ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23l20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LFC_TACTR (P28175) Limulus clotting factor C precursor (EC 3.4.2... 28 4.6

>LFC_TACTR (P28175) Limulus clotting factor C precursor (EC 3.4.21.84) (FC)|
           [Contains: Limulus clotting factor C heavy chain;
           Limulus clotting factor C light chain; Limulus clotting
           factor C chain A; Limulus clotting factor C chain B]
          Length = 1019

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 159 RQCNRLGVTKHSCINIPSSCLIYSGLL*FSC*NP 260
           R+C ++   +H  +N PS  +I    L FSC +P
Sbjct: 197 RECAKVSSPEHGKVNAPSGNMIEGATLRFSCDSP 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,944,528
Number of Sequences: 219361
Number of extensions: 388415
Number of successful extensions: 714
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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