ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24a24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein 868 0.0
2emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMW... 577 e-161
3emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMW... 373 e-100
4ref|XM_476619.1| Oryza sativa (japonica cultivar-group), mRNA 242 9e-61
5dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 9e-61
6dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 2e-58
7ref|XM_476620.1| Oryza sativa (japonica cultivar-group), mRNA 176 4e-41
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 119 9e-24
9dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic D... 119 9e-24
10gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (... 107 3e-20
11emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10 92 2e-15
12gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA 88 3e-14
13gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA 86 1e-13
14dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
15emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-speci... 80 8e-12
16gb|AY348557.1| Trifolium pratense 10 kDa photosystem II polypept... 66 1e-07
17emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD... 64 5e-07
18gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypep... 62 2e-06
19emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide p... 56 1e-04
20dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone... 52 0.002
21dbj|AP006396.1| Lotus japonicus genomic DNA, chromosome 3, clone... 52 0.002
22emb|X04753.1|STLS1G Potato light-inducible tissue-specific ST-LS... 46 0.11
23gb|AC153590.7| Mus musculus 6 BAC RP23-480O11 (Roswell Park Canc... 44 0.42
24dbj|AB090880.1| Aster tripolium mRNA for thiol protease, complet... 44 0.42
25ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 ... 42 1.7
26gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 1.7
27gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 1.7
28gb|AY096544.1| Arabidopsis thaliana putative photosystem II poly... 42 1.7
29gb|AY070103.1| Arabidopsis thaliana putative photosystem II poly... 42 1.7
30gb|AF035554.1|AF035554 Pisaster ochraceus protein kinase C-relat... 42 1.7
31emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Co... 42 1.7
32emb|BX813377.1|CNS0AC7S Arabidopsis thaliana Full-length cDNA Co... 42 1.7
33emb|BX813545.1|CNS0AC1I Arabidopsis thaliana Full-length cDNA Co... 42 1.7
34emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Co... 42 1.7
35emb|BX818517.1|CNS0AB2P Arabidopsis thaliana Full-length cDNA Co... 42 1.7
36emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Co... 42 1.7
37gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete ... 42 1.7
38emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 6... 42 1.7
39gb|L31936.1|BNABIF11G Brassica campestris ssp. pekinensis (clone... 42 1.7
40gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 6.5
41gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, co... 40 6.5
42gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
43gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, co... 40 6.5
44gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
45gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome... 40 6.5
46gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosom... 40 6.5
47emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section... 40 6.5
48emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N... 40 6.5
49gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, comple... 40 6.5
50gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 6.5
51dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
52dbj|AK119422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
53gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, comple... 40 6.5
54gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5 
>emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein
          Length = 575

 Score =  868 bits (438), Expect = 0.0
 Identities = 469/482 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgatattcgaatccattacatatgtcctgtctgttntaatccgcactattatacacat 60
           ||||||||| | ||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct: 539 agtgatatttgtatccattacatatgtcctgacggttataatccgcactattatacacat 480

                                                                       
Query: 61  cgttnggtgcatagcttggtttgctgcacataggcttcaggaagccaaggcgctagtact 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cgtttggtgcatagcttggtttgctgcacataggcttcaggaagccaaggcgctagtact 420

                                                                       
Query: 121 gtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaacag 360

                                                                       
Query: 181 ccccgtctttcctccaacataaacgtcgccacttggagaccactcttntgttgtgtatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 359 ccccgtctttcctccaacataaacgtcgccacttggagaccactcttctggtgtgtatat 300

                                                                       
Query: 241 agggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccc 240

                                                                       
Query: 301 cttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggccc 180

                                                                       
Query: 361 gtagggttgggcagtctggaccttcttcgccttcttggccactatgaccaacgacggcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gtagggttgggcagtctggaccttcttcgccttcttggccactatgaccaacgacggcct 120

                                                                       
Query: 421 cnccgatggtcgcacgcctncaagcttggatcgttgtaacananganaggaagatggttt 480
           | ||||||||||||||||| ||||||||||||||||||||| | || |||||||||||||
Sbjct: 119 cgccgatggtcgcacgcctccaagcttggatcgttgtaacagaggagaggaagatggttt 60

             
Query: 481 ca 482
           ||
Sbjct: 59  ca 58
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>emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMWG0658
          Length = 377

 Score =  577 bits (291), Expect = e-161
 Identities = 322/333 (96%), Gaps = 2/333 (0%)
 Strand = Plus / Minus

                                                                       
Query: 152 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgcca 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgcca 318

                                                                       
Query: 212 cttggagaccactcttntgttgtgtatatagggctgtacccatcaacatttgctccatac 271
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttggagaccactcttctggtgtgtatatagggctgtacccatcaacatttgctccatac 258

                                                                       
Query: 272 ttgtcgg-caaactggtaaacacccttccccttggctacccttcca-gacgcatcgacgc 329
           |||||||   |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 257 ttgtcggnhdaactggtaaacacccttccccttggctacccttccaagacgcatcgacgc 198

                                                                       
Query: 330 cttccttgaacgccactccaccaccaggcccgtagggttgggcagtctggaccttcttcg 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cttccttgaacgccactccaccaccaggcccgtagggttgggcagtctggaccttcttcg 138

                                                                       
Query: 390 ccttcttggccactatgaccaacgacggcctcnccgatggtcgcacgcctncaagcttgg 449
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 137 ccttcttggccactatgaccaacgacggcctcgccgatggtcgcacgcctccaagcttgg 78

                                            
Query: 450 atcgttgtaacananganaggaagatggtttca 482
           |||||||||||| | || |||||||||||||||
Sbjct: 77  atcgttgtaacagaggagaggaagatggtttca 45
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>emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMWG0681
          Length = 247

 Score =  373 bits (188), Expect = e-100
 Identities = 198/203 (97%)
 Strand = Plus / Minus

                                                                       
Query: 280 aaactggtaaacacccttccccttggctacccttccagacgcatcgacgccttccttgaa 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaactggtaaacacccttccccttggctacccttccagacgcatcgacgccttccttgaa 188

                                                                       
Query: 340 cgccactccaccaccaggcccgtagggttgggcagtctggaccttcttcgccttcttggc 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cgccactccaccaccaggcccgtagggttgggcagtctggaccttcttcgccttcttggc 128

                                                                       
Query: 400 cactatgaccaacgacggcctcnccgatggtcgcacgcctncaagcttggatcgttgtaa 459
           |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 127 cactatgaccaacgacggcctcgccgatggtcgcacgcctccaagcttggatcgttgtaa 68

                                  
Query: 460 cananganaggaagatggtttca 482
           || | || |||||||||||||||
Sbjct: 67  cagaggagaggaagatggtttca 45
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>ref|XM_476619.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 620

 Score =  242 bits (122), Expect = 9e-61
 Identities = 256/301 (85%)
 Strand = Plus / Minus

                                                                       
Query: 120 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 179
           |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||  |
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaagta 401

                                                                       
Query: 180 gccccgtctttcctccaacataaacgtcgccacttggagaccactcttntgttgtgtata 239
             || | ||||||||||||||| || || ||| ||| |||||| |||| ||  || ||||
Sbjct: 400 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 341

                                                                       
Query: 240 tagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcc 299
           | |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
Sbjct: 340 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 281

                                                                       
Query: 300 ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 359
           ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 280 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 221

                                                                       
Query: 360 cgtagggttgggcagtctggaccttcttcgccttcttggccactatgaccaacgacggcc 419
           | ||||| ||||  ||||| | |||||| || |||||||||||||||| ||| || ||||
Sbjct: 220 catagggctgggatgtctgaatcttctttgctttcttggccactatgatcaaagatggcc 161

            
Query: 420 t 420
           |
Sbjct: 160 t 160
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>dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C07, full
           insert sequence
          Length = 620

 Score =  242 bits (122), Expect = 9e-61
 Identities = 256/301 (85%)
 Strand = Plus / Minus

                                                                       
Query: 120 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 179
           |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||  |
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaagta 401

                                                                       
Query: 180 gccccgtctttcctccaacataaacgtcgccacttggagaccactcttntgttgtgtata 239
             || | ||||||||||||||| || || ||| ||| |||||| |||| ||  || ||||
Sbjct: 400 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 341

                                                                       
Query: 240 tagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcc 299
           | |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
Sbjct: 340 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 281

                                                                       
Query: 300 ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 359
           ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 280 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 221

                                                                       
Query: 360 cgtagggttgggcagtctggaccttcttcgccttcttggccactatgaccaacgacggcc 419
           | ||||| ||||  ||||| | |||||| || |||||||||||||||| ||| || ||||
Sbjct: 220 catagggctgggatgtctgaatcttctttgctttcttggccactatgatcaaagatggcc 161

            
Query: 420 t 420
           |
Sbjct: 160 t 160
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>dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L11, full
           insert sequence
          Length = 777

 Score =  234 bits (118), Expect = 2e-58
 Identities = 255/301 (84%)
 Strand = Plus / Minus

                                                                       
Query: 120 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 179
           |||||||||||| ||| ||||| |  ||| ||||||||||||| | |||||||||||  |
Sbjct: 461 tgtagacaagaatagcgccgccaactagacttccagcaagagtgattgcccagagaagta 402

                                                                       
Query: 180 gccccgtctttcctccaacataaacgtcgccacttggagaccactcttntgttgtgtata 239
             || | ||||||||||||||| || || ||| ||| |||||| |||| ||  || ||||
Sbjct: 401 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 342

                                                                       
Query: 240 tagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcc 299
           | |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
Sbjct: 341 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 282

                                                                       
Query: 300 ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 359
           ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 281 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 222

                                                                       
Query: 360 cgtagggttgggcagtctggaccttcttcgccttcttggccactatgaccaacgacggcc 419
           | ||||| ||||  ||||| | |||||| || |||||||||||||||| ||| || ||||
Sbjct: 221 catagggctgggatgtctgaatcttctttgctttcttggccactatgatcaaagatggcc 162

            
Query: 420 t 420
           |
Sbjct: 161 t 161
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>ref|XM_476620.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 405

 Score =  176 bits (89), Expect = 4e-41
 Identities = 175/204 (85%)
 Strand = Plus / Minus

                                                                       
Query: 101 gaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattccagcaaga 160
           ||||||||||| |||||| |||||||||||||||||||  ||||||||||||||| ||||
Sbjct: 401 gaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattccagaaaga 342

                                                                       
Query: 161 gtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgccacttggagac 220
           || ||||||||||| |||| ||| ||||||||||||  |||||| || |||||||| |||
Sbjct: 341 gtgactgcccagagcaacaaccctgtctttcctccagtataaacatcaccacttggtgac 282

                                                                       
Query: 221 cactcttntgttgtgtatatagggctgtacccatcaacatttgctccatacttgtcggca 280
           || || | ||   | ||||| |||||||| ||||||||||| ||||||||||||  ||||
Sbjct: 281 cattcctctgggttatatattgggctgtatccatcaacattagctccatacttgctggca 222

                                   
Query: 281 aactggtaaacacccttccccttg 304
           |||||||| || || |||||||||
Sbjct: 221 aactggtagacccctttccccttg 198
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  119 bits (60), Expect = 9e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                           
Query: 94      gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 153
               |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 2490122 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 2490063

                                                       
Query: 154     agcaagagtcactgcccagagaaacagccccgtctttcct 193
               || |||||| ||||||||||| |||| ||| |||||||||
Sbjct: 2490062 agaaagagtgactgcccagagcaacaaccctgtctttcct 2490023



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                         
Query: 245     ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 302
               ||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||
Sbjct: 2487136 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 2487079



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                           
Query: 300     ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 359
               ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 2486995 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 2486936

                
Query: 360     c 360
               |
Sbjct: 2486935 c 2486935



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                         
Query: 245     ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 302
               ||||| ||||||||||| ||||||||||||  |||||||||||| || || |||||||
Sbjct: 2489753 ctgtatccatcaacattagctccatacttgctggcaaactggtagacccctttcccct 2489696



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                        
Query: 120     tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 176
               |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 2487628 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 2487572
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>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score =  119 bits (60), Expect = 9e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                         
Query: 94    gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 153
             |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 55102 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 55043

                                                     
Query: 154   agcaagagtcactgcccagagaaacagccccgtctttcct 193
             || |||||| ||||||||||| |||| ||| |||||||||
Sbjct: 55042 agaaagagtgactgcccagagcaacaaccctgtctttcct 55003



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                       
Query: 245   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 302
             ||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||
Sbjct: 52116 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 52059



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                         
Query: 300   ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 359
             ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 51975 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 51916

              
Query: 360   c 360
             |
Sbjct: 51915 c 51915



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 245   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 302
             ||||| ||||||||||| ||||||||||||  |||||||||||| || || |||||||
Sbjct: 54733 ctgtatccatcaacattagctccatacttgctggcaaactggtagacccctttcccct 54676



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 120   tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 176
             |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 52608 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 52552
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>gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (PsbR) mRNA,
           complete cds
          Length = 698

 Score =  107 bits (54), Expect = 3e-20
 Identities = 152/185 (82%)
 Strand = Plus / Minus

                                                                       
Query: 119 ctgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaac 178
           ||||| |||||||||||||| ||   ||||| |||||||||||| | |||||||| ||  
Sbjct: 474 ctgtacacaagaagagcacctccacccagaagtccagcaagagtgattgcccagacaatg 415

                                                                       
Query: 179 agccccgtctttcctccaacataaacgtcgccacttggagaccactcttntgttgtgtat 238
           || || ||  |||||||||||||||| || ||||| |||||||| || | || || ||| 
Sbjct: 414 agaccagtggttcctccaacataaacatcaccactaggagaccattcgtctggtgagtag 355

                                                                       
Query: 239 atagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttc 298
           || |||||||| |||||||||||||| ||||| |||||  |||| ||||| |||||||| 
Sbjct: 354 atcgggctgtagccatcaacatttgcaccatatttgtccacaaattggtagacacccttt 295

                
Query: 299 ccctt 303
           |||||
Sbjct: 294 ccctt 290
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>emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10
          Length = 639

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                       
Query: 191 cctccaacataaacgtcgccacttggagaccactcttntgttgtgtatatagggctgtac 250
           ||||||||||| || || |||||||||||||| || | |||  |||| || |||||||| 
Sbjct: 342 cctccaacatagacatcaccacttggagaccagtcatctgtgttgtagatggggctgtat 283

                                                                
Query: 251 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccctt 303
           |||||||||||||||||||| |||||  | || |||||||||||||| |||||
Sbjct: 282 ccatcaacatttgctccatatttgtcaacgaattggtaaacaccctttccctt 230
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>gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA
          Length = 438

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                       
Query: 191 cctccaacataaacgtcgccacttggagaccactcttntgttgtgtatatagggctgtac 250
           ||||||||||| || || || ||||||||||| || | |||  |||| || |||||||| 
Sbjct: 197 cctccaacatagacatcaccgcttggagaccagtcatctgtgttgtagatggggctgtat 138

                                                                  
Query: 251 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 305
           |||||||||||||||||||| |||||  | || |||||||||||||| |||||||
Sbjct: 137 ccatcaacatttgctccatatttgtcaacgaattggtaaacaccctttcccttgg 83
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>gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA
          Length = 373

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                       
Query: 191 cctccaacataaacgtcgccacttggagaccactcttntgttgtgtatatagggctgtac 250
           ||||||||||| || || || |||| |||||| || | |||  |||| || |||||||| 
Sbjct: 133 cctccaacatanacatcaccgcttgnagaccagtcatctgtgttgtagatggggctgtat 74

                                                                  
Query: 251 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 305
           |||||||||||||||||||| |||||  | || |||||||||||||| |||||||
Sbjct: 73  ccatcaacatttgctccatatttgtcaacnaattggtaaacaccctttcccttgg 19
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>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1470_H06
          Length = 62794

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                       
Query: 245   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 302
             ||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||
Sbjct: 60883 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 60826



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                         
Query: 300   ccttggctacccttccagacgcatcgacgccttccttgaacgccactccaccaccaggcc 359
             ||||||||||||||||||| ||||| || |||||||||||| ||||||| ||| ||||||
Sbjct: 60742 ccttggctacccttccagatgcatcaacaccttccttgaacaccactcctccagcaggcc 60683

              
Query: 360   c 360
             |
Sbjct: 60682 c 60682



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 120   tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 176
             |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 61375 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 61319
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>emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-specific ST-LS1 gene
          Length = 560

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                       
Query: 191 cctccaacataaacgtcgccacttggagaccactcttntgttgtgtatatagggctgtac 250
           ||||||||||| || || ||||||||||||||||| | |||  |||| || || ||||| 
Sbjct: 323 cctccaacatagacatcaccacttggagaccactcatctgtgttgtagatgggactgtat 264

                                                                  
Query: 251 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 305
           ||||||||||| |||||||| |||||  || | ||||| |||||||| |||||||
Sbjct: 263 ccatcaacattagctccatatttgtcaacatattggtacacaccctttcccttgg 209
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>gb|AY348557.1| Trifolium pratense 10 kDa photosystem II polypeptide mRNA, complete
           cds
          Length = 584

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                       
Query: 239 atagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttc 298
           ||||| ||||| ||||||||||| || ||||| |||||  ||||||||||||||||||| 
Sbjct: 276 ataggactgtatccatcaacattagcaccatatttgtccacaaactggtaaacacccttt 217

                
Query: 299 ccctt 303
           |||||
Sbjct: 216 ccctt 212
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>emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD protein
          Length = 540

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                       
Query: 191 cctccaacataaacgtcgccacttggagaccactcttntgttgtgtatatagggctgtac 250
           ||||||||||| || || |||||||||||||| || |  ||  |||| || || ||||| 
Sbjct: 300 cctccaacatagacatcaccacttggagaccattcatccgtgttgtagatgggactgtat 241

                                                                  
Query: 251 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 305
           ||||||||||| |||||||| |||||  || | ||||| |||||||| |||||||
Sbjct: 240 ccatcaacattagctccatatttgtcaacatattggtacacaccctttcccttgg 186
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>gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypeptide of photosystem II,
           complete cds
          Length = 590

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 75/87 (86%), Gaps = 2/87 (2%)
 Strand = Plus / Minus

                                                                       
Query: 245 ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacaccctt-cccctt 303
           ||||| ||||||||||| || |||||||||||  |||| |||||||||||||| ||| ||
Sbjct: 292 ctgtaaccatcaacattggcaccatacttgtcaacaaattggtaaacacccttgcccgtt 233

                                      
Query: 304 ggctacccttccagacgcatcgacgcc 330
           ||||  ||||||||||| ||| |||||
Sbjct: 232 ggct-tccttccagacgaatcaacgcc 207
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>emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide precursor of photosystem II
          Length = 632

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 93/115 (80%)
 Strand = Plus / Minus

                                                                       
Query: 191 cctccaacataaacgtcgccacttggagaccactcttntgttgtgtatatagggctgtac 250
           ||||||||||| || || |||||||||||||| || |  ||  |||| || || ||||| 
Sbjct: 323 cctccaacatagacatcaccacttggagaccattcatccgtgttgtagatgggactgtat 264

                                                                  
Query: 251 ccatcaacatttgctccatacttgtcggcaaactggtaaacacccttccccttgg 305
           ||||||||||| || ||||| |||||  || | ||||| |||||||| |||||||
Sbjct: 263 ccatcaacattagccccatatttgtcaacatattggtacacaccctttcccttgg 209
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>dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT17N21, TM0403,
             complete sequence
          Length = 97807

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                       
Query: 245   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 302
             ||||| ||||||||||| || || ||||||||  || |||||||||||||||| ||||
Sbjct: 84239 ctgtatccatcaacattagcaccgtacttgtccacatactggtaaacaccctttccct 84296
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>dbj|AP006396.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT26P21, TM0279b,
             complete sequence
          Length = 28275

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 245   ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 302
             ||||| ||||||||||| || || ||||||||  || |||||||||||||||| ||||
Sbjct: 14725 ctgtatccatcaacattagcaccgtacttgtccacatactggtaaacaccctttccct 14668
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>emb|X04753.1|STLS1G Potato light-inducible tissue-specific ST-LS1 gene
          Length = 3699

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 191  cctccaacataaacgtcgccacttggagaccactc 225
            ||||||||||| || || |||||||||||||||||
Sbjct: 3042 cctccaacatagacatcaccacttggagaccactc 3008



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 245  ctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacacccttcccct 302
            ||||| ||||||||||| |||||||| |||||  || | ||||| |||||||| ||||
Sbjct: 2892 ctgtatccatcaacattagctccatatttgtcaacatattggtacacaccctttccct 2835
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>gb|AC153590.7| Mus musculus 6 BAC RP23-480O11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 181877

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 16     cattacatatgtcctgtctgtt 37
              ||||||||||||||||||||||
Sbjct: 118072 cattacatatgtcctgtctgtt 118093
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>dbj|AB090880.1| Aster tripolium mRNA for thiol protease, complete cds
          Length = 910

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 266 ccatacttgtcggcaaactggtaaacacccttcccctt 303
           |||||||||||  |||| ||||| ||||||||||||||
Sbjct: 355 ccatacttgtcaacaaattggtagacacccttcccctt 318
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>ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 mRNA, complete cds
          Length = 647

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 234 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 293
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 353 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 294

            
Query: 294 c 294
           |
Sbjct: 293 c 293
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 381     ccttcttcgccttcttggcca 401
               |||||||||||||||||||||
Sbjct: 2184158 ccttcttcgccttcttggcca 2184178
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 381     ccttcttcgccttcttggcca 401
               |||||||||||||||||||||
Sbjct: 2523514 ccttcttcgccttcttggcca 2523534
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>gb|AY096544.1| Arabidopsis thaliana putative photosystem II polypeptide
           (At1g79040) mRNA, complete cds
          Length = 454

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 234 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 293
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 286 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 227

            
Query: 294 c 294
           |
Sbjct: 226 c 226
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>gb|AY070103.1| Arabidopsis thaliana putative photosystem II polypeptide protein
           (At1g79040) mRNA, complete cds
          Length = 645

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 234 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 293
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 336 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 277

            
Query: 294 c 294
           |
Sbjct: 276 c 276
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>gb|AF035554.1|AF035554 Pisaster ochraceus protein kinase C-related kinase (PRK2) mRNA,
            partial cds
          Length = 2892

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 196  aacataaacgtcgccacttgg 216
            |||||||||||||||||||||
Sbjct: 1465 aacataaacgtcgccacttgg 1485
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>emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS85ZA04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 234 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 293
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 319 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 260

            
Query: 294 c 294
           |
Sbjct: 259 c 259
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>emb|BX813377.1|CNS0AC7S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB13ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 234 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 293
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 319 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 260

            
Query: 294 c 294
           |
Sbjct: 259 c 259
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>emb|BX813545.1|CNS0AC1I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB23ZD11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 576

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 234 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 293
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 315 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 256

            
Query: 294 c 294
           |
Sbjct: 255 c 255
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>emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS56ZH04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 234 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 293
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 319 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 260

            
Query: 294 c 294
           |
Sbjct: 259 c 259
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>emb|BX818517.1|CNS0AB2P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZE09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 579

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 234 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 293
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 318 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 259

            
Query: 294 c 294
           |
Sbjct: 258 c 258
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>emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL27ZF07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 588

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 234 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 293
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 321 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 262

            
Query: 294 c 294
           |
Sbjct: 261 c 261
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>gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete sequence
          Length = 611

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 234 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 293
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 353 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 294

            
Query: 294 c 294
           |
Sbjct: 293 c 293
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>emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 60S ribosomal protein L24 (RL24
            gene)
          Length = 1310

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 234  tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaactggtaaacac 293
            |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 1028 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 969

             
Query: 294  c 294
            |
Sbjct: 968  c 968
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>gb|L31936.1|BNABIF11G Brassica campestris ssp. pekinensis (clone bif11) photosystem II
           10kDa polypeptide mRNA, complete cds
          Length = 551

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 234 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcaaa 282
           |||| ||||| ||||| |||||||| || || |||||||||||| ||||
Sbjct: 301 tgtagataggactgtatccatcaacgttcgcaccatacttgtcgacaaa 253
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 252     catcaacatttgctccatac 271
               ||||||||||||||||||||
Sbjct: 1176164 catcaacatttgctccatac 1176145
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>gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, complete sequence
          Length = 197242

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 115  agtactgtagacaagaagag 134
            ||||||||||||||||||||
Sbjct: 4569 agtactgtagacaagaagag 4550
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>gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0064E13, complete sequence
          Length = 150158

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 325   gacgccttccttgaacgcca 344
             ||||||||||||||||||||
Sbjct: 82024 gacgccttccttgaacgcca 82005
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>gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, complete sequence
          Length = 153145

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   acacccttccccttggctac 309
             ||||||||||||||||||||
Sbjct: 35663 acacccttccccttggctac 35644
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>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038B22,
              complete sequence
          Length = 177557

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 325    gacgccttccttgaacgcca 344
              ||||||||||||||||||||
Sbjct: 117754 gacgccttccttgaacgcca 117735
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>gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome 18, complete sequence
          Length = 155887

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   ccagcagaattccagcaaga 160
             ||||||||||||||||||||
Sbjct: 25861 ccagcagaattccagcaaga 25880
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>gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosome 18, complete
            sequence
          Length = 215137

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 141  ccagcagaattccagcaaga 160
            ||||||||||||||||||||
Sbjct: 7108 ccagcagaattccagcaaga 7089
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>emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section 19 of 21): from 3608981 to
              3809670
          Length = 200690

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     ttggtttgctgcacataggc 95
              ||||||||||||||||||||
Sbjct: 125094 ttggtttgctgcacataggc 125075
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>emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O] genes
          Length = 14047

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 76   ttggtttgctgcacataggc 95
            ||||||||||||||||||||
Sbjct: 1312 ttggtttgctgcacataggc 1331
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>gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, complete sequence
          Length = 187624

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   taaacacccttccccttggc 306
             ||||||||||||||||||||
Sbjct: 65315 taaacacccttccccttggc 65296
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 320     gcatcgacgccttccttgaa 339
               ||||||||||||||||||||
Sbjct: 2504750 gcatcgacgccttccttgaa 2504769
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 325      gacgccttccttgaacgcca 344
                ||||||||||||||||||||
Sbjct: 20071089 gacgccttccttgaacgcca 20071070



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 325      gacgccttccttgaacgcca 344
                ||||||||||||||||||||
Sbjct: 19940687 gacgccttccttgaacgcca 19940668
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>dbj|AK119422.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-H02, full
           insert sequence
          Length = 3198

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 325 gacgccttccttgaacgcca 344
           ||||||||||||||||||||
Sbjct: 240 gacgccttccttgaacgcca 221
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>gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, complete sequence
          Length = 187014

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    agtactgtagacaagaagag 134
              ||||||||||||||||||||
Sbjct: 166431 agtactgtagacaagaagag 166412
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 325      gacgccttccttgaacgcca 344
                ||||||||||||||||||||
Sbjct: 20357765 gacgccttccttgaacgcca 20357746



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 325      gacgccttccttgaacgcca 344
                ||||||||||||||||||||
Sbjct: 20225666 gacgccttccttgaacgcca 20225647


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,068,230
Number of Sequences: 3902068
Number of extensions: 3068230
Number of successful extensions: 58692
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58469
Number of HSP's gapped (non-prelim): 214
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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