ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor ... 75 2e-13
214KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor 63 5e-10
3PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein 49 9e-06
4HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly... 35 0.14
5MUTS_BACC1 (P61665) DNA mismatch repair protein mutS 29 7.6
6MUTS_BACAN (Q81WR3) DNA mismatch repair protein mutS 29 7.6
7MUTS_BACHK (Q6HF46) DNA mismatch repair protein mutS 29 7.6
8MUTS_BACCZ (Q636Q7) DNA mismatch repair protein mutS 29 7.6

>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific|
           protein ZRP3)
          Length = 129

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 39/85 (45%), Positives = 49/85 (57%)
 Frame = -3

Query: 482 GSCSINTLKLGVCANVLNLLKLKIGVPANEQXXXXXXXXXXXXXXXXXXXAIRANILGIK 303
           G C I+ LKL VCA VL L+K  +G+P  EQ                   AI+AN+LGI 
Sbjct: 46  GRCPIDALKLKVCAKVLGLVK--VGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGIH 103

Query: 302 LNVPIDLTLLLNQCGKKCPANFTCP 228
           LNVP+ L  +LN CG+ CP +FTCP
Sbjct: 104 LNVPLSLNFILNNCGRICPEDFTCP 128



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>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor|
          Length = 137

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 37/85 (43%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = -3

Query: 482 GSCSINTLKLGVCANVLNLL-KLKIGVPANEQXXXXXXXXXXXXXXXXXXXAIRANILGI 306
           G C  + LKLGVCA+VLNL+  + IG P                       AI+ANILG 
Sbjct: 52  GKCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGK 111

Query: 305 KLNVPIDLTLLLNQCGKKCPANFTC 231
            LN+PI L+L+LN CGK+ P  F C
Sbjct: 112 NLNLPIALSLVLNNCGKQVPNGFEC 136



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>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 48.9 bits (115), Expect = 9e-06
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = -3

Query: 479 SCSINTLKLGVCANVLN-LLKLKIGVPANEQXXXXXXXXXXXXXXXXXXXAIRANILGIK 303
           +C I+ LKLG C +VL  L+ + IG  A +                     IR  +L I 
Sbjct: 260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNIN 319

Query: 302 LNVPIDLTLLLNQCGKKCPANFTCP 228
           + +PI L +L++ CGK  P +F CP
Sbjct: 320 IILPIALQVLIDDCGKYPPKDFKCP 344



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>HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly m 1)|
          Length = 80

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -3

Query: 329 IRANILGIKLNVPIDLTLLLNQCGKKCPANFTCP 228
           I+   LGI LN+  +L L+LN CG+  P+N TCP
Sbjct: 46  IQLRALGI-LNLNRNLQLILNSCGRSYPSNATCP 78



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>MUTS_BACC1 (P61665) DNA mismatch repair protein mutS|
          Length = 892

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 18  LLQICKSCI*IPYNEKKMTLISQAYQACMHKRASPCKRLTYQL*R 152
           LLQ+ +S + +P   + ++L+  AY A + + A PC+ LT  L R
Sbjct: 356 LLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPCESLTELLGR 400



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>MUTS_BACAN (Q81WR3) DNA mismatch repair protein mutS|
          Length = 892

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 18  LLQICKSCI*IPYNEKKMTLISQAYQACMHKRASPCKRLTYQL*R 152
           LLQ+ +S + +P   + ++L+  AY A + + A PC+ LT  L R
Sbjct: 356 LLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPCESLTELLGR 400



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>MUTS_BACHK (Q6HF46) DNA mismatch repair protein mutS|
          Length = 890

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 18  LLQICKSCI*IPYNEKKMTLISQAYQACMHKRASPCKRLTYQL*R 152
           LLQ+ +S + +P   + ++L+  AY A + + A PC+ LT  L R
Sbjct: 356 LLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPCESLTELLGR 400



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>MUTS_BACCZ (Q636Q7) DNA mismatch repair protein mutS|
          Length = 894

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 18  LLQICKSCI*IPYNEKKMTLISQAYQACMHKRASPCKRLTYQL*R 152
           LLQ+ +S + +P   + ++L+  AY A + + A PC+ LT  L R
Sbjct: 356 LLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPCESLTELLGR 400


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,963,628
Number of Sequences: 219361
Number of extensions: 910456
Number of successful extensions: 2245
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2242
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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