ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23l16 |
|---|---|
| Clone Library Name | barley_pub |
>ABCB7_MOUSE (Q61102) ATP-binding cassette sub-family B member 7, mitochondrial| (ATP-binding cassette transporter 7) (ABC transporter 7 protein) (Fragment) Length = 694 Score = 48.9 bits (115), Expect(2) = 7e-13 Identities = 20/40 (50%), Positives = 32/40 (80%) Frame = -2 Query: 164 RQTGALNRIIDRGSNAINFILTVTVFNIVPTILEVLIVIS 45 RQTGAL++ IDRG+ I+F+L+ VFN++P + E+++V S Sbjct: 186 RQTGALSKAIDRGTRGISFVLSALVFNLLPIVFEMMLVSS 225 Score = 44.3 bits (103), Expect(2) = 7e-13 Identities = 22/65 (33%), Positives = 40/65 (61%) Frame = -1 Query: 363 EALGGAEASLASFTDANATLLALFASPGAVLIGYGIARSGVSACTELRNALFSKVTLRAI 184 ++L ++ + +DA T+ + AVLIGYG++R+G + E+RNA+F KV +I Sbjct: 108 DSLNQMSGNMLNLSDAPNTVATMAT---AVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSI 164 Query: 183 RSVSR 169 R +++ Sbjct: 165 RRIAK 169
>ABCB7_HUMAN (O75027) ATP-binding cassette sub-family B member 7, mitochondrial| precursor (ATP-binding cassette transporter 7) (ABC transporter 7 protein) Length = 752 Score = 48.5 bits (114), Expect(2) = 1e-12 Identities = 20/38 (52%), Positives = 31/38 (81%) Frame = -2 Query: 164 RQTGALNRIIDRGSNAINFILTVTVFNIVPTILEVLIV 51 RQTGAL++ IDRG+ I+F+L+ VFN++P + EV++V Sbjct: 244 RQTGALSKAIDRGTRGISFVLSALVFNLLPIMFEVMLV 281 Score = 44.3 bits (103), Expect(2) = 1e-12 Identities = 22/65 (33%), Positives = 40/65 (61%) Frame = -1 Query: 363 EALGGAEASLASFTDANATLLALFASPGAVLIGYGIARSGVSACTELRNALFSKVTLRAI 184 ++L ++ + +DA T+ + AVLIGYG++R+G + E+RNA+F KV +I Sbjct: 166 DSLNQMSGNMLNLSDAPNTVATMAT---AVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSI 222 Query: 183 RSVSR 169 R +++ Sbjct: 223 RRIAK 227
>ABCB7_RAT (Q704E8) ATP-binding cassette sub-family B member 7, mitochondrial| precursor (ATP-binding cassette transporter 7) (ABC transporter 7 protein) Length = 752 Score = 47.8 bits (112), Expect(2) = 2e-12 Identities = 20/40 (50%), Positives = 31/40 (77%) Frame = -2 Query: 164 RQTGALNRIIDRGSNAINFILTVTVFNIVPTILEVLIVIS 45 RQTGAL++ IDRG+ I+F+L+ VFN++P + E+ +V S Sbjct: 244 RQTGALSKAIDRGTRGISFVLSALVFNLLPIVFEMTLVSS 283 Score = 44.3 bits (103), Expect(2) = 2e-12 Identities = 22/65 (33%), Positives = 40/65 (61%) Frame = -1 Query: 363 EALGGAEASLASFTDANATLLALFASPGAVLIGYGIARSGVSACTELRNALFSKVTLRAI 184 ++L ++ + +DA T+ + AVLIGYG++R+G + E+RNA+F KV +I Sbjct: 166 DSLNQMSGNMLNLSDAPNTVATMAT---AVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSI 222 Query: 183 RSVSR 169 R +++ Sbjct: 223 RRIAK 227
>YD01_SCHPO (O14286) Putative ABC transporter C15A10.01 in chromosome I| Length = 693 Score = 42.7 bits (99), Expect(2) = 5e-10 Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 4/52 (7%) Frame = -1 Query: 315 NATLL----ALFASPGAVLIGYGIARSGVSACTELRNALFSKVTLRAIRSVS 172 N TL+ AL+++ GAV++GYG AR + ELRN++F+ V+ AIRSVS Sbjct: 148 NTTLVQEVGALWSTVGAVVLGYGFARIFSTVFQELRNSVFAIVSQSAIRSVS 199 Score = 40.8 bits (94), Expect(2) = 5e-10 Identities = 17/38 (44%), Positives = 28/38 (73%) Frame = -2 Query: 164 RQTGALNRIIDRGSNAINFILTVTVFNIVPTILEVLIV 51 +QTG++ R +DRG+ I+FIL+ V +I+P LE+ +V Sbjct: 217 KQTGSITRAMDRGTKGISFILSSMVLHIIPITLEIAMV 254
>ATM1_YEAST (P40416) Transporter ATM1, mitochondrial precursor| Length = 690 Score = 41.6 bits (96), Expect(2) = 1e-09 Identities = 18/38 (47%), Positives = 26/38 (68%) Frame = -2 Query: 164 RQTGALNRIIDRGSNAINFILTVTVFNIVPTILEVLIV 51 RQTG L R +DRG+ I+ +LT VF+I+P E+ +V Sbjct: 209 RQTGGLTRAMDRGTKGISQVLTAMVFHIIPISFEISVV 246 Score = 40.8 bits (94), Expect(2) = 1e-09 Identities = 22/44 (50%), Positives = 30/44 (68%) Frame = -1 Query: 303 LALFASPGAVLIGYGIARSGVSACTELRNALFSKVTLRAIRSVS 172 +AL A+ G ++ YG+AR G ELRNA+F+KV AIR+VS Sbjct: 148 VALPAAIGLTILCYGVARFGSVLFGELRNAVFAKVAQNAIRTVS 191
>ABCB6_HUMAN (Q9NP58) ATP-binding cassette sub-family B member 6, mitochondrial| precursor (Mitochondrial ABC transporter 3) (Mt-ABC transporter 3) (ABC transporter umat) Length = 842 Score = 40.8 bits (94), Expect = 0.004 Identities = 16/39 (41%), Positives = 30/39 (76%) Frame = -2 Query: 164 RQTGALNRIIDRGSNAINFILTVTVFNIVPTILEVLIVI 48 R+TG + RI DRG++++ +L+ VFN++PT+ +++I I Sbjct: 364 RRTGEVLRIADRGTSSVTGLLSYLVFNVIPTLADIIIGI 402
>YAV2_XANCV (P14728) Hypothetical 82 kDa avirulence protein in avrBs3 region| Length = 784 Score = 33.1 bits (74), Expect = 0.80 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -2 Query: 680 LAPCQVAMAKL*CGMAPWQWYSIPKPRC 597 L P +AMA CG+ PW W+S RC Sbjct: 624 LPPLLLAMATTCCGVRPWAWHSTGNSRC 651 Score = 32.3 bits (72), Expect = 1.4 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -2 Query: 680 LAPCQVAMAKL*CGMAPWQWYSIPKPRC 597 L P +AMA CG+ PW W+S RC Sbjct: 658 LPPPLLAMATTCCGVRPWAWHSTGNSRC 685 Score = 32.3 bits (72), Expect = 1.4 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -2 Query: 680 LAPCQVAMAKL*CGMAPWQWYSIPKPRC 597 L P +AMA CG+ PW W+S RC Sbjct: 386 LPPPLLAMATTCCGVRPWAWHSTGNSRC 413 Score = 32.3 bits (72), Expect = 1.4 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -2 Query: 680 LAPCQVAMAKL*CGMAPWQWYSIPKPRC 597 L P +AMA CG+ PW W+S RC Sbjct: 182 LPPPLLAMATTCCGVRPWAWHSTGNSRC 209 Score = 32.3 bits (72), Expect = 1.4 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -2 Query: 680 LAPCQVAMAKL*CGMAPWQWYSIPKPRC 597 L P +AMA CG+ PW W+S RC Sbjct: 114 LPPPLLAMATTCCGVRPWAWHSTGNSRC 141
>CLPB_BACNO (P17422) Chaperone clpB| Length = 860 Score = 30.0 bits (66), Expect = 6.8 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -1 Query: 612 PKAKMQEGPLNISSESECLLHFCQCYRWENG 520 P+ K G +NIS ES LL+ C Y +NG Sbjct: 76 PRVKNPTGDVNISPESMRLLNLCDKYAQQNG 106
>GLYA1_MYCTU (O53441) Serine hydroxymethyltransferase 1 (EC 2.1.2.1) (Serine| methylase 1) (SHMT 1) Length = 426 Score = 29.6 bits (65), Expect = 8.9 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Frame = -1 Query: 405 QHQDCVVIGSLSRREALGGAEASLA---SFTDANATLLALFASPGAVLIGYGIARSG 244 +H D V + R +AL GAE + S ANA +L SPG L+G +A G Sbjct: 66 EHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANGG 122
>GLYA1_MYCBO (P59953) Serine hydroxymethyltransferase 1 (EC 2.1.2.1) (Serine| methylase 1) (SHMT 1) Length = 426 Score = 29.6 bits (65), Expect = 8.9 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Frame = -1 Query: 405 QHQDCVVIGSLSRREALGGAEASLA---SFTDANATLLALFASPGAVLIGYGIARSG 244 +H D V + R +AL GAE + S ANA +L SPG L+G +A G Sbjct: 66 EHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANGG 122
>GLYA_STRCO (O86565) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 420 Score = 29.6 bits (65), Expect = 8.9 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Frame = -1 Query: 405 QHQDCVVIGSLSRREALGGAE-ASLASFTDANATLLALFA--SPGAVLIGYGIARSG 244 +H D V ++ R +AL GAE A++ + A A A+FA PG ++G +A G Sbjct: 69 EHVDVVEQIAIDRVKALFGAEHANVQPHSGAQANAAAMFALLKPGDTIMGLNLAHGG 125 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,897,392 Number of Sequences: 219361 Number of extensions: 1715334 Number of successful extensions: 4797 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4611 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4797 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
