>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 27/105 (25%), Positives = 32/105 (30%), Gaps = 18/105 (17%)
 Frame = +2

Query: 98  QRHRSAHSPGC-----CSPPAGGVVAGTXLRSTIRDSSTTDWQSRH-VXTAKASRGSCQT 259
           Q H     PG      C    GG  + T   ST   S+TT   S     T+  S  S  T
Sbjct: 185 QGHSQTDFPGFYWNIDCDNNCGGTKSSTTTSSTSESSTTTSSTSESSTTTSSTSESSTTT 244

Query: 260 GHXXXXXXXXXXTA------------SPSPPGEGSCRRPSSTHRH 358
                       TA             P+PP   SC +   T  H
Sbjct: 245 SSTSESSTSSSTTAPATPTTTSCTKEKPTPPTTTSCTKEKPTPPH 289

>HGL2_ARATH (P46607) Homeobox protein GLABRA2 (Homeobox-leucine zipper protein|
           ATHB-10) (HD-ZIP protein ATHB-10)
          Length = 745

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 35  AAASYHRITSVRCSPGGDTRPQRHRSAHSPGCCSPPAGGVVAGT 166
           AA+SYH+ T +    G D R    ++ H PG    P G +V  +
Sbjct: 526 AASSYHQWTKITTKTGQDMRVSSRKNLHDPG---EPTGVIVCAS 566

>Y308_MYCPN (P75472) Hypothetical protein MPN308 (F10_orf565)|
          Length = 565

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 163 NXFALNDPRFIDDGLAEPPCPXSQGFEGLMSDRPPLVAYV 282
           N FAL  PRF++D LA+   P  +  +G ++   P+V  +
Sbjct: 332 NGFALWAPRFVEDLLAQGDLPFWKQVQGRLNPNKPVVGVI 371

>MAST1_RAT (Q810W7) Microtubule-associated serine/threonine-protein kinase 1 (EC|
            2.7.11.1) (Syntrophin-associated serine/threonine-protein
            kinase)
          Length = 1570

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -2

Query: 236  PWLXGHGGSANPSSMNLGSLSANXFPQQHHQLGDYSNLVSGL 111
            P +  HGGS   S M+  SLS+N   +      DYS  VSGL
Sbjct: 925  PAVDPHGGSPLASPMSPRSLSSNPSSRDSSPSRDYSPAVSGL 966

>MAST1_MOUSE (Q9R1L5) Microtubule-associated serine/threonine-protein kinase 1 (EC|
            2.7.11.1) (Syntrophin-associated serine/threonine-protein
            kinase)
          Length = 1566

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -2

Query: 236  PWLXGHGGSANPSSMNLGSLSANXFPQQHHQLGDYSNLVSGL 111
            P +  HGGS   S M+  SLS+N   +      DYS  VSGL
Sbjct: 924  PAVDPHGGSPLASPMSPRSLSSNPSSRDSSPSRDYSPAVSGL 965

>LCE1A_HUMAN (Q5T7P2) Late cornified envelope protein 1A (Late envelope protein|
           1)
          Length = 110

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 8/35 (22%)
 Frame = +2

Query: 71  CSPGGD----TRPQRHRS----AHSPGCCSPPAGG 151
           CS GG     +  +RHRS      S GCCS P+GG
Sbjct: 60  CSSGGGGCCLSHHRRHRSHRHRLQSSGCCSQPSGG 94

>CNC_DROME (P20482) Segmentation protein cap'n'collar|
          Length = 1383

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 266 GGLSDMSPSKPWLXGHGGSANPSSMNLGSLSANXFPQQHHQLGDYSN 126
           GG+SDMSP      G+   A+PS+       A   P QH Q G  +N
Sbjct: 700 GGVSDMSPYPHHYPGYSYQASPSN------GAPGTPGQHGQYGSGAN 740

>IER5_MOUSE (O89113) Immediate early response gene 5 protein|
          Length = 308

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 31/119 (26%), Positives = 38/119 (31%), Gaps = 28/119 (23%)
 Frame = +2

Query: 77  PGGDTRPQRHRSAHSPGCCS--PPAGGVVAGTXLRSTIRDSSTTDWQSRHVXTAKASRG- 247
           P    +PQR    H+PG  S  P A    +G  LR    DS+   W       A +S G 
Sbjct: 100 PQPQPQPQRPSVCHTPGAGSSEPVAAVAGSGEALRGGEEDSAAAAWGRVERPRAASSGGG 159

Query: 248 --SCQTGHXX---------XXXXXXXXTASPSPP--------------GEGSCRRPSST 349
             +C  G                      SP+PP              G  SC  P ST
Sbjct: 160 SDACPEGPRAVRRPCGCPPAVEERSSEDGSPAPPAPCPRKRGAAGVGGGRASCSAPGST 218

>CAS1_ARATH (P38605) Cycloartenol synthase (EC 5.4.99.8)|
           (2,3-epoxysqualene--cycloartenol cyclase)
          Length = 759

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
 Frame = -2

Query: 296 FSSLXTYAT--------NGGLSDMSPSKPWLXGHGGSANPSS 195
           F S+  Y T        N G  DM   + W+  HGG+ N +S
Sbjct: 175 FGSVLNYVTLRLLGEGPNDGDGDMEKGRDWILNHGGATNITS 216

>FUMC_CHLMU (Q9PL64) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)|
          Length = 463

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -2

Query: 332 DMSPLQGAREMQFSSLXTYATNGGLSDMSPSKPWLXGHGGSANPSSMNLGSLSANXFPQQ 153
           D+  L   R     +      +GGL +  P K W  G G  +N   MN+  + AN   ++
Sbjct: 58  DLQCLDAKRRDMIVAASDEILSGGLEEHFPLKVWQTGSGTQSN---MNVNEVIANLAIKR 114

Query: 152 H 150
           H
Sbjct: 115 H 115

>NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 precursor (Notch|
           1) [Contains: Notch 1 extracellular truncation; Notch 1
           intracellular domain]
          Length = 2531

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 27/100 (27%), Positives = 34/100 (34%), Gaps = 4/100 (4%)
 Frame = +2

Query: 71  CSPGGDTRPQRHRSAHSPGCCSPPAGGVVAGTXLRSTIRDSSTTDWQSRHVXTAKASRGS 250
           C+ GG   P    S++  GC  PP      G   R  + + S      RH  T     GS
Sbjct: 149 CANGGQCLP--FESSYICGC--PPG---FHGPTCRQDVNECSQNPGLCRHGGTCHNEIGS 201

Query: 251 ----CQTGHXXXXXXXXXXTASPSPPGEGSCRRPSSTHRH 358
               C+  H            SPSP   G   RP+    H
Sbjct: 202 YRCACRATHTGPHCELPYVPCSPSPCQNGGTCRPTGDTTH 241

>POXM_DROME (P23757) Paired box pox-meso protein (Paired box mesodermal|
           protein)
          Length = 402

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 23/75 (30%), Positives = 27/75 (36%), Gaps = 12/75 (16%)
 Frame = +2

Query: 125 GCCSPPAGGVVAGTX-----LRSTIRDSSTTDWQSRHVXT-------AKASRGSCQTGHX 268
           G  SPP G    G+      LRS    ++   W S H  +       A A R SCQ G  
Sbjct: 272 GSPSPPQGAGGQGSVPHPHQLRSVAAAAAAAHWPSSHSVSDILAHHQAVALRASCQVGVG 331

Query: 269 XXXXXXXXXTASPSP 313
                    T SP P
Sbjct: 332 VGGMGGMGSTVSPLP 346

>CHI1_RHIOL (P29026) Chitinase 1 precursor (EC 3.2.1.14)|
          Length = 540

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +2

Query: 83  GDTRPQRHRSAHSPGCCSPPAGGVVAGTXLRSTIRDSSTTDWQSRHVXTAKASRGSC 253
           GD   Q +   HS G   PP+   +  T   +T    +TT        TA ++ GSC
Sbjct: 301 GDFSSQLYSLVHSGGSTPPPSSSTIKTTTKATTTSTKTTT----TAAPTATSAPGSC 353

>BWR1B_HUMAN (Q8N1D0) Beckwith-Wiedemann syndrome chromosome region 1 candidate|
           protein B (p27-Beckwith-Wiedemann region 1 B)
           (p27-BWR1B) (Organic cation transporter-like protein
           2-antisense) (Solute carrier family 22 member 18
           antisense) (Solute carrier
          Length = 253

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 196 DDGLAEPPCPXSQGFEGLMSDRPPL 270
           D GL  PP P   GF  L    PPL
Sbjct: 215 DSGLPRPPNPALAGFRALAQHSPPL 239

>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC|
           1.3.1.33) (PCR B) (NADPH-protochlorophyllide
           oxidoreductase B) (POR B)
          Length = 395

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 191 NLGSLSANXFPQQHHQLGDYSNLVSGLNGVSAAA 90
           N  +L+ N  P+ +  LGD   L +GLNGV +AA
Sbjct: 226 NTNTLAGNVPPKAN--LGDLRGLAAGLNGVGSAA 257

>UBP12_SCHPO (O60079) Probable ubiquitin carboxyl-terminal hydrolase 12 (EC|
            3.1.2.15) (Ubiquitin thioesterase 12) (Ubiquitin-specific
            processing protease 12) (Deubiquitinating enzyme 12)
          Length = 979

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -2

Query: 197  SMNLGS--LSANXFPQQHHQLGDYSNLVSGLNGVSAAAYRRQANNGRW*C-DDMMLQPV 30
            SM  GS  LS    P+  ++L    N   GL G    A+ +  +NG++ C DD  + PV
Sbjct: 901  SMRTGSYKLSEKENPKLIYELYAVDNHYGGLGGGHYTAFAKNPDNGQFYCFDDSRVTPV 959

>GGA2_HUMAN (Q9UJY4) ADP-ribosylation factor-binding protein GGA2|
           (Golgi-localized, gamma ear-containing, ARF-binding
           protein 2) (Gamma-adaptin-related protein 2) (VHS domain
           and ear domain of gamma-adaptin) (Vear)
          Length = 613

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -1

Query: 252 HEPLEALAVXTWRLCQSVVDESRIVERKXVPATTPPAGGLQQPGEWAERCLCGRVSP 82
           H+ L AL +    +   V  ++   E++   ++T P GG+Q P   A+R L   +SP
Sbjct: 370 HQDLAALGISDAPVTGMVSGQNCCEEKRNPSSSTLPGGGVQNPS--ADRNLLDLLSP 424

>Y390_PASMU (Q9CNN7) Hypothetical adenine-specific methylase PM0390 (EC|
           2.1.1.72)
          Length = 338

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 380 FNSTDRYYGDGYSRAYD 330
           FN +D YYG GY+ A+D
Sbjct: 59  FNRSDIYYGHGYNNAWD 75

>COCA1_BOVIN (P25508) Collagen alpha-1(XII) chain (Fragments)|
          Length = 86

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = -1

Query: 162 PATTPPAGGLQQPGEWAERCLCGRVSPPGEQRT 64
           P    P G    PGE  ER L G   P GE RT
Sbjct: 30  PGMQGPQGERGLPGEXGERGLPGPPGPQGESRT 62

>COTX_BACSU (Q08313) Spore coat protein X|
          Length = 172

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 151 CCCGNXFALNDPRFIDDGLAE 213
           CC GN F  ND  FID  LA+
Sbjct: 38  CCNGNGFFGNDNAFIDQDLAQ 58

>TBX2_MOUSE (Q60707) T-box transcription factor TBX2 (T-box protein 2)|
          Length = 701

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 32  QAAASYHRITSVRCSPGGDTRPQRHRSAHSPGCCS--PPAGGVVAGTXLRS 178
           ++AA   R  S   SP   T P+R R   SP  CS  P  GG      LRS
Sbjct: 361 RSAAPLCRSPSRDASPARLTEPERSRERRSPERCSKEPTEGGGDGPFSLRS 411

>MAST1_HUMAN (Q9Y2H9) Microtubule-associated serine/threonine-protein kinase 1 (EC|
            2.7.11.1) (Syntrophin-associated serine/threonine-protein
            kinase)
          Length = 1570

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 236  PWLXGHGGSANPSSMNLGSLSANXFPQQHHQLGDYSNLVSGL 111
            P +  HG S   S M+  SLS+N   +      DYS  VSGL
Sbjct: 923  PAVDPHGSSPLASPMSPRSLSSNPSSRDSSPSRDYSPAVSGL 964

>TNFL7_MOUSE (O55237) Tumor necrosis factor ligand superfamily member 7 (CD27|
           ligand) (CD27-L) (CD70 antigen)
          Length = 195

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 53  RITSVRCSPGGDTRPQRHRSAHSPGCCSPPAGGV 154
           ++T   CS  G T   +HR+  + G CSP A G+
Sbjct: 111 QVTLANCSSPGSTL--QHRATLAVGICSPAAHGI 142

>SNF6_YEAST (P18888) Transcription regulatory protein SNF6 (SWI/SNF complex|
           component SNF6)
          Length = 332

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -2

Query: 218 GGSANPSSMNLGSLSANXFPQQHHQLGDYSNLVSGLNGVSAAAYRRQANNGRW*CDDMML 39
           GG  +  ++N    S   F ++++    YS   +G+NG S    ++Q N  R   + + L
Sbjct: 26  GGVGSMGAINNNIPSLTSFAEENNYQYGYSGSSAGMNGRSLTYAQQQLNKQRQDFERVRL 85

Query: 38  QP 33
           +P
Sbjct: 86  RP 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,619,550
Number of Sequences: 219361
Number of extensions: 1267842
Number of successful extensions: 3829
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3823
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)