Clone Name | rbasd23l20 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_202943.1| Arabidopsis thaliana calmodulin binding AT4G33050 transcript variant AT4G33050.2 mRNA, complete cds Length = 1923 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctagtagtactaagtacaaa 139 |||||||||||||||||||| Sbjct: 1192 ctagtagtactaagtacaaa 1173
>ref|NM_119459.3| Arabidopsis thaliana calmodulin binding AT4G33050 transcript variant AT4G33050.1 mRNA, complete cds Length = 2008 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctagtagtactaagtacaaa 139 |||||||||||||||||||| Sbjct: 1192 ctagtagtactaagtacaaa 1173
>ref|NM_202944.2| Arabidopsis thaliana calmodulin binding AT4G33050 transcript variant AT4G33050.3 mRNA, complete cds Length = 1943 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctagtagtactaagtacaaa 139 |||||||||||||||||||| Sbjct: 1081 ctagtagtactaagtacaaa 1062
>gb|AC003953.1| Homo sapiens chromosome 9, P1 clone 8660 (LBNL H105), complete sequence Length = 75871 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 tgtcttctctagaaactgaa 71 |||||||||||||||||||| Sbjct: 13957 tgtcttctctagaaactgaa 13976
>gb|AC140268.2| Mus musculus BAC clone RP23-321K4 from chromosome 7, complete sequence Length = 193572 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 tgtcttctctagaaactgaa 71 |||||||||||||||||||| Sbjct: 87915 tgtcttctctagaaactgaa 87934
>emb|AL391475.7| Human DNA sequence from clone RP11-33G16 on chromosome 9 Contains a novel gene, complete sequence Length = 163058 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 tgtcttctctagaaactgaa 71 |||||||||||||||||||| Sbjct: 22247 tgtcttctctagaaactgaa 22266
>emb|AL161582.2|ATCHRIV78 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78 Length = 198669 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ctagtagtactaagtacaaa 139 |||||||||||||||||||| Sbjct: 167115 ctagtagtactaagtacaaa 167134
>emb|AL031804.1|ATF26P21 Arabidopsis thaliana DNA chromosome 4, BAC clone F26P21 (ESSA project) Length = 94482 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ctagtagtactaagtacaaa 139 |||||||||||||||||||| Sbjct: 76419 ctagtagtactaagtacaaa 76438
>emb|AL035525.1|ATF4I10 Arabidopsis thaliana DNA chromosome 4, BAC clone F4I10 (ESSA project) Length = 111876 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ctagtagtactaagtacaaa 139 |||||||||||||||||||| Sbjct: 19655 ctagtagtactaagtacaaa 19674
>gb|BT008453.1| Arabidopsis thaliana At4g33050 gene, complete cds Length = 1125 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctagtagtactaagtacaaa 139 |||||||||||||||||||| Sbjct: 1001 ctagtagtactaagtacaaa 982
>gb|AY062551.1| Arabidopsis thaliana putative protein (F26P21.170) mRNA, complete cds Length = 2000 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctagtagtactaagtacaaa 139 |||||||||||||||||||| Sbjct: 1192 ctagtagtactaagtacaaa 1173
>dbj|AK169984.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630006K20 product:hypothetical protein, full insert sequence Length = 4524 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 taaccaaacattcctgtatc 200 |||||||||||||||||||| Sbjct: 1812 taaccaaacattcctgtatc 1793
>emb|BX827070.1|CNS0A476 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB91ZD04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1767 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctagtagtactaagtacaaa 139 |||||||||||||||||||| Sbjct: 1037 ctagtagtactaagtacaaa 1018
>emb|BX827845.1|CNS0A3W7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH26ZH01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1963 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctagtagtactaagtacaaa 139 |||||||||||||||||||| Sbjct: 1053 ctagtagtactaagtacaaa 1034
>dbj|AB025617.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K7B16 Length = 26721 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tactctagttttcttgttag 254 |||||||||||||||||||| Sbjct: 4693 tactctagttttcttgttag 4712
>emb|AL772338.9| Mouse DNA sequence from clone RP23-47A6 on chromosome 4, complete sequence Length = 235366 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 taaccaaacattcctgtatc 200 |||||||||||||||||||| Sbjct: 148209 taaccaaacattcctgtatc 148190 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,625,948 Number of Sequences: 3902068 Number of extensions: 1625948 Number of successful extensions: 27275 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27259 Number of HSP's gapped (non-prelim): 16 length of query: 278 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 256 effective length of database: 17,147,199,772 effective search space: 4389683141632 effective search space used: 4389683141632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)