ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24a16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BSL2_ARATH (Q9SJF0) Serine/threonine-protein phosphatase BSL2 (E... 51 3e-06
2BSL1_ARATH (Q8L7U5) Serine/threonine-protein phosphatase BSL1 (E... 39 0.016
3KR134_HYLLA (Q4W7H0) Keratin-associated protein 13-4 32 1.5
4KR134_HYLAG (Q4W7H1) Keratin-associated protein 13-4 32 1.5
5GP110_HUMAN (Q5T601) Probable G-protein coupled receptor 110 pre... 32 1.5
6DPOG2_HUMAN (Q9UHN1) DNA polymerase gamma subunit 2, mitochondri... 31 2.6
7YJG8_YEAST (P40363) Hypothetical 33.9 kDa esterase in SMC3-MRPL8... 29 9.9

>BSL2_ARATH (Q9SJF0) Serine/threonine-protein phosphatase BSL2 (EC 3.1.3.16)|
            (BSU1-like protein 2)
          Length = 1088

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 24/31 (77%), Positives = 26/31 (83%)
 Frame = -1

Query: 621  MQELNANRPPTPTRGRPQAANNDRAGPLAWI 529
            MQELNANRP TPTRGRPQ  +NDR G LAW+
Sbjct: 1059 MQELNANRPATPTRGRPQ-NSNDRGGSLAWM 1088



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>BSL1_ARATH (Q8L7U5) Serine/threonine-protein phosphatase BSL1 (EC 3.1.3.16)|
           (BSU1-like protein 1)
          Length = 881

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = -1

Query: 621 MQELNANRPPTPTRGRPQ 568
           MQELN  RPPTPTRGRPQ
Sbjct: 853 MQELNIQRPPTPTRGRPQ 870



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>KR134_HYLLA (Q4W7H0) Keratin-associated protein 13-4|
          Length = 160

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 21/72 (29%), Positives = 28/72 (38%)
 Frame = -2

Query: 524 SFAAC*SNLFYVSVSGFWLYLSFCPTGG*SYAQVTCYPTTTMATGYLLRGSSKLSDLRAK 345
           S+  C  N    S  G+  Y   CP+    Y+   C P+T      L R   K     A 
Sbjct: 2   SYNCCSRNFSSRSFGGYLYYPGSCPSSL-VYSTALCSPSTCQLGSSLYRDCQKTCWEPAS 60

Query: 344 AEKFCGSPRTEL 309
            +K C  PRT +
Sbjct: 61  CQKSCYHPRTSM 72



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>KR134_HYLAG (Q4W7H1) Keratin-associated protein 13-4|
          Length = 160

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 21/72 (29%), Positives = 28/72 (38%)
 Frame = -2

Query: 524 SFAAC*SNLFYVSVSGFWLYLSFCPTGG*SYAQVTCYPTTTMATGYLLRGSSKLSDLRAK 345
           S+  C  N    S  G+  Y   CP+    Y+   C P+T      L R   K     A 
Sbjct: 2   SYNCCSRNFSSRSFGGYLYYPGSCPSSL-VYSTALCSPSTCQLGSSLYRDCQKTCWEPAS 60

Query: 344 AEKFCGSPRTEL 309
            +K C  PRT +
Sbjct: 61  CQKSCYHPRTSM 72



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>GP110_HUMAN (Q5T601) Probable G-protein coupled receptor 110 precursor|
           (G-protein coupled receptor PGR19) (G-protein coupled
           receptor KPG_012)
          Length = 911

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 428 QVTCYPTTTMATGYLLRGSSKLSDLRAKAEKFCGSPRTELSKLFP 294
           QVT +   ++  GY + GSS  S+L +  E      +T L KLFP
Sbjct: 200 QVTQFRNGSIVAGYEVVGSSSASELLSAIEHVAEKAKTALHKLFP 244



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>DPOG2_HUMAN (Q9UHN1) DNA polymerase gamma subunit 2, mitochondrial precursor|
           (EC 2.7.7.7) (Mitochondrial DNA polymerase accessory
           subunit) (PolG-beta) (MtPolB) (DNA polymerase gamma
           accessory 55 kDa subunit) (p55)
          Length = 485

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = +2

Query: 188 HPTYLPAGI*AYVQVKPSRQDLSVSRWSAPLLVMFREKAWRALSAVIHKTSPLLPSD 358
           HP + P G+         R++L+   W++  +V+FRE+ +  + A+ HK  PLLP D
Sbjct: 96  HPGFGPLGV-------ELRKNLAAEWWTS--VVVFREQVF-PVDALHHKPGPLLPGD 142



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>YJG8_YEAST (P40363) Hypothetical 33.9 kDa esterase in SMC3-MRPL8 intergenic|
           region (EC 3.1.1.-)
          Length = 299

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 61  FXPLHYFATCWEKETRHRKRIPSTITLSSPSATPSNLSTK 180
           + P HY+A    ++    KRIP+   LS  + TP N S K
Sbjct: 33  YLPKHYYA----QDFPRNKRIPTVFYLSGLTCTPDNASEK 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,415,716
Number of Sequences: 219361
Number of extensions: 1943363
Number of successful extensions: 4795
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4785
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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