ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23l16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple... 396 e-107
2dbj|AK072699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 2e-47
3dbj|AK064342.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 2e-47
4ref|NM_185480.1| Oryza sativa (japonica cultivar-group), Ozsa857... 196 7e-47
5gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, c... 178 2e-41
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
7dbj|AP000391.2| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
8gb|AC016542.11| Homo sapiens chromosome 10 clone RP11-354E23, co... 44 0.60
9gb|AC121917.2| Mus musculus BAC clone RP24-194F23 from 5, comple... 42 2.4
10emb|AL645766.5| Mouse DNA sequence from clone RP23-41B10 on chro... 42 2.4
11gb|AC133065.3| Homo sapiens chromosome 16 clone RP11-876N24, com... 42 2.4
12emb|BX001038.6| Zebrafish DNA sequence from clone CH211-12M10 in... 42 2.4
13emb|AL591032.19| Mouse DNA sequence from clone RP22-211A10 on ch... 42 2.4
14emb|AL607123.22| Mouse DNA sequence from clone RP23-391E6 on chr... 42 2.4
15gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 40 9.3
16gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 40 9.3
17gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 40 9.3
18ref|XM_669449.1| Plasmodium berghei strain ANKA Pb-fam-1 protein... 40 9.3
19ref|XM_674075.1| Plasmodium berghei strain ANKA Pb-fam-1 protein... 40 9.3
20gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, com... 40 9.3
21gb|CP000001.1| Bacillus cereus E33L, complete genome 40 9.3
22emb|AL161550.2|ATCHRIV50 Arabidopsis thaliana DNA chromosome 4, ... 40 9.3
23emb|AL022580.1|ATT5K18 Arabidopsis thaliana DNA chromosome 4, BA... 40 9.3
24emb|CR626922.13| Zebrafish DNA sequence from clone DKEY-33K14 in... 40 9.3
25gb|AC158240.5| Pan troglodytes BAC clone CH251-542M19 from chrom... 40 9.3
26gb|AC104302.2| Homo sapiens chromosome 3 clone RP11-379L20, comp... 40 9.3
27dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
28gb|AC157956.2| Pan troglodytes BAC clone CH251-379N13 from chrom... 40 9.3
29gb|AC009955.4|AC009955 Homo sapiens BAC clone RP11-256I23 from 2... 40 9.3
30dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
31gb|AC113417.2| Homo sapiens chromosome 5 clone RP11-569B5, compl... 40 9.3
32emb|Y16834.1|CAHGT1 Candida albicans HGT1 gene 40 9.3
33gb|AF095080.1|AF095080 HIV-1 strain Ak/BM-15 country USA envelop... 40 9.3
34gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 40 9.3 
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score =  396 bits (200), Expect = e-107
 Identities = 209/212 (98%)
 Strand = Plus / Minus

                                                                         
Query: 360   cttcgcgccgactaagagacccaataacaacacaatcctgatgttgaaatcacggctatt 419
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50748 cttcgcgccgactaagatacccaataacaacacaatcctgatgttgaaatcacggctatt 50689

                                                                         
Query: 420   gttcatccttaagtacttccaaaggtttcgaaggatctgaatatctgctatctgatcatc 479
             |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 50688 gttcatccttaagtacttccaaaggttttgaaggatctgaatatctgctatctgatcatc 50629

                                                                         
Query: 480   gatgtccttctttggggcatctttatgcacgttgtcatcagccgttttcccagcggtagc 539
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 50628 gatgtccttctttggggcatcttcatgcacgttgtcatcagccgttttcccagcggtagc 50569

                                             
Query: 540   attggcagaagtggagaaggcattcgctctct 571
             ||||||||||||||||||||||||||||||||
Sbjct: 50568 attggcagaagtggagaaggcattcgctctct 50537



 Score =  222 bits (112), Expect = 1e-54
 Identities = 112/112 (100%)
 Strand = Plus / Minus

                                                                         
Query: 570   ctgacgaaatattgagtggtccttcttgcatcttggctttgggatggagtaccactgcca 629
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49172 ctgacgaaatattgagtggtccttcttgcatcttggctttgggatggagtaccactgcca 49113

                                                                 
Query: 630   tggcgccatcccacatcacagcttcgccatggcaacttggcaaggagccagc 681
             ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49112 tggcgccatcccacatcacagcttcgccatggcaacttggcaaggagccagc 49061



 Score =  184 bits (93), Expect = 3e-43
 Identities = 99/101 (98%)
 Strand = Plus / Minus

                                                                         
Query: 261   catatccaatcagaactgctcctgggcttgcaaagagagccaacagggttgcattagcat 320
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51565 catatcctatcagaactgctcctgggcttgcaaagagagccaacagggttgcattagcat 51506

                                                      
Query: 321   ctgtaaatgatgctagtgaggcttcagcgccaccaagtgct 361
             |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 51505 ctgtaaatgatgctagtgaggcttcagcgccaccaaatgct 51465
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>dbj|AK072699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139I17, full
           insert sequence
          Length = 2728

 Score =  198 bits (100), Expect = 2e-47
 Identities = 166/188 (88%)
 Strand = Plus / Minus

                                                                       
Query: 170 ctggagactgaacggatggctctcaaggtaactttcgaaaataaagcattccgcagttct 229
           |||||||||||||||||||||||||| || ||||| ||||| | |||||| |||||||||
Sbjct: 978 ctggagactgaacggatggctctcaatgtcactttagaaaagacagcatttcgcagttct 919

                                                                       
Query: 230 gtacaagctgatactcctgaccgcgcaataccatatccaatcagaactgctcctgggctt 289
           ||||| ||||||||||| || || ||||| ||||||||||||||||| ||| ||||||||
Sbjct: 918 gtacaggctgatactcccgatcgtgcaattccatatccaatcagaacagctgctgggctt 859

                                                                       
Query: 290 gcaaagagagccaacagggttgcattagcatctgtaaatgatgctagtgaggcttcagcg 349
           |||||||||||||| ||||| |||||||| ||||| |||||||| ||||| | |||||| 
Sbjct: 858 gcaaagagagccaatagggtagcattagcctctgtgaatgatgcaagtgaagtttcagca 799

                   
Query: 350 ccaccaag 357
           ||| ||||
Sbjct: 798 ccagcaag 791



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 84/98 (85%)
 Strand = Plus / Minus

                                                                        
Query: 69   tattgtgggaacaatattgaacactgtcactgtaagaatgaaatttattgcattgctgcc 128
            |||||||||||||| |||||||||  |||||||||| ||| ||||||| |||   || ||
Sbjct: 1123 tattgtgggaacaacattgaacaccatcactgtaaggatgtaatttatcgcacgactacc 1064

                                                  
Query: 129  tctgtcaattatgcgatttagagctccagtttgccggc 166
            ||  ||||||||||||||||| || |||||||||||||
Sbjct: 1063 tcgatcaattatgcgatttagggcaccagtttgccggc 1026
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>dbj|AK064342.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-H07, full
           insert sequence
          Length = 2522

 Score =  198 bits (100), Expect = 2e-47
 Identities = 166/188 (88%)
 Strand = Plus / Minus

                                                                       
Query: 170 ctggagactgaacggatggctctcaaggtaactttcgaaaataaagcattccgcagttct 229
           |||||||||||||||||||||||||| || ||||| ||||| | |||||| |||||||||
Sbjct: 773 ctggagactgaacggatggctctcaatgtcactttagaaaagacagcatttcgcagttct 714

                                                                       
Query: 230 gtacaagctgatactcctgaccgcgcaataccatatccaatcagaactgctcctgggctt 289
           ||||| ||||||||||| || || ||||| ||||||||||||||||| ||| ||||||||
Sbjct: 713 gtacaggctgatactcccgatcgtgcaattccatatccaatcagaacagctgctgggctt 654

                                                                       
Query: 290 gcaaagagagccaacagggttgcattagcatctgtaaatgatgctagtgaggcttcagcg 349
           |||||||||||||| ||||| |||||||| ||||| |||||||| ||||| | |||||| 
Sbjct: 653 gcaaagagagccaatagggtagcattagcctctgtgaatgatgcaagtgaagtttcagca 594

                   
Query: 350 ccaccaag 357
           ||| ||||
Sbjct: 593 ccagcaag 586



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 84/98 (85%)
 Strand = Plus / Minus

                                                                       
Query: 69  tattgtgggaacaatattgaacactgtcactgtaagaatgaaatttattgcattgctgcc 128
           |||||||||||||| |||||||||  |||||||||| ||| ||||||| |||   || ||
Sbjct: 918 tattgtgggaacaacattgaacaccatcactgtaaggatgtaatttatcgcacgactacc 859

                                                 
Query: 129 tctgtcaattatgcgatttagagctccagtttgccggc 166
           ||  ||||||||||||||||| || |||||||||||||
Sbjct: 858 tcgatcaattatgcgatttagggcaccagtttgccggc 821
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>ref|NM_185480.1| Oryza sativa (japonica cultivar-group), Ozsa8577 predicted mRNA
          Length = 2811

 Score =  196 bits (99), Expect = 7e-47
 Identities = 165/187 (88%)
 Strand = Plus / Minus

                                                                       
Query: 171 tggagactgaacggatggctctcaaggtaactttcgaaaataaagcattccgcagttctg 230
           ||||||||||||||||||||||||| || ||||| ||||| | |||||| ||||||||||
Sbjct: 715 tggagactgaacggatggctctcaatgtcactttagaaaagacagcatttcgcagttctg 656

                                                                       
Query: 231 tacaagctgatactcctgaccgcgcaataccatatccaatcagaactgctcctgggcttg 290
           |||| ||||||||||| || || ||||| ||||||||||||||||| ||| |||||||||
Sbjct: 655 tacaggctgatactcccgatcgtgcaattccatatccaatcagaacagctgctgggcttg 596

                                                                       
Query: 291 caaagagagccaacagggttgcattagcatctgtaaatgatgctagtgaggcttcagcgc 350
           ||||||||||||| ||||| |||||||| ||||| |||||||| ||||| | |||||| |
Sbjct: 595 caaagagagccaatagggtagcattagcctctgtgaatgatgcaagtgaagtttcagcac 536

                  
Query: 351 caccaag 357
           || ||||
Sbjct: 535 cagcaag 529



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 84/98 (85%)
 Strand = Plus / Minus

                                                                        
Query: 69   tattgtgggaacaatattgaacactgtcactgtaagaatgaaatttattgcattgctgcc 128
            |||||||||||||| |||||||||  |||||||||| ||| ||||||| |||   || ||
Sbjct: 1470 tattgtgggaacaacattgaacaccatcactgtaaggatgtaatttatcgcacgactacc 1411

                                                  
Query: 129  tctgtcaattatgcgatttagagctccagtttgccggc 166
            ||  ||||||||||||||||| || |||||||||||||
Sbjct: 1410 tcgatcaattatgcgatttagggcaccagtttgccggc 1373
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>gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, complete sequence
          Length = 111912

 Score =  178 bits (90), Expect = 2e-41
 Identities = 120/130 (92%)
 Strand = Plus / Minus

                                                                         
Query: 228   ctgtacaagctgatactcctgaccgcgcaataccatatccaatcagaactgctcctgggc 287
             ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |
Sbjct: 60621 ctgtacaagctgatactcctgaccgtgcaataccataaccaatcagaactgctgctggac 60562

                                                                         
Query: 288   ttgcaaagagagccaacagggttgcattagcatctgtaaatgatgctagtgaggcttcag 347
             ||||||||||||||| || ||||||||||||||||||||||||||  || ||||||||| 
Sbjct: 60561 ttgcaaagagagccagcatggttgcattagcatctgtaaatgatgacagcgaggcttcaa 60502

                       
Query: 348   cgccaccaag 357
             ||||||||||
Sbjct: 60501 cgccaccaag 60492



 Score =  155 bits (78), Expect = 2e-34
 Identities = 135/154 (87%)
 Strand = Plus / Minus

                                                                         
Query: 370   actaagagacccaataacaacacaatcctgatgttgaaatcacggctattgttcatcctt 429
             |||||||| |||||| ||| ||||| ||||| |  ||||||| |||||| ||||| | ||
Sbjct: 59884 actaagaggcccaatgacagcacaagcctgaagcggaaatcagggctatcgttcagcatt 59825

                                                                         
Query: 430   aagtacttccaaaggtttcgaaggatctgaatatctgctatctgatcatcgatgtccttc 489
             ||||||||||||||||||||||| |||||    ||||||||||||||||| |||||||| 
Sbjct: 59824 aagtacttccaaaggtttcgaagaatctgcgcgtctgctatctgatcatcaatgtccttt 59765

                                               
Query: 490   tttggggcatctttatgcacgttgtcatcagccg 523
             ||||||||||||||||||||||| ||||||||||
Sbjct: 59764 tttggggcatctttatgcacgttatcatcagccg 59731



 Score =  145 bits (73), Expect = 2e-31
 Identities = 106/117 (90%)
 Strand = Plus / Minus

                                                                         
Query: 50    taactatgagtacctctagtattgtgggaacaatattgaacactgtcactgtaagaatga 109
             ||||| ||||||||||||||||||||||||||| |||||||||  |||||||||||||| 
Sbjct: 61783 taactgtgagtacctctagtattgtgggaacaacattgaacaccatcactgtaagaatgt 61724

                                                                      
Query: 110   aatttattgcattgctgcctctgtcaattatgcgatttagagctccagtttgccggc 166
             ||||||| |||   ||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 61723 aatttatggcacgactgcctcggtcaattatgcgatttagagctccagtttgacggc 61667



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                         
Query: 168   tcctggagactgaacggatggctctcaaggtaactttcgaaaataaagcattccgcagtt 227
             ||||||||||||||||||||||||||   || ||||| |||||||||||||| |||| ||
Sbjct: 60854 tcctggagactgaacggatggctctcgcagtcactttagaaaataaagcattgcgcaatt 60795

                
Query: 228   ctg 230
             |||
Sbjct: 60794 ctg 60792
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  131 bits (66), Expect = 3e-27
 Identities = 114/130 (87%)
 Strand = Plus / Plus

                                                                           
Query: 228     ctgtacaagctgatactcctgaccgcgcaataccatatccaatcagaactgctcctgggc 287
               ||||||| ||||||||||| || || ||||| ||||||||||||||||| ||| ||||||
Sbjct: 1499417 ctgtacaggctgatactcccgatcgtgcaattccatatccaatcagaacagctgctgggc 1499476

                                                                           
Query: 288     ttgcaaagagagccaacagggttgcattagcatctgtaaatgatgctagtgaggcttcag 347
               |||||||||||||||| ||||| |||||||| ||||| |||||||| ||||| | |||||
Sbjct: 1499477 ttgcaaagagagccaatagggtagcattagcctctgtgaatgatgcaagtgaagtttcag 1499536

                         
Query: 348     cgccaccaag 357
               | ||| ||||
Sbjct: 1499537 caccagcaag 1499546



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 95/111 (85%)
 Strand = Plus / Plus

                                                                           
Query: 56      tgagtacctctagtattgtgggaacaatattgaacactgtcactgtaagaatgaaattta 115
               |||||||||| | |||||||||||||| |||||||||  |||||||||| ||| ||||||
Sbjct: 1497279 tgagtacctccaatattgtgggaacaacattgaacaccatcactgtaaggatgtaattta 1497338

                                                                  
Query: 116     ttgcattgctgcctctgtcaattatgcgatttagagctccagtttgccggc 166
               | |||   || ||||  ||||||||||||||||| || |||||||||||||
Sbjct: 1497339 tcgcacgactacctcgatcaattatgcgatttagggcaccagtttgccggc 1497389



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                           
Query: 170     ctggagactgaacggatggctctcaaggtaactttcgaaaataaagcattccgcagttct 229
               |||||||||||||||||||||||||| || ||||| ||||| | |||||| |||||||||
Sbjct: 1499207 ctggagactgaacggatggctctcaatgtcactttagaaaagacagcatttcgcagttct 1499266

                
Query: 230     g 230
               |
Sbjct: 1499267 g 1499267
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>dbj|AP000391.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0538C01
          Length = 155643

 Score =  131 bits (66), Expect = 3e-27
 Identities = 114/130 (87%)
 Strand = Plus / Plus

                                                                         
Query: 228   ctgtacaagctgatactcctgaccgcgcaataccatatccaatcagaactgctcctgggc 287
             ||||||| ||||||||||| || || ||||| ||||||||||||||||| ||| ||||||
Sbjct: 28141 ctgtacaggctgatactcccgatcgtgcaattccatatccaatcagaacagctgctgggc 28200

                                                                         
Query: 288   ttgcaaagagagccaacagggttgcattagcatctgtaaatgatgctagtgaggcttcag 347
             |||||||||||||||| ||||| |||||||| ||||| |||||||| ||||| | |||||
Sbjct: 28201 ttgcaaagagagccaatagggtagcattagcctctgtgaatgatgcaagtgaagtttcag 28260

                       
Query: 348   cgccaccaag 357
             | ||| ||||
Sbjct: 28261 caccagcaag 28270



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 95/111 (85%)
 Strand = Plus / Plus

                                                                         
Query: 56    tgagtacctctagtattgtgggaacaatattgaacactgtcactgtaagaatgaaattta 115
             |||||||||| | |||||||||||||| |||||||||  |||||||||| ||| ||||||
Sbjct: 26003 tgagtacctccaatattgtgggaacaacattgaacaccatcactgtaaggatgtaattta 26062

                                                                
Query: 116   ttgcattgctgcctctgtcaattatgcgatttagagctccagtttgccggc 166
             | |||   || ||||  ||||||||||||||||| || |||||||||||||
Sbjct: 26063 tcgcacgactacctcgatcaattatgcgatttagggcaccagtttgccggc 26113



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                         
Query: 170   ctggagactgaacggatggctctcaaggtaactttcgaaaataaagcattccgcagttct 229
             |||||||||||||||||||||||||| || ||||| ||||| | |||||| |||||||||
Sbjct: 27931 ctggagactgaacggatggctctcaatgtcactttagaaaagacagcatttcgcagttct 27990

              
Query: 230   g 230
             |
Sbjct: 27991 g 27991
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>gb|AC016542.11| Homo sapiens chromosome 10 clone RP11-354E23, complete sequence
          Length = 171480

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 480    gatgtccttctttggggcatct 501
              ||||||||||||||||||||||
Sbjct: 127962 gatgtccttctttggggcatct 127983
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>gb|AC121917.2| Mus musculus BAC clone RP24-194F23 from 5, complete sequence
          Length = 178113

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 200    actttcgaaaataaagcattc 220
              |||||||||||||||||||||
Sbjct: 168532 actttcgaaaataaagcattc 168512
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>emb|AL645766.5| Mouse DNA sequence from clone RP23-41B10 on chromosome 2 Contains a
             novel gene C330008G21Rik, complete sequence
          Length = 73575

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 304   cagggttgcattagcatctgtaaat 328
             |||||||||||| ||||||||||||
Sbjct: 62157 cagggttgcatttgcatctgtaaat 62133
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>gb|AC133065.3| Homo sapiens chromosome 16 clone RP11-876N24, complete sequence
          Length = 142215

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 89    acactgtcactgtaagaatga 109
             |||||||||||||||||||||
Sbjct: 36499 acactgtcactgtaagaatga 36519
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>emb|BX001038.6| Zebrafish DNA sequence from clone CH211-12M10 in linkage group 17,
             complete sequence
          Length = 180659

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 397   ctgatgttgaaatcacggctattgt 421
             ||||||||||||||| |||||||||
Sbjct: 30688 ctgatgttgaaatcagggctattgt 30664
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>emb|AL591032.19| Mouse DNA sequence from clone RP22-211A10 on chromosome 4, complete
              sequence
          Length = 205573

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 165    gcatcctggagactgaacggatggc 189
              |||||||||||||||||| ||||||
Sbjct: 189185 gcatcctggagactgaactgatggc 189161
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>emb|AL607123.22| Mouse DNA sequence from clone RP23-391E6 on chromosome 4, complete
             sequence
          Length = 149369

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 165   gcatcctggagactgaacggatggc 189
             |||||||||||||||||| ||||||
Sbjct: 18704 gcatcctggagactgaactgatggc 18680
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 313     attagcatctgtaaatgatg 332
               ||||||||||||||||||||
Sbjct: 4182027 attagcatctgtaaatgatg 4182008
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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 313     attagcatctgtaaatgatg 332
               ||||||||||||||||||||
Sbjct: 4192870 attagcatctgtaaatgatg 4192851
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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 313     attagcatctgtaaatgatg 332
               ||||||||||||||||||||
Sbjct: 4193242 attagcatctgtaaatgatg 4193223
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>ref|XM_669449.1| Plasmodium berghei strain ANKA Pb-fam-1 protein (PB100300.00.0)
           partial mRNA
          Length = 414

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 199 aactttcgaaaataaagcat 218
           ||||||||||||||||||||
Sbjct: 72  aactttcgaaaataaagcat 53
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>ref|XM_674075.1| Plasmodium berghei strain ANKA Pb-fam-1 protein (PB105685.00.0)
           partial mRNA
          Length = 150

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 199 aactttcgaaaataaagcat 218
           ||||||||||||||||||||
Sbjct: 72  aactttcgaaaataaagcat 53
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>gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, complete sequence
          Length = 226307

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 458    gaatatctgctatctgatca 477
              ||||||||||||||||||||
Sbjct: 120396 gaatatctgctatctgatca 120415
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 313     attagcatctgtaaatgatg 332
               ||||||||||||||||||||
Sbjct: 4236339 attagcatctgtaaatgatg 4236320
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>emb|AL161550.2|ATCHRIV50 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 50
          Length = 199382

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 576    aaatattgagtggtccttct 595
              ||||||||||||||||||||
Sbjct: 181171 aaatattgagtggtccttct 181190
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>emb|AL022580.1|ATT5K18 Arabidopsis thaliana DNA chromosome 4, BAC clone T5K18 (ESSA project)
          Length = 90551

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 576   aaatattgagtggtccttct 595
             ||||||||||||||||||||
Sbjct: 75120 aaatattgagtggtccttct 75139
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>emb|CR626922.13| Zebrafish DNA sequence from clone DKEY-33K14 in linkage group 18,
              complete sequence
          Length = 122627

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 71     ttgtgggaacaatattgaacactg 94
              ||||| ||||||||||||||||||
Sbjct: 100213 ttgtgtgaacaatattgaacactg 100236
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>gb|AC158240.5| Pan troglodytes BAC clone CH251-542M19 from chromosome unknown, complete
              sequence
          Length = 217064

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     aacactgtcactgtaagaat 107
              ||||||||||||||||||||
Sbjct: 198303 aacactgtcactgtaagaat 198284
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>gb|AC104302.2| Homo sapiens chromosome 3 clone RP11-379L20, complete sequence
          Length = 206872

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 612   gatggagtaccactgccatg 631
             ||||||||||||||||||||
Sbjct: 57456 gatggagtaccactgccatg 57475
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 619      taccactgccatggcgccat 638
                ||||||||||||||||||||
Sbjct: 30015618 taccactgccatggcgccat 30015637
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>gb|AC157956.2| Pan troglodytes BAC clone CH251-379N13 from chromosome unknown, complete
              sequence
          Length = 164394

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     aacactgtcactgtaagaat 107
              ||||||||||||||||||||
Sbjct: 160726 aacactgtcactgtaagaat 160745
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>gb|AC009955.4|AC009955 Homo sapiens BAC clone RP11-256I23 from 2, complete sequence
          Length = 135033

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     aacactgtcactgtaagaat 107
              ||||||||||||||||||||
Sbjct: 127919 aacactgtcactgtaagaat 127900
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>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0690B02
          Length = 153116

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 619   taccactgccatggcgccat 638
             ||||||||||||||||||||
Sbjct: 11608 taccactgccatggcgccat 11627
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>gb|AC113417.2| Homo sapiens chromosome 5 clone RP11-569B5, complete sequence
          Length = 79230

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   aggatctgaatatctgctat 470
             ||||||||||||||||||||
Sbjct: 59016 aggatctgaatatctgctat 58997
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>emb|Y16834.1|CAHGT1 Candida albicans HGT1 gene
          Length = 3288

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 540  attggcagaagtggagaaggcatt 563
            ||||||||||||||||| ||||||
Sbjct: 2421 attggcagaagtggagatggcatt 2398
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>gb|AF095080.1|AF095080 HIV-1 strain Ak/BM-15 country USA envelope glycoprotein (env) gene,
           partial cds
          Length = 230

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 376 agacccaataacaacacaat 395
           ||||||||||||||||||||
Sbjct: 49  agacccaataacaacacaat 68
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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 313     attagcatctgtaaatgatg 332
               ||||||||||||||||||||
Sbjct: 4192743 attagcatctgtaaatgatg 4192724


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,431,913
Number of Sequences: 3902068
Number of extensions: 5431913
Number of successful extensions: 96638
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96389
Number of HSP's gapped (non-prelim): 243
length of query: 681
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 658
effective length of database: 17,143,297,704
effective search space: 11280289889232
effective search space used: 11280289889232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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