatcgtaggagaattccgccgcctccgaatccaccaccaccctcgccggcttcgccgag 24471866 Query: 393 gagtaggctccaaccgtgcc 412 ||||| || || |||||||| Sbjct: 24471865 gagtacgccccgaccgtgcc 24471846
>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1142B04 Length = 161964 Score = 79.8 bits (40), Expect = 8e-12 Identities = 115/140 (82%) Strand = Plus / Minus Query: 273 gtccacgagtagagctcccgctccggcacgccgacctcgaacttgaccaggccggagccg 332 ||||| |||||||| || ||||||||||| ||| ||||||| |||||| |||| | || Sbjct: 87701 gtccaggagtagagttcttgctccggcacggcgagctcgaacgtgaccaagccgcatcca 87642 Query: 333 tcgtcgtaggagaaaccaaccgccaccgaatccaccgccacgctcttcggcctcgccgag 392 || ||||||||||| | ||||| ||||||||||| |||| ||| |||| |||||||| Sbjct: 87641 tcatcgtaggagaattccgccgcctccgaatccaccaccaccctcgccggcttcgccgag 87582 Query: 393 gagtaggctccaaccgtgcc 412 ||||| || || |||||||| Sbjct: 87581 gagtacgccccgaccgtgcc 87562
>dbj|AK067229.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096C15, full insert sequence Length = 2616 Score = 79.8 bits (40), Expect = 8e-12 Identities = 115/140 (82%) Strand = Plus / Minus Query: 273 gtccacgagtagagctcccgctccggcacgccgacctcgaacttgaccaggccggagccg 332 ||||| |||||||| || ||||||||||| ||| ||||||| |||||| |||| | || Sbjct: 2344 gtccaggagtagagttcttgctccggcacggcgagctcgaacgtgaccaagccgcatcca 2285 Query: 333 tcgtcgtaggagaaaccaaccgccaccgaatccaccgccacgctcttcggcctcgccgag 392 || ||||||||||| | ||||| ||||||||||| |||| ||| |||| |||||||| Sbjct: 2284 tcatcgtaggagaattccgccgcctccgaatccaccaccaccctcgccggcttcgccgag 2225 Query: 393 gagtaggctccaaccgtgcc 412 ||||| || || |||||||| Sbjct: 2224 gagtacgccccgaccgtgcc 2205
>gb|AF251068.2| Oryza sativa (japonica cultivar-group) alkaline alpha-galactosidase mRNA, complete cds Length = 2694 Score = 79.8 bits (40), Expect = 8e-12 Identities = 115/140 (82%) Strand = Plus / Minus Query: 273 gtccacgagtagagctcccgctccggcacgccgacctcgaacttgaccaggccggagccg 332 ||||| |||||||| || ||||||||||| ||| ||||||| |||||| |||| | || Sbjct: 2425 gtccaggagtagagttcttgctccggcacggcgagctcgaacgtgaccaagccgcatcca 2366 Query: 333 tcgtcgtaggagaaaccaaccgccaccgaatccaccgccacgctcttcggcctcgccgag 392 || ||||||||||| | ||||| ||||||||||| |||| ||| |||| |||||||| Sbjct: 2365 tcatcgtaggagaattccgccgcctccgaatccaccaccaccctcgccggcttcgccgag 2306 Query: 393 gagtaggctccaaccgtgcc 412 ||||| || || |||||||| Sbjct: 2305 gagtacgccccgaccgtgcc 2286
>gb|AC092180.5| Homo sapiens BAC clone RP11-1375C19 from 7, complete sequence Length = 85275 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 164 ttcttgccaaagaaaaacattcagaa 189 |||||||||||||||||||||||||| Sbjct: 24890 ttcttgccaaagaaaaacattcagaa 24915
>ref|NM_001008408.1| Homo sapiens RNA binding motif protein 33 (RBM33), mRNA Length = 7165 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 108 acagcttccccaatccccaggcc 130 ||||||||||||||||||||||| Sbjct: 4039 acagcttccccaatccccaggcc 4017
>gb|AC078834.5| Homo sapiens BAC clone RP11-69O3 from 7, complete sequence Length = 154737 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 108 acagcttccccaatccccaggcc 130 ||||||||||||||||||||||| Sbjct: 70275 acagcttccccaatccccaggcc 70253
>ref|XM_757247.1| Ustilago maydis 521 hypothetical protein (UM06193.1) partial mRNA Length = 1428 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 352 ccgccaccgaatccaccgccacg 374 ||||||||||||||||||||||| Sbjct: 1268 ccgccaccgaatccaccgccacg 1246
>gb|AC005032.2|AC005032 Homo sapiens unknown clone LLcos-150F1, complete sequence Length = 25796 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 108 acagcttccccaatccccaggcc 130 ||||||||||||||||||||||| Sbjct: 10255 acagcttccccaatccccaggcc 10233
>emb|X87948.1|VURNAGRP V.unguiculata mRNA for glycin-rich protein Length = 1389 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 351 accgccaccgaatccaccgccac 373 ||||||||||||||||||||||| Sbjct: 1140 accgccaccgaatccaccgccac 1118
>emb|AL832196.1|HSM803503 Homo sapiens mRNA; cDNA DKFZp686F102 (from clone DKFZp686F102) Length = 7165 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 108 acagcttccccaatccccaggcc 130 ||||||||||||||||||||||| Sbjct: 4039 acagcttccccaatccccaggcc 4017
>ref|XM_612564.2| PREDICTED: Bos taurus similar to Ethanolamine kinase-like protein EKI2 (LOC533229), mRNA Length = 2999 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 285 agctcccgctccggcacgccgacctc 310 |||||||||||| ||||||||||||| Sbjct: 959 agctcccgctccagcacgccgacctc 934
>ref|NM_186147.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3033 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 370 ccacgctcttcggcctcgccg 390 ||||||||||||||||||||| Sbjct: 647 ccacgctcttcggcctcgccg 667
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 gccggagccgtcgtcgtagga 343 ||||||||||||||||||||| Sbjct: 2116873 gccggagccgtcgtcgtagga 2116893
>ref|NM_007936.3| Mus musculus Eph receptor A4 (Epha4), mRNA Length = 6328 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 gccaaagaaaaacattcagaa 189 ||||||||||||||||||||| Sbjct: 3951 gccaaagaaaaacattcagaa 3931
>gb|BC052164.1| Mus musculus Eph receptor A4, mRNA (cDNA clone MGC:59362 IMAGE:6512978), complete cds Length = 5567 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 gccaaagaaaaacattcagaa 189 ||||||||||||||||||||| Sbjct: 3923 gccaaagaaaaacattcagaa 3903
>emb|X65138.1|MMSEK M.musculus mRNA for tyrosine kinase Length = 4242 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 gccaaagaaaaacattcagaa 189 ||||||||||||||||||||| Sbjct: 3951 gccaaagaaaaacattcagaa 3931
>gb|AC010091.2| Homo sapiens BAC clone RP11-295A1 from 7, complete sequence Length = 56864 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 ttgccaaagaaaaacattcag 187 ||||||||||||||||||||| Sbjct: 53003 ttgccaaagaaaaacattcag 52983
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 371 cacgctcttcggcctcgccga 391 ||||||||||||||||||||| Sbjct: 3176393 cacgctcttcggcctcgccga 3176413
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 317 gaccaggccggagccgtcgtcgtag 341 |||||||||| |||||||||||||| Sbjct: 160289 gaccaggccgaagccgtcgtcgtag 160265
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 317 gaccaggccggagccgtcgtcgtag 341 |||||||||| |||||||||||||| Sbjct: 71249 gaccaggccgaagccgtcgtcgtag 71225
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 317 gaccaggccggagccgtcgtcgtag 341 |||||||||| |||||||||||||| Sbjct: 343409 gaccaggccgaagccgtcgtcgtag 343385
>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence Length = 144144 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 ccgaggagtaggctccaaccgtgcc 412 ||||||||||||||||| ||||||| Sbjct: 17401 ccgaggagtaggctccatccgtgcc 17377
>gb|AF293355.2| Streptomyces collinus DSM2012 rubrinomycin gene cluster, complete sequence Length = 32634 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 caggcccggcttcggcacact 145 ||||||||||||||||||||| Sbjct: 26477 caggcccggcttcggcacact 26497
>gb|AC117535.2| Homo sapiens chromosome 5 clone RP11-937M12, complete sequence Length = 176581 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 ggcagaagatcttgcctcagt 258 ||||||||||||||||||||| Sbjct: 114428 ggcagaagatcttgcctcagt 114408
>gb|AC108126.2| Homo sapiens chromosome 5 clone RP11-613D17, complete sequence Length = 85638 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 ggcagaagatcttgcctcagt 258 ||||||||||||||||||||| Sbjct: 26677 ggcagaagatcttgcctcagt 26697
>dbj|AK147698.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1109J03 product:Eph receptor A4, full insert sequence Length = 6324 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 gccaaagaaaaacattcagaa 189 ||||||||||||||||||||| Sbjct: 3947 gccaaagaaaaacattcagaa 3927
>gb|S57168.1| Sek=Eph-related receptor protein tyrosine kinase [mice, mRNA, 4242 nt] Length = 4242 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 gccaaagaaaaacattcagaa 189 ||||||||||||||||||||| Sbjct: 3951 gccaaagaaaaacattcagaa 3931
>dbj|AK032223.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430505H07 product:Eph receptor A4, full insert sequence Length = 2797 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 gccaaagaaaaacattcagaa 189 ||||||||||||||||||||| Sbjct: 1255 gccaaagaaaaacattcagaa 1235
>dbj|AK028509.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4632410M06 product:Eph receptor A4, full insert sequence Length = 4353 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 gccaaagaaaaacattcagaa 189 ||||||||||||||||||||| Sbjct: 3944 gccaaagaaaaacattcagaa 3924
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 ccgaggagtaggctccaaccgtgcc 412 ||||||||||||||||| ||||||| Sbjct: 5041128 ccgaggagtaggctccatccgtgcc 5041104
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 370 ccacgctcttcggcctcgccg 390 ||||||||||||||||||||| Sbjct: 424743 ccacgctcttcggcctcgccg 424763
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 318 accaggccggagccgtcgtcg 338 ||||||||||||||||||||| Sbjct: 8934091 accaggccggagccgtcgtcg 8934071
>ref|XM_244186.3| PREDICTED: Rattus norvegicus similar to Eph receptor A4 (LOC316539), mRNA Length = 5496 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 gccaaagaaaaacattcagaa 189 ||||||||||||||||||||| Sbjct: 3964 gccaaagaaaaacattcagaa 3944
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 364 ccaccgccacgctcttcggcctcgccgag 392 |||||||||||| | |||||||||||||| Sbjct: 4095407 ccaccgccacgcacctcggcctcgccgag 4095379
>gb|AC137484.2| Rattus Norvegicus Strain BN/SsNHsd/MCW BAC, CH230-349A03, complete sequence Length = 164897 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 gccaaagaaaaacattcagaa 189 ||||||||||||||||||||| Sbjct: 150932 gccaaagaaaaacattcagaa 150952
>gb|AF497512.1| Zea mays alkaline alpha galactosidase 3 mRNA, complete cds Length = 2483 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 tcgtaggagaaaccaaccgcc 356 ||||||||||||||||||||| Sbjct: 2265 tcgtaggagaaaccaaccgcc 2245
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0585H11 Length = 149371 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 370 ccacgctcttcggcctcgccg 390 ||||||||||||||||||||| Sbjct: 26907 ccacgctcttcggcctcgccg 26927
>dbj|AB026639.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L13 Length = 63921 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 74 gcaacgtctgcaagaagccaagaac 98 |||| |||||||||||||||||||| Sbjct: 27543 gcaaggtctgcaagaagccaagaac 27519
>dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108O10, full insert sequence Length = 3392 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 370 ccacgctcttcggcctcgccg 390 ||||||||||||||||||||| Sbjct: 773 ccacgctcttcggcctcgccg 793
>gb|AC116730.7| Mus musculus chromosome 1, clone RP23-346J11, complete sequence Length = 208503 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 gccaaagaaaaacattcagaa 189 ||||||||||||||||||||| Sbjct: 186611 gccaaagaaaaacattcagaa 186591
>emb|AL807808.12| Mouse DNA sequence from clone RP23-382D10 on chromosome 4, complete sequence Length = 198460 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 agaagccaagaacaaagacat 106 ||||||||||||||||||||| Sbjct: 19803 agaagccaagaacaaagacat 19783
>gb|AC164875.14| Mus musculus chromosome 1, clone RP23-59P14, complete sequence Length = 250957 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 gccaaagaaaaacattcagaa 189 ||||||||||||||||||||| Sbjct: 10084 gccaaagaaaaacattcagaa 10064
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 gctccggcacgccgacctcg 311 |||||||||||||||||||| Sbjct: 435737 gctccggcacgccgacctcg 435718
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 gaccaggccggagccgtcgt 336 |||||||||||||||||||| Sbjct: 188638 gaccaggccggagccgtcgt 188619
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 365 caccgccacgctcttcggcctcgc 388 ||||||||||||| |||||||||| Sbjct: 3327421 caccgccacgctcatcggcctcgc 3327444
>gb|AC099654.5| Homo sapiens BAC clone RP11-1217F2 from 7, complete sequence Length = 149259 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 cccaatccccaggcccggct 135 |||||||||||||||||||| Sbjct: 51704 cccaatccccaggcccggct 51723
>gb|DP000038.2| Colobus guereza target 106 genomic scaffold Length = 481828 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 gccaagaacaaagacatcac 109 |||||||||||||||||||| Sbjct: 25053 gccaagaacaaagacatcac 25034
>emb|AL139092.12| Human DNA sequence from clone RP11-420G6 on chromosome 6 Contains the gene for werners helicase interacting protein (WHIP) (RUVBL), the SERPINB1 gene for serine (or cysteine) proteinase inhibitor clade B (ovalbumin) member 1, a putative novel gene and the 3' end of a putative novel gene, complete sequence Length = 168147 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 ttgccaaagaaaaacattcagaac 190 ||||||||||||||||| |||||| Sbjct: 13655 ttgccaaagaaaaacatgcagaac 13632
>gb|AC072051.8| Homo sapiens chromosome , clone RP11-79D21, complete sequence Length = 157284 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 acagcttccccaatccccag 127 |||||||||||||||||||| Sbjct: 21621 acagcttccccaatccccag 21640
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 gctccggcacgccgacctcg 311 |||||||||||||||||||| Sbjct: 2962959 gctccggcacgccgacctcg 2962978
>gb|DP000048.1| Cercopithecus aethiops target 106 genomic scaffold Length = 583711 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 gccaagaacaaagacatcac 109 |||||||||||||||||||| Sbjct: 43428 gccaagaacaaagacatcac 43409
>gb|AC147335.2| Pan troglodytes BAC clone RP43-4C1 from chromosome 7, complete sequence Length = 186272 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gcttccccaatccccaggcc 130 |||||||||||||||||||| Sbjct: 48695 gcttccccaatccccaggcc 48714
>gb|AF490536.1| Bothrops insularis cluster BITS01A serine proteinase precursor, mRNA, complete cds Length = 1539 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 aacgtctgcaagaagccaag 95 |||||||||||||||||||| Sbjct: 1288 aacgtctgcaagaagccaag 1269
>gb|AC009802.13|AC009802 Homo sapiens chromosome 18, clone RP11-793J2, complete sequence Length = 191395 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 acagcttccccaatccccag 127 |||||||||||||||||||| Sbjct: 159303 acagcttccccaatccccag 159322
>emb|AL354046.5|HS121M24 Homo sapiens chromosome 17 from PAC RPCI-1 121M24 map 17p11. region D17S842-D17S953, complete sequence Length = 185415 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 gaaaaacattcagaaccccc 194 |||||||||||||||||||| Sbjct: 29790 gaaaaacattcagaaccccc 29809
>gb|AC006251.3|AC006251 Homo sapiens chromosome 17, clone hRPK.692_E_18, complete sequence Length = 125099 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 gaaaaacattcagaaccccc 194 |||||||||||||||||||| Sbjct: 60904 gaaaaacattcagaaccccc 60885 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,734,690 Number of Sequences: 3902068 Number of extensions: 3734690 Number of successful extensions: 70522 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69959 Number of HSP's gapped (non-prelim): 563 length of query: 487 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 465 effective length of database: 17,147,199,772 effective search space: 7973447893980 effective search space used: 7973447893980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
