>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  187 bits (476), Expect = 1e-47
 Identities = 93/107 (86%), Positives = 93/107 (86%)
 Frame = -2

Query: 480 KPSSXXXLQRSKLXGVRPSXRPSLVIXXXXXXXVQTAQPYGPGGGVAFKEGVDASGRVAK 301
           KPSS   LQRSKL GVRPS RPSLVI       VQTAQPYGPGGGVAFKEGVDASGRVAK
Sbjct: 12  KPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAK 71

Query: 300 GKGVYQFADKYGANVDGYSPIYTTXEWSPSGDVYVGGKTGLFLWAVT 160
           GKGVYQFADKYGANVDGYSPIYT  EWSPSGDVYVGGKTGLFLWAVT
Sbjct: 72  GKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 118

>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (Light-inducible tissue-specific ST-LS1 protein)
          Length = 138

 Score =  120 bits (302), Expect = 1e-27
 Identities = 58/102 (56%), Positives = 72/102 (70%), Gaps = 2/102 (1%)
 Frame = -2

Query: 459 LQRSKLXGVRPSXRPS--LVIXXXXXXXVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVY 286
           L+++ + G+    R S    +       ++T +PYG  G +A ++GVDASGR  KGKGVY
Sbjct: 17  LEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVY 76

Query: 285 QFADKYGANVDGYSPIYTTXEWSPSGDVYVGGKTGLFLWAVT 160
           Q+ DKYGANVDGYSPIY T EWSPSGDVYVGG TGL +WAVT
Sbjct: 77  QYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVT 118

>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  120 bits (301), Expect = 2e-27
 Identities = 54/73 (73%), Positives = 61/73 (83%)
 Frame = -2

Query: 378 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTTXEWSPSGDVY 199
           +T +PYG  G +A ++GVDASGR  KGKGVYQ+ DKYGANVDGYSPIY T EWSPSGDVY
Sbjct: 46  KTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105

Query: 198 VGGKTGLFLWAVT 160
           VGG TGL +WAVT
Sbjct: 106 VGGTTGLAIWAVT 118

>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (PII10)
          Length = 136

 Score =  119 bits (298), Expect = 4e-27
 Identities = 53/73 (72%), Positives = 61/73 (83%)
 Frame = -2

Query: 378 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTTXEWSPSGDVY 199
           +T +PYG  G ++ ++GVDASGR  KGKGVYQF DKYGANVDGYSPIY T +WSPSGDVY
Sbjct: 44  KTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVY 103

Query: 198 VGGKTGLFLWAVT 160
           VGG TGL +WAVT
Sbjct: 104 VGGTTGLAIWAVT 116

>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  114 bits (286), Expect = 1e-25
 Identities = 56/109 (51%), Positives = 70/109 (64%), Gaps = 2/109 (1%)
 Frame = -2

Query: 480 KPSSXXXLQRSKLXGVRPSXRPS--LVIXXXXXXXVQTAQPYGPGGGVAFKEGVDASGRV 307
           KPSS     +S + G+    R S    +       ++  +P G GGG+  ++GVD+SGR 
Sbjct: 12  KPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRK 71

Query: 306 AKGKGVYQFADKYGANVDGYSPIYTTXEWSPSGDVYVGGKTGLFLWAVT 160
             GKGVYQF DKYGANVDGYSPIY   EW+P+GDVY GG TGL +WAVT
Sbjct: 72  PTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120

>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  109 bits (272), Expect = 4e-24
 Identities = 51/87 (58%), Positives = 61/87 (70%)
 Frame = -2

Query: 420 RPSLVIXXXXXXXVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSP 241
           RPS  I       ++T +P+G  G +  ++GVDASGR  KG GVY++ DKYGANVDGYSP
Sbjct: 34  RPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSP 93

Query: 240 IYTTXEWSPSGDVYVGGKTGLFLWAVT 160
           IY   EWS SGDVY GG TGL +WAVT
Sbjct: 94  IYNENEWSASGDVYKGGVTGLAIWAVT 120

>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 141

 Score =  106 bits (264), Expect = 4e-23
 Identities = 48/73 (65%), Positives = 56/73 (76%)
 Frame = -2

Query: 378 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTTXEWSPSGDVY 199
           +T +P+G  G +  ++GVDASGR  KG GVY+F DKYGANVDGYSPIY   EWS SGDVY
Sbjct: 49  KTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVY 108

Query: 198 VGGKTGLFLWAVT 160
            GG TGL +WAVT
Sbjct: 109 KGGVTGLAIWAVT 121

>AFSK_STRCO (P54741) Serine/threonine protein kinase afsK (EC 2.7.11.1)|
          Length = 799

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 31/101 (30%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
 Frame = +2

Query: 134 APPSRIPA---RVTAQRNSPVFPPT*TSPLGDHSXVVYIGLYPSTFAP---YLSANW*TP 295
           APP+ +PA    V A    PV  P    P+G    V  +        P    L+A+W  P
Sbjct: 341 APPAHVPAVPAPVGAPDGGPVRLPGAAVPIGPGPRVADMRAAAVAAPPPESALAASWSRP 400

Query: 296 FPLATLPDASTPSLNATPPPG-P*GWAVWTFFAFLATMTND 415
            P     D + P+    PP   P GW  W F      M+ND
Sbjct: 401 RPGVNGADPAVPAPAPAPPEASPAGWRPWRF-----RMSND 436

>IF2_CORGL (Q8NP40) Translation initiation factor IF-2|
          Length = 1004

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 351 GGVAFKEGVDASGRVAKGKGVYQFADKYGAN 259
           GGV   +G  A+ R+A+G  +  FADK GA+
Sbjct: 400 GGVRLPDGKGATIRLARGASLADFADKIGAD 430

>CELR1_MOUSE (O35161) Cadherin EGF LAG seven-pass G-type receptor 1 precursor|
          Length = 3034

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -1

Query: 409  GHSGQEGEEGPDCPTLRAWWWSGVQGRRRCVWKGSQGEGCLPVCRQVWSKC 257
            GH GQ  E   D P  + WW + V G   C    +  +G  P C +   +C
Sbjct: 1954 GHYGQYCENKVDLPCPKGWWGNPVCGPCHC----AVSQGFDPDCNKTNGQC 2000

>ALB2_PEA (P08688) Albumin-2 (PA2)|
          Length = 231

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 348 GVAFKEGVDASGRVAKGKGVYQFADKYGANVD 253
           G  F+ G+DA+ R  +GK VY F     A +D
Sbjct: 114 GTVFENGIDAAYRSTRGKEVYLFKGDQYARID 145

>METX_RALSO (Q8Y3F3) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine|
           O-trans-acetylase) (Homoserine transacetylase) (HTA)
          Length = 403

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 378 QTAQPYGPGGGVAFKEG-VDASGRVAKGKGVYQFADKYGANVDG 250
           QT QPYG    V   E  V+A  RVA   G+ QFA   G ++ G
Sbjct: 138 QTGQPYGARFPVVTVEDWVNAQARVADRFGIRQFAAVMGGSLGG 181

>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)|
          Length = 606

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = +2

Query: 137 PPSRIPARVTAQRNSPV---FPPT*TSPLGDHSXVVYIGLYPSTFAPYLSANW*TPFPLA 307
           PP    A  T    SP+     P   SP G        G+ P   +   SA+   P PLA
Sbjct: 519 PPPSSAAAATGGSPSPIGGLIKPLAGSPTG--------GMPPHHPSRPDSASPPLPLPLA 570

Query: 308 TLPDASTPSLNATPPPG 358
             P   +P+LN   PPG
Sbjct: 571 RPPSTPSPTLNPGSPPG 587

>BCHZ_RHOGE (Q9JPB9) Chlorophyllide reductase subunit Z (EC 1.18.-.-) (Chlorin|
           reductase subunit Z)
          Length = 487

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +1

Query: 262 CSILVGKLVNTLPLGYPSRRIDAFLERHSTTRP 360
           C+ L   L N LPLG    RIDA   R   +RP
Sbjct: 396 CNALFDALFNILPLGTELDRIDATPSRRGDSRP 428

>DAK_PICAN (O60017) Dihydroxyacetone kinase (EC 2.7.1.29) (Glycerone kinase)|
           (DHA kinase)
          Length = 609

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 306 AKGKGVYQFADKYGANVDGYSPIYTTXEWSPSGDVYV 196
           A GK V+   D Y   V G++  YTT EW+   + +V
Sbjct: 337 AGGKEVFDCLD-YPTKVPGWNSSYTTAEWAAKSESFV 372

>GFI1_DROME (Q9N658) Zinc finger protein sens (Protein senseless)|
          Length = 541

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 117 YCRQEEHRPAEFQQESLPRETAPSFLQHKRRHLETT 224
           Y R +  +P + QQ+ L  +  P   QH+++H ++T
Sbjct: 351 YMRNQHQQPQQQQQQQLHHQQQPQQHQHQQQHPDST 386

>ZN440_HUMAN (Q8IYI8) Zinc finger protein 440|
          Length = 595

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
 Frame = +3

Query: 138 RPAEFQQESLPRETAPSFLQHKRRHLETTLXLC--------------I*GCTHQHL-LHT 272
           +P E+Q+      +  S+ +H+R H+      C              I   TH    L+ 
Sbjct: 254 KPYEYQECGKAFHSPRSYRRHERIHMGEKAYQCKECGKAFTCPRYVRIHERTHSRKNLYE 313

Query: 273 CRQTGKHPSPWLPFQTHRRL 332
           C+Q GK  S    FQTH RL
Sbjct: 314 CKQCGKALSSLTSFQTHVRL 333


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,037,081
Number of Sequences: 219361
Number of extensions: 1572730
Number of successful extensions: 5184
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5149
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)