ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23l21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FMT_RAT (Q5I0C5) Methionyl-tRNA formyltransferase, mitochondrial... 32 1.4
2FMT_MOUSE (Q9D799) Methionyl-tRNA formyltransferase, mitochondri... 31 2.3
3FMT_HUMAN (Q96DP5) Methionyl-tRNA formyltransferase, mitochondri... 30 4.0
4FUT2_ARATH (O81053) Probable fucosyltransferase 2 (EC 2.4.1.-) (... 30 5.2
5ATG26_LEPMC (Q8NJS1) Sterol 3-beta-glucosyltransferase (EC 2.4.1... 30 5.2
6UTP22_YEAST (P53254) Nucleolar protein UTP22 30 6.8
7SEC8_YEAST (P32855) Exocyst complex component SEC8 29 8.9
8FMT_BOVIN (O77480) Methionyl-tRNA formyltransferase, mitochondri... 29 8.9
9Y329_PSEAE (Q9I6G2) Hypothetical UPF0339 protein PA0329 29 8.9

>FMT_RAT (Q5I0C5) Methionyl-tRNA formyltransferase, mitochondrial precursor|
           (EC 2.1.2.9) (MtFMT)
          Length = 385

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -2

Query: 375 ETGFNLHQQEVTVILKLKSKHIGGVLSKNNKSVVYGVYSELPEWTEPGKGLP-ETSCFGL 199
           + G  L Q+ V V  K  SK +  VLSK   +++  V   LPE    G+  P E   +  
Sbjct: 178 DVGPILKQETVAVPPKSTSKELEAVLSKLGANMLISVLKNLPESLNNGRPQPAEGVTYAP 237

Query: 198 STAQGLIEFKCESSTSKQ 145
             + G    K E  TS+Q
Sbjct: 238 KVSAGTSCVKWEEQTSEQ 255



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>FMT_MOUSE (Q9D799) Methionyl-tRNA formyltransferase, mitochondrial precursor|
           (EC 2.1.2.9) (MtFMT)
          Length = 386

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -2

Query: 360 LHQQEVTVILKLKSKHIGGVLSKNNKSVVYGVYSELPEWTEPGKGLP-ETSCFGLSTAQG 184
           L Q+ + V  K  SK +  VLSK   +++  V   LPE    G+  P E   +    + G
Sbjct: 183 LQQETIPVPPKSTSKELEAVLSKLGANMLISVLKNLPESLNNGRPQPAEGVTYAPKVSAG 242

Query: 183 LIEFKCESSTSKQ 145
               K E  TS+Q
Sbjct: 243 TSCVKWEEQTSEQ 255



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>FMT_HUMAN (Q96DP5) Methionyl-tRNA formyltransferase, mitochondrial precursor|
           (EC 2.1.2.9) (MtFMT)
          Length = 389

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = -2

Query: 375 ETGFNLHQQEVTVILKLKSKHIGGVLSKNNKSVVYGVYSELPEWTEPGKGLP-ETSCFGL 199
           + G  L Q+ V V  K  +K +  VLS+   +++  V   LPE    G+  P E + +  
Sbjct: 183 DVGPILKQETVPVPPKSTAKELEAVLSRLGANMLISVLKNLPESLSNGRQQPMEGATYAP 242

Query: 198 STAQGLIEFKCESSTSKQ 145
             + G    K E  TS+Q
Sbjct: 243 KISAGTSCIKWEEQTSEQ 260



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>FUT2_ARATH (O81053) Probable fucosyltransferase 2 (EC 2.4.1.-) (AtFUT2)|
          Length = 539

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 451 LCHGVLISGARKASC*NAQEKGIYTRDGFQSTSTRGHSHIEAEEQTHWRC 302
           L  G+L+SG +K SC +  +  +Y +      S    S + A E+ H RC
Sbjct: 69  LLGGLLVSGFKKESCLSRYQSYLYRKASPYKPSLHLLSKLRAYEELHKRC 118



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>ATG26_LEPMC (Q8NJS1) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
           (Autophagy-related protein 26) (UDP-glycosyltransferase
           51)
          Length = 1456

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = -2

Query: 294 KNNKSVVYGVYSELPEWTEPGKGLPETSCFGLSTAQGLIEFKCESSTSKQSWVHGVQNLL 115
           +N  ++ Y + +E+    EP +   E + F ++T +   +FK +S  S + WV  +Q ++
Sbjct: 327 RNRINLQYAISAEV---LEPKRKGDEETSFVVTTDERTYQFKADSVASAREWVKSIQKVI 383



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>UTP22_YEAST (P53254) Nucleolar protein UTP22|
          Length = 1237

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -2

Query: 366 FNLHQQEVTVILKLKSKHIGGVLSKNNKSVVYGVYSELPEWTEPGKGLPETSCF 205
           F L   E+   +KLK KH+  V    +K  +Y +  E+P+W E  K L E   F
Sbjct: 103 FKLQIDELLEQVKLKQKHVLKVEKFLHK--LYDILQEIPDWEE--KSLAEVDSF 152



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>SEC8_YEAST (P32855) Exocyst complex component SEC8|
          Length = 1065

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 15/71 (21%), Positives = 36/71 (50%)
 Frame = -2

Query: 267 VYSELPEWTEPGKGLPETSCFGLSTAQGLIEFKCESSTSKQSWVHGVQNLLQQVDVADQV 88
           ++ E+P + + GKGL ++  F   T   +++F   S     +W+ G++  +   +V+ + 
Sbjct: 721 LFKEIPHFYQAGKGLSKSDLFNNLTLDTILQFSA-SVLWILNWLPGLKKAINIDEVSQEP 779

Query: 87  GHRLETLKLNW 55
               + L+ +W
Sbjct: 780 MLDADRLRSSW 790



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>FMT_BOVIN (O77480) Methionyl-tRNA formyltransferase, mitochondrial precursor|
           (EC 2.1.2.9) (MtFMT) (Fragment)
          Length = 372

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = -2

Query: 396 KKRAFTQETGFNLHQQEVTVILKLKSKHIGGVLSKNNKSVVYGVYSELPEWTEPGKGLPE 217
           K R F  + G  L Q+ V V  K  SK +  VLS+   +++  V   LPE    G+  P 
Sbjct: 164 KPRRF--DVGPILKQETVPVPPKSTSKELEAVLSRLGANMLISVLKNLPESLNNGRQQPA 221

Query: 216 ---TSCFGLSTAQGLIEFKCESSTSKQ 145
              T    +S A   I  K E  TS+Q
Sbjct: 222 EGVTHAPKISAATSCI--KWEEQTSEQ 246



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>Y329_PSEAE (Q9I6G2) Hypothetical UPF0339 protein PA0329|
          Length = 110

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = -2

Query: 411 AAKTHKKRAFTQETGFNLHQQEVTVIL-----KLKSKHIGGVLSKNNKSVVYGVYSELP 250
           AAK H K+A   +  FNLH     +IL     K K   +GG+ S    S   G +   P
Sbjct: 2   AAKFHLKKAKDGQFHFNLHAANGEIILTSELYKAKDSALGGIESVRKNSQRDGAFEVKP 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,381,385
Number of Sequences: 219361
Number of extensions: 1413350
Number of successful extensions: 3359
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3359
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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