Clone Name | rbasd23l21 |
---|---|
Clone Library Name | barley_pub |
>FMT_RAT (Q5I0C5) Methionyl-tRNA formyltransferase, mitochondrial precursor| (EC 2.1.2.9) (MtFMT) Length = 385 Score = 32.0 bits (71), Expect = 1.4 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Frame = -2 Query: 375 ETGFNLHQQEVTVILKLKSKHIGGVLSKNNKSVVYGVYSELPEWTEPGKGLP-ETSCFGL 199 + G L Q+ V V K SK + VLSK +++ V LPE G+ P E + Sbjct: 178 DVGPILKQETVAVPPKSTSKELEAVLSKLGANMLISVLKNLPESLNNGRPQPAEGVTYAP 237 Query: 198 STAQGLIEFKCESSTSKQ 145 + G K E TS+Q Sbjct: 238 KVSAGTSCVKWEEQTSEQ 255
>FMT_MOUSE (Q9D799) Methionyl-tRNA formyltransferase, mitochondrial precursor| (EC 2.1.2.9) (MtFMT) Length = 386 Score = 31.2 bits (69), Expect = 2.3 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Frame = -2 Query: 360 LHQQEVTVILKLKSKHIGGVLSKNNKSVVYGVYSELPEWTEPGKGLP-ETSCFGLSTAQG 184 L Q+ + V K SK + VLSK +++ V LPE G+ P E + + G Sbjct: 183 LQQETIPVPPKSTSKELEAVLSKLGANMLISVLKNLPESLNNGRPQPAEGVTYAPKVSAG 242 Query: 183 LIEFKCESSTSKQ 145 K E TS+Q Sbjct: 243 TSCVKWEEQTSEQ 255
>FMT_HUMAN (Q96DP5) Methionyl-tRNA formyltransferase, mitochondrial precursor| (EC 2.1.2.9) (MtFMT) Length = 389 Score = 30.4 bits (67), Expect = 4.0 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = -2 Query: 375 ETGFNLHQQEVTVILKLKSKHIGGVLSKNNKSVVYGVYSELPEWTEPGKGLP-ETSCFGL 199 + G L Q+ V V K +K + VLS+ +++ V LPE G+ P E + + Sbjct: 183 DVGPILKQETVPVPPKSTAKELEAVLSRLGANMLISVLKNLPESLSNGRQQPMEGATYAP 242 Query: 198 STAQGLIEFKCESSTSKQ 145 + G K E TS+Q Sbjct: 243 KISAGTSCIKWEEQTSEQ 260
>FUT2_ARATH (O81053) Probable fucosyltransferase 2 (EC 2.4.1.-) (AtFUT2)| Length = 539 Score = 30.0 bits (66), Expect = 5.2 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = -1 Query: 451 LCHGVLISGARKASC*NAQEKGIYTRDGFQSTSTRGHSHIEAEEQTHWRC 302 L G+L+SG +K SC + + +Y + S S + A E+ H RC Sbjct: 69 LLGGLLVSGFKKESCLSRYQSYLYRKASPYKPSLHLLSKLRAYEELHKRC 118
>ATG26_LEPMC (Q8NJS1) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)| (Autophagy-related protein 26) (UDP-glycosyltransferase 51) Length = 1456 Score = 30.0 bits (66), Expect = 5.2 Identities = 15/60 (25%), Positives = 32/60 (53%) Frame = -2 Query: 294 KNNKSVVYGVYSELPEWTEPGKGLPETSCFGLSTAQGLIEFKCESSTSKQSWVHGVQNLL 115 +N ++ Y + +E+ EP + E + F ++T + +FK +S S + WV +Q ++ Sbjct: 327 RNRINLQYAISAEV---LEPKRKGDEETSFVVTTDERTYQFKADSVASAREWVKSIQKVI 383
>UTP22_YEAST (P53254) Nucleolar protein UTP22| Length = 1237 Score = 29.6 bits (65), Expect = 6.8 Identities = 19/54 (35%), Positives = 27/54 (50%) Frame = -2 Query: 366 FNLHQQEVTVILKLKSKHIGGVLSKNNKSVVYGVYSELPEWTEPGKGLPETSCF 205 F L E+ +KLK KH+ V +K +Y + E+P+W E K L E F Sbjct: 103 FKLQIDELLEQVKLKQKHVLKVEKFLHK--LYDILQEIPDWEE--KSLAEVDSF 152
>SEC8_YEAST (P32855) Exocyst complex component SEC8| Length = 1065 Score = 29.3 bits (64), Expect = 8.9 Identities = 15/71 (21%), Positives = 36/71 (50%) Frame = -2 Query: 267 VYSELPEWTEPGKGLPETSCFGLSTAQGLIEFKCESSTSKQSWVHGVQNLLQQVDVADQV 88 ++ E+P + + GKGL ++ F T +++F S +W+ G++ + +V+ + Sbjct: 721 LFKEIPHFYQAGKGLSKSDLFNNLTLDTILQFSA-SVLWILNWLPGLKKAINIDEVSQEP 779 Query: 87 GHRLETLKLNW 55 + L+ +W Sbjct: 780 MLDADRLRSSW 790
>FMT_BOVIN (O77480) Methionyl-tRNA formyltransferase, mitochondrial precursor| (EC 2.1.2.9) (MtFMT) (Fragment) Length = 372 Score = 29.3 bits (64), Expect = 8.9 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 3/87 (3%) Frame = -2 Query: 396 KKRAFTQETGFNLHQQEVTVILKLKSKHIGGVLSKNNKSVVYGVYSELPEWTEPGKGLPE 217 K R F + G L Q+ V V K SK + VLS+ +++ V LPE G+ P Sbjct: 164 KPRRF--DVGPILKQETVPVPPKSTSKELEAVLSRLGANMLISVLKNLPESLNNGRQQPA 221 Query: 216 ---TSCFGLSTAQGLIEFKCESSTSKQ 145 T +S A I K E TS+Q Sbjct: 222 EGVTHAPKISAATSCI--KWEEQTSEQ 246
>Y329_PSEAE (Q9I6G2) Hypothetical UPF0339 protein PA0329| Length = 110 Score = 29.3 bits (64), Expect = 8.9 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Frame = -2 Query: 411 AAKTHKKRAFTQETGFNLHQQEVTVIL-----KLKSKHIGGVLSKNNKSVVYGVYSELP 250 AAK H K+A + FNLH +IL K K +GG+ S S G + P Sbjct: 2 AAKFHLKKAKDGQFHFNLHAANGEIILTSELYKAKDSALGGIESVRKNSQRDGAFEVKP 60 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,381,385 Number of Sequences: 219361 Number of extensions: 1413350 Number of successful extensions: 3359 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3292 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3359 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)