ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23l20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_202943.1| Arabidopsis thaliana calmodulin binding AT4G330... 40 3.6
2ref|NM_119459.3| Arabidopsis thaliana calmodulin binding AT4G330... 40 3.6
3ref|NM_202944.2| Arabidopsis thaliana calmodulin binding AT4G330... 40 3.6
4gb|AC003953.1| Homo sapiens chromosome 9, P1 clone 8660 (LBNL H1... 40 3.6
5gb|AC140268.2| Mus musculus BAC clone RP23-321K4 from chromosome... 40 3.6
6emb|AL391475.7| Human DNA sequence from clone RP11-33G16 on chro... 40 3.6
7emb|AL161582.2|ATCHRIV78 Arabidopsis thaliana DNA chromosome 4, ... 40 3.6
8emb|AL031804.1|ATF26P21 Arabidopsis thaliana DNA chromosome 4, B... 40 3.6
9emb|AL035525.1|ATF4I10 Arabidopsis thaliana DNA chromosome 4, BA... 40 3.6
10gb|BT008453.1| Arabidopsis thaliana At4g33050 gene, complete cds 40 3.6
11gb|AY062551.1| Arabidopsis thaliana putative protein (F26P21.170... 40 3.6
12dbj|AK169984.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 3.6
13emb|BX827070.1|CNS0A476 Arabidopsis thaliana Full-length cDNA Co... 40 3.6
14emb|BX827845.1|CNS0A3W7 Arabidopsis thaliana Full-length cDNA Co... 40 3.6
15dbj|AB025617.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 3.6
16emb|AL772338.9| Mouse DNA sequence from clone RP23-47A6 on chrom... 40 3.6

>ref|NM_202943.1| Arabidopsis thaliana calmodulin binding AT4G33050 transcript variant
            AT4G33050.2 mRNA, complete cds
          Length = 1923

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  ctagtagtactaagtacaaa 139
            ||||||||||||||||||||
Sbjct: 1192 ctagtagtactaagtacaaa 1173



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>ref|NM_119459.3| Arabidopsis thaliana calmodulin binding AT4G33050 transcript variant
            AT4G33050.1 mRNA, complete cds
          Length = 2008

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  ctagtagtactaagtacaaa 139
            ||||||||||||||||||||
Sbjct: 1192 ctagtagtactaagtacaaa 1173



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>ref|NM_202944.2| Arabidopsis thaliana calmodulin binding AT4G33050 transcript variant
            AT4G33050.3 mRNA, complete cds
          Length = 1943

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  ctagtagtactaagtacaaa 139
            ||||||||||||||||||||
Sbjct: 1081 ctagtagtactaagtacaaa 1062



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>gb|AC003953.1| Homo sapiens chromosome 9, P1 clone 8660 (LBNL H105), complete sequence
          Length = 75871

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    tgtcttctctagaaactgaa 71
             ||||||||||||||||||||
Sbjct: 13957 tgtcttctctagaaactgaa 13976



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>gb|AC140268.2| Mus musculus BAC clone RP23-321K4 from chromosome 7, complete sequence
          Length = 193572

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    tgtcttctctagaaactgaa 71
             ||||||||||||||||||||
Sbjct: 87915 tgtcttctctagaaactgaa 87934



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>emb|AL391475.7| Human DNA sequence from clone RP11-33G16 on chromosome 9 Contains a
             novel gene, complete sequence
          Length = 163058

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    tgtcttctctagaaactgaa 71
             ||||||||||||||||||||
Sbjct: 22247 tgtcttctctagaaactgaa 22266



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>emb|AL161582.2|ATCHRIV78 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78
          Length = 198669

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    ctagtagtactaagtacaaa 139
              ||||||||||||||||||||
Sbjct: 167115 ctagtagtactaagtacaaa 167134



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>emb|AL031804.1|ATF26P21 Arabidopsis thaliana DNA chromosome 4, BAC clone F26P21 (ESSA project)
          Length = 94482

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   ctagtagtactaagtacaaa 139
             ||||||||||||||||||||
Sbjct: 76419 ctagtagtactaagtacaaa 76438



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>emb|AL035525.1|ATF4I10 Arabidopsis thaliana DNA chromosome 4, BAC clone F4I10 (ESSA project)
          Length = 111876

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   ctagtagtactaagtacaaa 139
             ||||||||||||||||||||
Sbjct: 19655 ctagtagtactaagtacaaa 19674



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>gb|BT008453.1| Arabidopsis thaliana At4g33050 gene, complete cds
          Length = 1125

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  ctagtagtactaagtacaaa 139
            ||||||||||||||||||||
Sbjct: 1001 ctagtagtactaagtacaaa 982



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>gb|AY062551.1| Arabidopsis thaliana putative protein (F26P21.170) mRNA, complete cds
          Length = 2000

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  ctagtagtactaagtacaaa 139
            ||||||||||||||||||||
Sbjct: 1192 ctagtagtactaagtacaaa 1173



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>dbj|AK169984.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630006K20
            product:hypothetical protein, full insert sequence
          Length = 4524

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  taaccaaacattcctgtatc 200
            ||||||||||||||||||||
Sbjct: 1812 taaccaaacattcctgtatc 1793



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>emb|BX827070.1|CNS0A476 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB91ZD04 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1767

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  ctagtagtactaagtacaaa 139
            ||||||||||||||||||||
Sbjct: 1037 ctagtagtactaagtacaaa 1018



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>emb|BX827845.1|CNS0A3W7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH26ZH01 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1963

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  ctagtagtactaagtacaaa 139
            ||||||||||||||||||||
Sbjct: 1053 ctagtagtactaagtacaaa 1034



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>dbj|AB025617.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K7B16
          Length = 26721

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  tactctagttttcttgttag 254
            ||||||||||||||||||||
Sbjct: 4693 tactctagttttcttgttag 4712



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>emb|AL772338.9| Mouse DNA sequence from clone RP23-47A6 on chromosome 4, complete
              sequence
          Length = 235366

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    taaccaaacattcctgtatc 200
              ||||||||||||||||||||
Sbjct: 148209 taaccaaacattcctgtatc 148190


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,625,948
Number of Sequences: 3902068
Number of extensions: 1625948
Number of successful extensions: 27275
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27259
Number of HSP's gapped (non-prelim): 16
length of query: 278
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 256
effective length of database: 17,147,199,772
effective search space: 4389683141632
effective search space used: 4389683141632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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