ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24a14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477665.1| Oryza sativa (japonica cultivar-group), mRNA 109 8e-21
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
3dbj|AP004305.3| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
4dbj|AK060230.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 8e-21
5gb|AY105616.1| Zea mays PCO125437 mRNA sequence 94 5e-16
6gb|BC106195.1| Mus musculus cDNA sequence BC055004, mRNA (cDNA c... 44 0.41
7ref|NM_001013773.1| Mus musculus cDNA sequence BC055004 (BC05500... 44 0.41
8gb|AC159257.2| Mus musculus BAC clone RP24-86H20 from chromosome... 44 0.41
9gb|BC055004.1| Mus musculus cDNA sequence BC055004, mRNA (cDNA c... 44 0.41
10ref|XM_979444.1| PREDICTED: Mus musculus gene model 454, (NCBI) ... 44 0.41
11ref|XM_984193.1| PREDICTED: Mus musculus gene model 454, (NCBI) ... 44 0.41
12ref|XM_001000527.1| PREDICTED: Mus musculus gene model 454, (NCB... 44 0.41
13gb|AC157588.8| Mus musculus BAC clone RP24-95J4 from chromosome ... 44 0.41
14dbj|AK138922.1| Mus musculus adult male aorta and vein cDNA, RIK... 44 0.41
15dbj|AK156114.1| Mus musculus activated spleen cDNA, RIKEN full-l... 44 0.41
16dbj|AK154713.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 44 0.41
17dbj|AK171365.1| Mus musculus B6-derived CD11 +ve dendritic cells... 44 0.41
18emb|CR352251.11| Zebrafish DNA sequence from clone CH211-138M21 ... 42 1.6
19emb|AL929295.7| Zebrafish DNA sequence from clone BUSM1-71B9 in ... 42 1.6
20emb|AL627423.27| Zebrafish DNA sequence from clone RP71-1O24 in ... 42 1.6
21emb|CR749163.11| Zebrafish DNA sequence from clone CH211-216B21 ... 42 1.6
22emb|CR352253.9| Zebrafish DNA sequence from clone CH211-267D1 in... 42 1.6
23emb|BX323073.12| Zebrafish DNA sequence from clone DKEY-117J3 in... 42 1.6
24emb|BX511065.4| Zebrafish DNA sequence from clone DKEY-32I16 in ... 42 1.6
25emb|BX511189.4| Zebrafish DNA sequence from clone DKEY-28G23 in ... 42 1.6
26emb|BX510352.17| Zebrafish DNA sequence from clone DKEY-96J11 in... 42 1.6
27gb|AC092440.5| Homo sapiens BAC clone RP11-453O5 from 4, complet... 42 1.6
28gb|AC140734.5| Rattus norvegicus BAC CH230-55I15 (Children's Ho... 42 1.6
29emb|BX682548.7| Zebrafish DNA sequence from clone DKEY-94A14 in ... 42 1.6
30emb|BX571694.10| Zebrafish DNA sequence from clone CH211-159E21 ... 42 1.6
31emb|BX663518.10| Zebrafish DNA sequence from clone CH211-214O7 i... 42 1.6
32emb|BX005174.12| Zebrafish DNA sequence from clone CH211-134M17 ... 42 1.6
33emb|AL929596.11| Zebrafish DNA sequence from clone DKEY-53H9, co... 42 1.6
34emb|BX000984.7| Zebrafish DNA sequence from clone CH211-157C7, c... 42 1.6
35emb|BX324212.8| Zebrafish DNA sequence from clone CH211-209N20 i... 42 1.6
36emb|AL954320.5| Zebrafish DNA sequence from clone CH211-220G18 i... 42 1.6
37emb|BX000349.7| Zebrafish DNA sequence from clone DKEY-63L3 in l... 42 1.6
38emb|BX908726.21| Zebrafish DNA sequence from clone DKEY-74I2 in ... 42 1.6
39emb|BX088549.9| Zebrafish DNA sequence from clone CH211-208G1 in... 42 1.6
40emb|AL954868.6| Zebrafish DNA sequence from clone CH211-254N4 in... 42 1.6
41emb|CT025748.16| Zebrafish DNA sequence from clone CH73-166N24 i... 42 1.6
42emb|AL928878.10| Zebrafish DNA sequence from clone BUSM1-148B8, ... 42 1.6
43emb|AL928637.7| Zebrafish DNA sequence from clone CH211-227I6, c... 42 1.6
44gb|AY067317.1| Schmidtea mediterranea clone HB.4.1f unknown mRNA... 42 1.6
45gb|AC137124.17| Mus musculus chromosome 3, clone RP24-229P11, co... 40 6.4
46gb|AC114342.12| Mus musculus chromosome 5, clone RP24-143H14, co... 40 6.4
47gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 6.4
48gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 6.4
49gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 6.4
50emb|CR933526.10| Zebrafish DNA sequence from clone DKEY-208P7 in... 40 6.4
51gb|AY325900.1| Pseudomonas syringae pv. maculicola RpoN gene, pa... 40 6.4
52emb|AL135940.11| Human DNA sequence from clone RP5-896L12 on chr... 40 6.4
53gb|AC163089.3| Mus musculus chromosome 5, clone RP23-346P15, com... 40 6.4
54gb|AF538690.1| Pseudomonas alcaligenes sigma 54 (rpoN) gene, par... 40 6.4
55emb|X16474.1|PPRPONS P.putida rpoN gene for sigma Factor 40 6.4
56emb|AJ496594.1|PST496594 Pseudomonas stutzeri partial rpoN opero... 40 6.4
57gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 6.4
58gb|AE012110.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.4
59gb|AF283815.1|AF283815 Pseudomonas syringae pv. glycinea transcr... 40 6.4
60gb|AY341911.1| Pseudomonas fluorescens probable ATP-binding comp... 40 6.4
61gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.4
62gb|AC008741.7| Homo sapiens chromosome 16 clone CTD-2547G23, com... 40 6.4
63gb|AC104655.4| Homo sapiens BAC clone RP11-383P6 from 2, complet... 40 6.4
64gb|AE004860.1| Pseudomonas aeruginosa PAO1, section 421 of 529 o... 40 6.4
65gb|AF199600.1|AF199600 Pseudomonas syringae pv. maculicola alter... 40 6.4
66emb|BX120008.9| Zebrafish DNA sequence from clone CH211-215G18 i... 40 6.4
67emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 6.4
68gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 6.4
69emb|AL928882.10| Mouse DNA sequence from clone RP23-281I20 on ch... 40 6.4
70gb|M24916.1|PSENTRAA P.putida sigma factor (ntrA) gene, complete... 40 6.4
71gb|L26916.1|PSERPON Pseudomonas aeruginosa (rpoN) gene, complete... 40 6.4
72dbj|D42111.1|TOBBY2 Tobacco mRNA 40 6.4 
>ref|XM_477665.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1962

 Score =  109 bits (55), Expect = 8e-21
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                        
Query: 344  ccagcaccaagccctgagcccacgagcccaacacccccggcaacgccagtgcccacaaat 403
            ||||||||||  ||||| || || || ||||| || ||| ||| |||||||||||||| |
Sbjct: 1513 ccagcaccaattcctgatccaacaagtccaaccccgccgacaatgccagtgcccacaagt 1454

                                                                        
Query: 404  ccaacacctgaaccaactagtgaagcggcgccaccaagtgcatccatcgtgctgccaatt 463
            |||||||| ||||||||||||||||| || |||||||| |||||||| || || ||||| 
Sbjct: 1453 ccaacaccagaaccaactagtgaagcagcaccaccaagagcatccattgtactaccaata 1394

                       
Query: 464  accccagcctc 474
            |||||||||||
Sbjct: 1393 accccagcctc 1383



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 129/156 (82%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcactgtacatcaagttatgcagaaggctggtcaggttggggaacagtggagctgctacc 234
            |||||||||||||||| | |||||||| || ||||  |||||| |||| |||||||||||
Sbjct: 1703 tcactgtacatcaagtcacgcagaaggttgttcagcctggggagcagttgagctgctacc 1644

                                                                        
Query: 235  actcttacgagatatgcccaagtgccctgtcacagtcctccccatgaacttcccagcttt 294
              |||| || || || |  ||  |||| | ||||||| | |||||||| |||||||||||
Sbjct: 1643 gttcttccgggacatactgaaaggcccggccacagtcttgcccatgaatttcccagcttt 1584

                                                
Query: 295  accaaggccgctgcccacggcgccaataccagaacc 330
            ||| ||||||||||| || ||||||||||| |||||
Sbjct: 1583 accgaggccgctgccgacagcgccaatacccgaacc 1548
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  109 bits (55), Expect = 8e-21
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                            
Query: 344      ccagcaccaagccctgagcccacgagcccaacacccccggcaacgccagtgcccacaaat 403
                ||||||||||  ||||| || || || ||||| || ||| ||| |||||||||||||| |
Sbjct: 12706625 ccagcaccaattcctgatccaacaagtccaaccccgccgacaatgccagtgcccacaagt 12706566

                                                                            
Query: 404      ccaacacctgaaccaactagtgaagcggcgccaccaagtgcatccatcgtgctgccaatt 463
                |||||||| ||||||||||||||||| || |||||||| |||||||| || || ||||| 
Sbjct: 12706565 ccaacaccagaaccaactagtgaagcagcaccaccaagagcatccattgtactaccaata 12706506

                           
Query: 464      accccagcctc 474
                |||||||||||
Sbjct: 12706505 accccagcctc 12706495



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 129/156 (82%)
 Strand = Plus / Minus

                                                                            
Query: 175      tcactgtacatcaagttatgcagaaggctggtcaggttggggaacagtggagctgctacc 234
                |||||||||||||||| | |||||||| || ||||  |||||| |||| |||||||||||
Sbjct: 12706815 tcactgtacatcaagtcacgcagaaggttgttcagcctggggagcagttgagctgctacc 12706756

                                                                            
Query: 235      actcttacgagatatgcccaagtgccctgtcacagtcctccccatgaacttcccagcttt 294
                  |||| || || || |  ||  |||| | ||||||| | |||||||| |||||||||||
Sbjct: 12706755 gttcttccgggacatactgaaaggcccggccacagtcttgcccatgaatttcccagcttt 12706696

                                                    
Query: 295      accaaggccgctgcccacggcgccaataccagaacc 330
                ||| ||||||||||| || ||||||||||| |||||
Sbjct: 12706695 accgaggccgctgccgacagcgccaatacccgaacc 12706660
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>dbj|AP004305.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0492E07
          Length = 143794

 Score =  109 bits (55), Expect = 8e-21
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                         
Query: 344   ccagcaccaagccctgagcccacgagcccaacacccccggcaacgccagtgcccacaaat 403
             ||||||||||  ||||| || || || ||||| || ||| ||| |||||||||||||| |
Sbjct: 81095 ccagcaccaattcctgatccaacaagtccaaccccgccgacaatgccagtgcccacaagt 81036

                                                                         
Query: 404   ccaacacctgaaccaactagtgaagcggcgccaccaagtgcatccatcgtgctgccaatt 463
             |||||||| ||||||||||||||||| || |||||||| |||||||| || || ||||| 
Sbjct: 81035 ccaacaccagaaccaactagtgaagcagcaccaccaagagcatccattgtactaccaata 80976

                        
Query: 464   accccagcctc 474
             |||||||||||
Sbjct: 80975 accccagcctc 80965



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 129/156 (82%)
 Strand = Plus / Minus

                                                                         
Query: 175   tcactgtacatcaagttatgcagaaggctggtcaggttggggaacagtggagctgctacc 234
             |||||||||||||||| | |||||||| || ||||  |||||| |||| |||||||||||
Sbjct: 81285 tcactgtacatcaagtcacgcagaaggttgttcagcctggggagcagttgagctgctacc 81226

                                                                         
Query: 235   actcttacgagatatgcccaagtgccctgtcacagtcctccccatgaacttcccagcttt 294
               |||| || || || |  ||  |||| | ||||||| | |||||||| |||||||||||
Sbjct: 81225 gttcttccgggacatactgaaaggcccggccacagtcttgcccatgaatttcccagcttt 81166

                                                 
Query: 295   accaaggccgctgcccacggcgccaataccagaacc 330
             ||| ||||||||||| || ||||||||||| |||||
Sbjct: 81165 accgaggccgctgccgacagcgccaatacccgaacc 81130
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>dbj|AK060230.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-H02, full
            insert sequence
          Length = 1967

 Score =  109 bits (55), Expect = 8e-21
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                        
Query: 344  ccagcaccaagccctgagcccacgagcccaacacccccggcaacgccagtgcccacaaat 403
            ||||||||||  ||||| || || || ||||| || ||| ||| |||||||||||||| |
Sbjct: 1511 ccagcaccaattcctgatccaacaagtccaaccccgccgacaatgccagtgcccacaagt 1452

                                                                        
Query: 404  ccaacacctgaaccaactagtgaagcggcgccaccaagtgcatccatcgtgctgccaatt 463
            |||||||| ||||||||||||||||| || |||||||| |||||||| || || ||||| 
Sbjct: 1451 ccaacaccagaaccaactagtgaagcagcaccaccaagagcatccattgtactaccaata 1392

                       
Query: 464  accccagcctc 474
            |||||||||||
Sbjct: 1391 accccagcctc 1381



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 128/156 (82%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcactgtacatcaagttatgcagaaggctggtcaggttggggaacagtggagctgctacc 234
            |||||||||||||||| | |||||||| || ||||  |||||| | || |||||||||||
Sbjct: 1701 tcactgtacatcaagtcacgcagaaggttgttcagcctggggagccgttgagctgctacc 1642

                                                                        
Query: 235  actcttacgagatatgcccaagtgccctgtcacagtcctccccatgaacttcccagcttt 294
              |||| || || || |  ||  |||| | ||||||| | |||||||| |||||||||||
Sbjct: 1641 gttcttccgggacatactgaaaggcccggccacagtcttgcccatgaatttcccagcttt 1582

                                                
Query: 295  accaaggccgctgcccacggcgccaataccagaacc 330
            ||| ||||||||||| || ||||||||||| |||||
Sbjct: 1581 accgaggccgctgccgacagcgccaatacccgaacc 1546
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>gb|AY105616.1| Zea mays PCO125437 mRNA sequence
          Length = 968

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 134/163 (82%)
 Strand = Plus / Minus

                                                                       
Query: 258 gccctgtcacagtcctccccatgaacttcccagctttaccaaggccgctgcccacggcgc 317
           |||||||||||||||| |||||||||||||| |||||||||||||| ||||  || || |
Sbjct: 742 gccctgtcacagtcctgcccatgaacttcccggctttaccaaggccactgctgacagcac 683

                                                                       
Query: 318 caataccagaacctaccagaccagcgccagcaccaagccctgagcccacgagcccaacac 377
           ||||||||||    || || || |||||||||||||  ||||| || ||||  || |  |
Sbjct: 682 caataccagaggtaacaaggcctgcgccagcaccaattcctgaaccaacgaaaccgaggc 623

                                                      
Query: 378 ccccggcaacgccagtgcccacaaatccaacacctgaaccaac 420
           |  || ||| |||||| ||||||||||||||||| ||||||||
Sbjct: 622 cagcgccaatgccagtacccacaaatccaacaccagaaccaac 580
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>gb|BC106195.1| Mus musculus cDNA sequence BC055004, mRNA (cDNA clone MGC:118496
           IMAGE:6396133), complete cds
          Length = 3378

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 196 agaaggctggtcaggttgggga 217
           ||||||||||||||||||||||
Sbjct: 444 agaaggctggtcaggttgggga 423
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>ref|NM_001013773.1| Mus musculus cDNA sequence BC055004 (BC055004), mRNA
          Length = 2596

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 196 agaaggctggtcaggttgggga 217
           ||||||||||||||||||||||
Sbjct: 262 agaaggctggtcaggttgggga 241
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>gb|AC159257.2| Mus musculus BAC clone RP24-86H20 from chromosome 5, complete sequence
          Length = 202099

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 196    agaaggctggtcaggttgggga 217
              ||||||||||||||||||||||
Sbjct: 145959 agaaggctggtcaggttgggga 145938



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 196    agaaggctggtcaggttgggga 217
              ||||||||||||||||||||||
Sbjct: 110631 agaaggctggtcaggttgggga 110652
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>gb|BC055004.1| Mus musculus cDNA sequence BC055004, mRNA (cDNA clone MGC:57066
           IMAGE:6478735), complete cds
          Length = 2596

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 196 agaaggctggtcaggttgggga 217
           ||||||||||||||||||||||
Sbjct: 262 agaaggctggtcaggttgggga 241
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>ref|XM_979444.1| PREDICTED: Mus musculus gene model 454, (NCBI) (Gm454), mRNA
          Length = 1387

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 196 agaaggctggtcaggttgggga 217
           ||||||||||||||||||||||
Sbjct: 317 agaaggctggtcaggttgggga 296
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>ref|XM_984193.1| PREDICTED: Mus musculus gene model 454, (NCBI) (Gm454), mRNA
          Length = 1183

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 196 agaaggctggtcaggttgggga 217
           ||||||||||||||||||||||
Sbjct: 164 agaaggctggtcaggttgggga 143
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>ref|XM_001000527.1| PREDICTED: Mus musculus gene model 454, (NCBI) (Gm454), mRNA
          Length = 1183

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 196 agaaggctggtcaggttgggga 217
           ||||||||||||||||||||||
Sbjct: 164 agaaggctggtcaggttgggga 143
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>gb|AC157588.8| Mus musculus BAC clone RP24-95J4 from chromosome 5, complete sequence
          Length = 220137

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 196    agaaggctggtcaggttgggga 217
              ||||||||||||||||||||||
Sbjct: 191512 agaaggctggtcaggttgggga 191491



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 196    agaaggctggtcaggttgggga 217
              ||||||||||||||||||||||
Sbjct: 156184 agaaggctggtcaggttgggga 156205
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>dbj|AK138922.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530006K22 product:hypothetical
           protein, full insert sequence
          Length = 754

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 196 agaaggctggtcaggttgggga 217
           ||||||||||||||||||||||
Sbjct: 317 agaaggctggtcaggttgggga 296
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>dbj|AK156114.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830008F20 product:hypothetical protein,
           full insert sequence
          Length = 2381

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 196 agaaggctggtcaggttgggga 217
           ||||||||||||||||||||||
Sbjct: 648 agaaggctggtcaggttgggga 627
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>dbj|AK154713.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630104E04
            product:hypothetical protein, full insert sequence
          Length = 1554

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 196  agaaggctggtcaggttgggga 217
            ||||||||||||||||||||||
Sbjct: 1255 agaaggctggtcaggttgggga 1234
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>dbj|AK171365.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F730044C15
            product:hypothetical protein, full insert sequence
          Length = 1554

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 196  agaaggctggtcaggttgggga 217
            ||||||||||||||||||||||
Sbjct: 1255 agaaggctggtcaggttgggga 1234
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>emb|CR352251.11| Zebrafish DNA sequence from clone CH211-138M21 in linkage group 10,
              complete sequence
          Length = 175847

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 23     atttacagtaatctgtcgtgg 43
              |||||||||||||||||||||
Sbjct: 157349 atttacagtaatctgtcgtgg 157329
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>emb|AL929295.7| Zebrafish DNA sequence from clone BUSM1-71B9 in linkage group 7
             Contains three novel genes similar to cdh1 (epithelial
             cadherin 1), complete sequence
          Length = 99338

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    atttacagtaatctgtcgtgg 43
             |||||||||||||||||||||
Sbjct: 16422 atttacagtaatctgtcgtgg 16402
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>emb|AL627423.27| Zebrafish DNA sequence from clone RP71-1O24 in linkage group 1,
             complete sequence
          Length = 133325

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    atttacagtaatctgtcgtgg 43
             |||||||||||||||||||||
Sbjct: 21217 atttacagtaatctgtcgtgg 21237
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>emb|CR749163.11| Zebrafish DNA sequence from clone CH211-216B21 in linkage group 5,
              complete sequence
          Length = 189369

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 23     atttacagtaatctgtcgtgg 43
              |||||||||||||||||||||
Sbjct: 134002 atttacagtaatctgtcgtgg 134022
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>emb|CR352253.9| Zebrafish DNA sequence from clone CH211-267D1 in linkage group 13,
             complete sequence
          Length = 160748

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    taattgttgtaatttacagta 32
             |||||||||||||||||||||
Sbjct: 20646 taattgttgtaatttacagta 20626
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>emb|BX323073.12| Zebrafish DNA sequence from clone DKEY-117J3 in linkage group 21,
             complete sequence
          Length = 118703

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    atttacagtaatctgtcgtgg 43
             |||||||||||||||||||||
Sbjct: 40767 atttacagtaatctgtcgtgg 40787
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>emb|BX511065.4| Zebrafish DNA sequence from clone DKEY-32I16 in linkage group 7,
             complete sequence
          Length = 104505

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 12    taattgttgtaatttacagta 32
             |||||||||||||||||||||
Sbjct: 50067 taattgttgtaatttacagta 50087
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>emb|BX511189.4| Zebrafish DNA sequence from clone DKEY-28G23 in linkage group 17,
             complete sequence
          Length = 112714

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    atttacagtaatctgtcgtgg 43
             |||||||||||||||||||||
Sbjct: 78312 atttacagtaatctgtcgtgg 78292
to top
>emb|BX510352.17| Zebrafish DNA sequence from clone DKEY-96J11 in linkage group 18,
             complete sequence
          Length = 152387

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    taattgttgtaatttacagta 32
             |||||||||||||||||||||
Sbjct: 70820 taattgttgtaatttacagta 70800
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>gb|AC092440.5| Homo sapiens BAC clone RP11-453O5 from 4, complete sequence
          Length = 164781

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 244    agatatgcccaagtgccctgt 264
              |||||||||||||||||||||
Sbjct: 141115 agatatgcccaagtgccctgt 141095
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>gb|AC140734.5| Rattus norvegicus  BAC CH230-55I15 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 230896

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 56    tagaatacaataaagtaaccaacaa 80
             ||||| |||||||||||||||||||
Sbjct: 56198 tagaacacaataaagtaaccaacaa 56222
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>emb|BX682548.7| Zebrafish DNA sequence from clone DKEY-94A14 in linkage group 2,
             complete sequence
          Length = 111741

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    atttacagtaatctgtcgtgg 43
             |||||||||||||||||||||
Sbjct: 12932 atttacagtaatctgtcgtgg 12912
to top
>emb|BX571694.10| Zebrafish DNA sequence from clone CH211-159E21 in linkage group 10,
              complete sequence
          Length = 163542

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 23     atttacagtaatctgtcgtgg 43
              |||||||||||||||||||||
Sbjct: 142210 atttacagtaatctgtcgtgg 142190
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>emb|BX663518.10| Zebrafish DNA sequence from clone CH211-214O7 in linkage group 7,
             complete sequence
          Length = 200579

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    ttgttgtaatttacagtaatc 35
             |||||||||||||||||||||
Sbjct: 96666 ttgttgtaatttacagtaatc 96686
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>emb|BX005174.12| Zebrafish DNA sequence from clone CH211-134M17 in linkage group 13,
             complete sequence
          Length = 178371

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    atttacagtaatctgtcgtgg 43
             |||||||||||||||||||||
Sbjct: 25959 atttacagtaatctgtcgtgg 25979
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>emb|AL929596.11| Zebrafish DNA sequence from clone DKEY-53H9, complete sequence
          Length = 191874

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 23     atttacagtaatctgtcgtgg 43
              |||||||||||||||||||||
Sbjct: 164439 atttacagtaatctgtcgtgg 164419
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>emb|BX000984.7| Zebrafish DNA sequence from clone CH211-157C7, complete sequence
          Length = 160029

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 23   atttacagtaatctgtcgtgg 43
            |||||||||||||||||||||
Sbjct: 8051 atttacagtaatctgtcgtgg 8031
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>emb|BX324212.8| Zebrafish DNA sequence from clone CH211-209N20 in linkage group 4,
              complete sequence
          Length = 212125

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 23     atttacagtaatctgtcgtgg 43
              |||||||||||||||||||||
Sbjct: 125588 atttacagtaatctgtcgtgg 125608
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>emb|AL954320.5| Zebrafish DNA sequence from clone CH211-220G18 in linkage group 25,
              complete sequence
          Length = 215130

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 23     atttacagtaatctgtcgtgg 43
              |||||||||||||||||||||
Sbjct: 126412 atttacagtaatctgtcgtgg 126432
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>emb|BX000349.7| Zebrafish DNA sequence from clone DKEY-63L3 in linkage group 7, complete
              sequence
          Length = 173706

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 15     ttgttgtaatttacagtaatc 35
              |||||||||||||||||||||
Sbjct: 142042 ttgttgtaatttacagtaatc 142062
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>emb|BX908726.21| Zebrafish DNA sequence from clone DKEY-74I2 in linkage group 22,
             complete sequence
          Length = 180599

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    atttacagtaatctgtcgtgg 43
             |||||||||||||||||||||
Sbjct: 66566 atttacagtaatctgtcgtgg 66546
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>emb|BX088549.9| Zebrafish DNA sequence from clone CH211-208G1 in linkage group 18,
             complete sequence
          Length = 195282

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    atttacagtaatctgtcgtgg 43
             |||||||||||||||||||||
Sbjct: 67608 atttacagtaatctgtcgtgg 67628
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>emb|AL954868.6| Zebrafish DNA sequence from clone CH211-254N4 in linkage group 8,
             complete sequence
          Length = 194224

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    atttacagtaatctgtcgtgg 43
             |||||||||||||||||||||
Sbjct: 22843 atttacagtaatctgtcgtgg 22863
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>emb|CT025748.16| Zebrafish DNA sequence from clone CH73-166N24 in linkage group 5,
              complete sequence
          Length = 117231

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 23     atttacagtaatctgtcgtgg 43
              |||||||||||||||||||||
Sbjct: 106688 atttacagtaatctgtcgtgg 106708
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>emb|AL928878.10| Zebrafish DNA sequence from clone BUSM1-148B8, complete sequence
          Length = 108197

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 23     atttacagtaatctgtcgtgg 43
              |||||||||||||||||||||
Sbjct: 105177 atttacagtaatctgtcgtgg 105197
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>emb|AL928637.7| Zebrafish DNA sequence from clone CH211-227I6, complete sequence
          Length = 163121

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    atttacagtaatctgtcgtgg 43
             |||||||||||||||||||||
Sbjct: 75224 atttacagtaatctgtcgtgg 75244
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>gb|AY067317.1| Schmidtea mediterranea clone HB.4.1f unknown mRNA sequence
          Length = 443

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 5  tttgtgataattgttgtaatt 25
          |||||||||||||||||||||
Sbjct: 59 tttgtgataattgttgtaatt 39
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>gb|AC137124.17| Mus musculus chromosome 3, clone RP24-229P11, complete sequence
          Length = 172081

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 272    ctccccatgaacttcccagc 291
              ||||||||||||||||||||
Sbjct: 146433 ctccccatgaacttcccagc 146452
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>gb|AC114342.12| Mus musculus chromosome 5, clone RP24-143H14, complete sequence
          Length = 171509

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   caagtgccctgtcacagtcc 272
             ||||||||||||||||||||
Sbjct: 11203 caagtgccctgtcacagtcc 11222
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 330     ctaccagaccagcgccagca 349
               ||||||||||||||||||||
Sbjct: 5017561 ctaccagaccagcgccagca 5017580
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 330     ctaccagaccagcgccagca 349
               ||||||||||||||||||||
Sbjct: 4934909 ctaccagaccagcgccagca 4934928
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 330     ctaccagaccagcgccagca 349
               ||||||||||||||||||||
Sbjct: 4735376 ctaccagaccagcgccagca 4735395
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>emb|CR933526.10| Zebrafish DNA sequence from clone DKEY-208P7 in linkage group 8,
             complete sequence
          Length = 100082

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 59    aatacaataaagtaaccaacaaat 82
             ||||||||||| ||||||||||||
Sbjct: 99778 aatacaataaaataaccaacaaat 99755
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>gb|AY325900.1| Pseudomonas syringae pv. maculicola RpoN gene, partial cds
          Length = 1057

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 ctaccagaccagcgccagca 349
           ||||||||||||||||||||
Sbjct: 405 ctaccagaccagcgccagca 424
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>emb|AL135940.11| Human DNA sequence from clone RP5-896L12 on chromosome 20 Contains STSs
              and GSSs, complete sequence
          Length = 105964

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 334    cagaccagcgccagcaccaagccc 357
              ||||||||| ||||||||||||||
Sbjct: 100155 cagaccagcaccagcaccaagccc 100178
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>gb|AC163089.3| Mus musculus chromosome 5, clone RP23-346P15, complete sequence
          Length = 197826

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   caagtgccctgtcacagtcc 272
             ||||||||||||||||||||
Sbjct: 92838 caagtgccctgtcacagtcc 92857
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>gb|AF538690.1| Pseudomonas alcaligenes sigma 54 (rpoN) gene, partial cds
          Length = 1490

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 ctaccagaccagcgccagca 349
           ||||||||||||||||||||
Sbjct: 329 ctaccagaccagcgccagca 348
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>emb|X16474.1|PPRPONS P.putida rpoN gene for sigma Factor
          Length = 2636

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 ctaccagaccagcgccagca 349
           ||||||||||||||||||||
Sbjct: 491 ctaccagaccagcgccagca 510
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>emb|AJ496594.1|PST496594 Pseudomonas stutzeri partial rpoN operon, strain A15101
          Length = 8072

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 330  ctaccagaccagcgccagca 349
            ||||||||||||||||||||
Sbjct: 4596 ctaccagaccagcgccagca 4615
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 330     ctaccagaccagcgccagca 349
               ||||||||||||||||||||
Sbjct: 1060037 ctaccagaccagcgccagca 1060018
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>gb|AE012110.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 18 of
            460 of the complete genome
          Length = 11320

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 300  ggccgctgcccacggcgcca 319
            ||||||||||||||||||||
Sbjct: 2477 ggccgctgcccacggcgcca 2496
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>gb|AF283815.1|AF283815 Pseudomonas syringae pv. glycinea transcription initiation factor
           rpoN (rpoN), putative sigma-54 modulation protein, and
           nitrogen regulatory IIA-like protein genes, complete
           cds; and hypothetical protein gene, partial cds
          Length = 3018

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 ctaccagaccagcgccagca 349
           ||||||||||||||||||||
Sbjct: 530 ctaccagaccagcgccagca 549
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>gb|AY341911.1| Pseudomonas fluorescens probable ATP-binding component of ABC
           transporter gene, partial cds; sigma factor RpoN (rpoN)
           and putative sigma-54 modulation protein genes, complete
           cds; and probable phosphotransferase enzyme II (ptsN)
           gene, partial cds
          Length = 2199

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 ctaccagaccagcgccagca 349
           ||||||||||||||||||||
Sbjct: 548 ctaccagaccagcgccagca 567
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    ggccgctgcccacggcgcca 319
              ||||||||||||||||||||
Sbjct: 189715 ggccgctgcccacggcgcca 189734
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>gb|AC008741.7| Homo sapiens chromosome 16 clone CTD-2547G23, complete sequence
          Length = 206295

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 333   ccagaccagcgccagcaccaagcc 356
             |||||||||| |||||||||||||
Sbjct: 32412 ccagaccagccccagcaccaagcc 32435
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>gb|AC104655.4| Homo sapiens BAC clone RP11-383P6 from 2, complete sequence
          Length = 95616

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   aacagtggagctgctaccac 236
             ||||||||||||||||||||
Sbjct: 87779 aacagtggagctgctaccac 87760
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>gb|AE004860.1| Pseudomonas aeruginosa PAO1, section 421 of 529 of the complete
            genome
          Length = 11340

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 330  ctaccagaccagcgccagca 349
            ||||||||||||||||||||
Sbjct: 4135 ctaccagaccagcgccagca 4154
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>gb|AF199600.1|AF199600 Pseudomonas syringae pv. maculicola alternative sigma factor RpoN
           (rpoN) gene, complete cds
          Length = 1770

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 ctaccagaccagcgccagca 349
           ||||||||||||||||||||
Sbjct: 575 ctaccagaccagcgccagca 594
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>emb|BX120008.9| Zebrafish DNA sequence from clone CH211-215G18 in linkage group 14,
             complete sequence
          Length = 221928

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    aattgttgtaatttacagta 32
             ||||||||||||||||||||
Sbjct: 30115 aattgttgtaatttacagta 30096
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 330     ctaccagaccagcgccagca 349
               ||||||||||||||||||||
Sbjct: 1147277 ctaccagaccagcgccagca 1147258
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 330     ctaccagaccagcgccagca 349
               ||||||||||||||||||||
Sbjct: 1095726 ctaccagaccagcgccagca 1095707
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>emb|AL928882.10| Mouse DNA sequence from clone RP23-281I20 on chromosome 2, complete
            sequence
          Length = 147002

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 451  cgtgctgccaattaccccagcctc 474
            ||||||||||||| ||||||||||
Sbjct: 3999 cgtgctgccaatttccccagcctc 3976
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>gb|M24916.1|PSENTRAA P.putida sigma factor (ntrA) gene, complete cds
          Length = 2756

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 ctaccagaccagcgccagca 349
           ||||||||||||||||||||
Sbjct: 928 ctaccagaccagcgccagca 947
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>gb|L26916.1|PSERPON Pseudomonas aeruginosa (rpoN) gene, complete cds; ORF1, complete
           cds; ORF2, complete cds
          Length = 2663

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 ctaccagaccagcgccagca 349
           ||||||||||||||||||||
Sbjct: 517 ctaccagaccagcgccagca 536
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>dbj|D42111.1|TOBBY2 Tobacco mRNA
          Length = 1532

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 aatccaacacctgaaccaac 420
           ||||||||||||||||||||
Sbjct: 683 aatccaacacctgaaccaac 664


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,603,435
Number of Sequences: 3902068
Number of extensions: 3603435
Number of successful extensions: 77080
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76648
Number of HSP's gapped (non-prelim): 432
length of query: 474
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 452
effective length of database: 17,147,199,772
effective search space: 7750534296944
effective search space used: 7750534296944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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