Clone Name | rbasd24b02 |
---|---|
Clone Library Name | barley_pub |
>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific| protein ZRP3) Length = 129 Score = 74.7 bits (182), Expect = 2e-13 Identities = 39/85 (45%), Positives = 49/85 (57%) Frame = -3 Query: 482 GSCSINTLKLGVCANVLNLLKLKIGVPANEQXXXXXXXXXXXXXXXXXXXAIRANILGIK 303 G C I+ LKL VCA VL L+K +G+P EQ AI+AN+LGI Sbjct: 46 GRCPIDALKLKVCAKVLGLVK--VGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGIH 103 Query: 302 LNVPIDLTLLLNQCGKKCPANFTCP 228 LNVP+ L +LN CG+ CP +FTCP Sbjct: 104 LNVPLSLNFILNNCGRICPEDFTCP 128
>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor| Length = 137 Score = 63.2 bits (152), Expect = 5e-10 Identities = 37/85 (43%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Frame = -3 Query: 482 GSCSINTLKLGVCANVLNLL-KLKIGVPANEQXXXXXXXXXXXXXXXXXXXAIRANILGI 306 G C + LKLGVCA+VLNL+ + IG P AI+ANILG Sbjct: 52 GKCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGK 111 Query: 305 KLNVPIDLTLLLNQCGKKCPANFTC 231 LN+PI L+L+LN CGK+ P F C Sbjct: 112 NLNLPIALSLVLNNCGKQVPNGFEC 136
>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein| Length = 346 Score = 48.9 bits (115), Expect = 9e-06 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Frame = -3 Query: 479 SCSINTLKLGVCANVLN-LLKLKIGVPANEQXXXXXXXXXXXXXXXXXXXAIRANILGIK 303 +C I+ LKLG C +VL L+ + IG A + IR +L I Sbjct: 260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNIN 319 Query: 302 LNVPIDLTLLLNQCGKKCPANFTCP 228 + +PI L +L++ CGK P +F CP Sbjct: 320 IILPIALQVLIDDCGKYPPKDFKCP 344
>HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly m 1)| Length = 80 Score = 35.0 bits (79), Expect = 0.14 Identities = 17/34 (50%), Positives = 23/34 (67%) Frame = -3 Query: 329 IRANILGIKLNVPIDLTLLLNQCGKKCPANFTCP 228 I+ LGI LN+ +L L+LN CG+ P+N TCP Sbjct: 46 IQLRALGI-LNLNRNLQLILNSCGRSYPSNATCP 78
>MUTS_BACC1 (P61665) DNA mismatch repair protein mutS| Length = 892 Score = 29.3 bits (64), Expect = 7.6 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = +3 Query: 18 LLQICKSCI*IPYNEKKMTLISQAYQACMHKRASPCKRLTYQL*R 152 LLQ+ +S + +P + ++L+ AY A + + A PC+ LT L R Sbjct: 356 LLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPCESLTELLGR 400
>MUTS_BACAN (Q81WR3) DNA mismatch repair protein mutS| Length = 892 Score = 29.3 bits (64), Expect = 7.6 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = +3 Query: 18 LLQICKSCI*IPYNEKKMTLISQAYQACMHKRASPCKRLTYQL*R 152 LLQ+ +S + +P + ++L+ AY A + + A PC+ LT L R Sbjct: 356 LLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPCESLTELLGR 400
>MUTS_BACHK (Q6HF46) DNA mismatch repair protein mutS| Length = 890 Score = 29.3 bits (64), Expect = 7.6 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = +3 Query: 18 LLQICKSCI*IPYNEKKMTLISQAYQACMHKRASPCKRLTYQL*R 152 LLQ+ +S + +P + ++L+ AY A + + A PC+ LT L R Sbjct: 356 LLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPCESLTELLGR 400
>MUTS_BACCZ (Q636Q7) DNA mismatch repair protein mutS| Length = 894 Score = 29.3 bits (64), Expect = 7.6 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = +3 Query: 18 LLQICKSCI*IPYNEKKMTLISQAYQACMHKRASPCKRLTYQL*R 152 LLQ+ +S + +P + ++L+ AY A + + A PC+ LT L R Sbjct: 356 LLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPCESLTELLGR 400 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,963,628 Number of Sequences: 219361 Number of extensions: 910456 Number of successful extensions: 2245 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 2216 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2242 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)