ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23l12 |
|---|---|
| Clone Library Name | barley_pub |
>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID| domain-containing protein 1B) (Osa homolog 2) (hOsa2) (p250R) (BRG1-binding protein hELD/OSA1) (BRG1-associated factor 250b) (BAF250B) Length = 2236 Score = 35.8 bits (81), Expect = 0.14 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 3/106 (2%) Frame = -1 Query: 593 ASVSSSRRFSRGNLADSEMSSVGSPGRFSRGSLADPEMMASASTPGR---FNSTDRYYGD 423 A +SS ++ + +MS G G +SR AS S PG ++ ++ +G Sbjct: 813 AGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYSGVPSASYSGPGPGMGISANNQMHGQ 872 Query: 422 GYSRAYDMSPLQGAREMQFSSLDTYATNGGLSDMSPSKPWLYGHGG 285 G S+ PL M + + G +S M+PS P + GG Sbjct: 873 GPSQPCGAVPLG---RMPSAGMQNRPFPGNMSSMTPSSPGMSQQGG 915
>GP3_LYCES (P93218) Polygalacturonase non-catalytic subunit AroGP3 precursor| Length = 632 Score = 35.4 bits (80), Expect = 0.18 Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 1/141 (0%) Frame = -1 Query: 614 NLADLDMASVSSSRRFSRGNLADSEMSSVGSPGRFSRGSLADPEMMASASTPGR-FNSTD 438 N + + V+S RR+ R + D++ + G+PG +TP + FNS Sbjct: 143 NYTEEENFPVNSFRRYGRDSPHDNQFDNYGAPG---------------GNTPVQSFNSYS 187 Query: 437 RYYGDGYSRAYDMSPLQGAREMQFSSLDTYATNGGLSDMSPSKPWLYGHGGSANPSSMNL 258 G + + +P ++ F+S + T GG D YG+ G+A S Sbjct: 188 TNTPGGSGQFTNYAPGSNVPDLHFTSYSDHGT-GGEQDFKS-----YGNDGNAGQQSFKS 241 Query: 257 GSLSANGFPQQHHQLGDYSNL 195 NG Q G+ +N+ Sbjct: 242 YGKDGNGADSQFTTYGNNTNV 262
>SER2_GALME (O96615) Sericin-2 (Silk gum protein 2) (Fragment)| Length = 220 Score = 35.0 bits (79), Expect = 0.24 Identities = 48/189 (25%), Positives = 78/189 (41%) Frame = -1 Query: 728 NIADSEMASVSSLGRFSRGNIADSEMASVSSPGRFSRGNLADLDMASVSSSRRFSRGNLA 549 N + ++ +S G S N + S ++ +S SR N + ++ SSS S GN + Sbjct: 14 NNSSGSSSTNNSSGSSSTNNASGSSSSNNTSGS--SRNNSSGSSSSNNSSSGS-SAGNSS 70 Query: 548 DSEMSSVGSPGRFSRGSLADPEMMASASTPGRFNSTDRYYGDGYSRAYDMSPLQGAREMQ 369 S SS S G GSL+ +S+S +S+ R DG S + S A + Sbjct: 71 GS--SSSNSSGSSGIGSLSRNSSSSSSSQAAGSSSSRRVSADGSSSSSSASN-SAAAQNS 127 Query: 368 FSSLDTYATNGGLSDMSPSKPWLYGHGGSANPSSMNLGSLSANGFPQQHHQLGDYSNLVS 189 SS +T +G ++ S S +A S+ ++A+G SN S Sbjct: 128 ASSSETINADGSENESSSSS------SSAAQNSATRSQVINADGSQSSSSSSSSASNQAS 181 Query: 188 GLNGVSAAA 162 + S +A Sbjct: 182 ATSSSSVSA 190
>IER5_MOUSE (O89113) Immediate early response gene 5 protein| Length = 308 Score = 34.7 bits (78), Expect = 0.31 Identities = 36/119 (30%), Positives = 44/119 (36%), Gaps = 28/119 (23%) Frame = +2 Query: 149 PGGDTRPQRHRSAHSPGCCSPPAGGVVAGTH--LRSTIRDSSTTDW-QSRHVRTAKASRG 319 P +PQR H+PG S VAG+ LR DS+ W + R A + G Sbjct: 100 PQPQPQPQRPSVCHTPGAGSSEPVAAVAGSGEALRGGEEDSAAAAWGRVERPRAASSGGG 159 Query: 320 S--CQTGHRWWRM---CP------ARRTASPSPP--------------GEGSCRRPSST 421 S C G R R CP + SP+PP G SC P ST Sbjct: 160 SDACPEGPRAVRRPCGCPPAVEERSSEDGSPAPPAPCPRKRGAAGVGGGRASCSAPGST 218
>MPIP3_HUMAN (P30307) M-phase inducer phosphatase 3 (EC 3.1.3.48) (Dual| specificity phosphatase Cdc25C) Length = 473 Score = 33.5 bits (75), Expect = 0.70 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = -1 Query: 641 SSPGRFSRGNLADLDMASVSSSRRFSRGNLADSEMSSVGSP 519 S+P RG+ M S S+++ GNL DSEM +GSP Sbjct: 129 STPNGLDRGHRKRDAMCSSSANKENDNGNLVDSEMKYLGSP 169
>SERI1_BOMMO (P07856) Sericin 1 precursor (Silk gum protein)| Length = 1186 Score = 33.1 bits (74), Expect = 0.91 Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 8/172 (4%) Frame = -1 Query: 731 GNIADSEMASVSSLGRFSRGNIADSEMASVSSPGRFSRGNLADLDMASVSSSRRFSRGNL 552 G +DS SVSS G S + + S +S G + G +D SVSS+ S + Sbjct: 848 GYSSDSRDGSVSSTGSSSNTDASTDLAGSSTSGGSSTYGYSSDCGDGSVSSTGSSSNTD- 906 Query: 551 ADSEMSSVGSPGRFSRGSLADPEMMASASTPGRFNSTD--------RYYGDGYSRAYDMS 396 A ++++ + G S + S S+ G ++TD G + Y + Sbjct: 907 ASTDLAGSSTSGGSSTYGYSSDSRDGSVSSTGSSSNTDASTDLAGSSTSGGSSTYGYSSN 966 Query: 395 PLQGAREMQFSSLDTYATNGGLSDMSPSKPWLYGHGGSANPSSMNLGSLSAN 240 G+ SS +T A+ + YG+ S S+ S+N Sbjct: 967 SRDGSVSSTGSSSNTDASTDLTGSSTSGGSSTYGYSSSNRDGSVLATGSSSN 1018 Score = 30.0 bits (66), Expect = 7.7 Identities = 43/172 (25%), Positives = 65/172 (37%), Gaps = 8/172 (4%) Frame = -1 Query: 731 GNIADSEMASVSSLGRFSRGNIADSEMASVSSPGRFSRG---NLADLDMASV-SSSRRFS 564 G ++S SVSS G S + + S +S G + G N D ++S SSS S Sbjct: 734 GYSSNSRDGSVSSTGSSSNTDSNSNSAGSSTSGGSSTYGYSSNSRDGSVSSTGSSSNTDS 793 Query: 563 RGNLADSEMSSVGSPGRFSRGSLADPEMMASASTPGRFNSTD----RYYGDGYSRAYDMS 396 N A S S S +S S D + ++ S+ STD G + Y Sbjct: 794 NSNSAGSSTSGGSSTYGYSSNS-RDGSVSSTGSSSNTDASTDLTGSSTSGGSSTYGYSSD 852 Query: 395 PLQGAREMQFSSLDTYATNGGLSDMSPSKPWLYGHGGSANPSSMNLGSLSAN 240 G+ SS +T A+ + YG+ S++ S+N Sbjct: 853 SRDGSVSSTGSSSNTDASTDLAGSSTSGGSSTYGYSSDCGDGSVSSTGSSSN 904
>SON_MOUSE (Q9QX47) SON protein| Length = 2404 Score = 32.3 bits (72), Expect = 1.6 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 2/111 (1%) Frame = -1 Query: 716 SEMASVSSLGRFSRGNIADSEMASVSSPGRFSRGNLADLDMASVSSSRRF-SRGNLAD-S 543 S MA S + + R ++ E + +S +AD M S+ + R S + AD S Sbjct: 1006 SPMAERSMMSAYERSMMSAYERSMMSP--------MADRSMMSMGADRSMMSSYSAADRS 1057 Query: 542 EMSSVGSPGRFSRGSLADPEMMASASTPGRFNSTDRYYGDGYSRAYDMSPL 390 MSS + R S D MM+ A+ +S Y D Y+ AY + PL Sbjct: 1058 MMSSYSAADRSMMSSYTDRSMMSMAA-----DSYTDSYTDSYTEAYMVPPL 1103
>GP2_LYCES (P93217) Polygalacturonase non-catalytic subunit AroGP2 precursor| Length = 629 Score = 32.3 bits (72), Expect = 1.6 Identities = 48/180 (26%), Positives = 67/180 (37%), Gaps = 28/180 (15%) Frame = -1 Query: 593 ASVSSSRRFSRGNLADSEMSSVGSPGRFSRGSLADPEMMASASTPGRFNSTDRY-----Y 429 ASV+S RR+ RG+ D++ + G S S +TPG Y Sbjct: 148 ASVNSFRRYGRGSPRDNKFDNYAPDGNVIDQSFNS----YSTNTPGGSGQFTNYAPNTNV 203 Query: 428 GDGYSRAYDMSPLQGAREMQF---------SSLDTYATNGGLSDMSPSKPWLYG------ 294 D AY G +E + S +Y NG +D SK YG Sbjct: 204 PDLRFTAYSDQGTGGEQEFKTYLEQGNSGGQSFKSYGKNGNGAD---SKFTSYGNETNVA 260 Query: 293 ------HGGSANPSSMNLGSLSANGFPQQHHQLGDYSNLVSGLNGVSA--AAYRRQANNG 138 +G +AN + N S S NG Q+ ++ N G NG S YR ++N G Sbjct: 261 ASTFKNYGQNANGENQNFTSYSTNGNNPQN----NFKNYGVGGNGPSETFTNYRDESNVG 316
>GP1_LYCES (Q40161) Polygalacturonase-1 non-catalytic beta subunit precursor| (AroGP1) (Polygalacturonase converter) (PG converter) Length = 630 Score = 32.3 bits (72), Expect = 1.6 Identities = 48/209 (22%), Positives = 79/209 (37%), Gaps = 12/209 (5%) Frame = -1 Query: 728 NIADSEMASVSSLGRFSRGNIADSEMASVSSPGRFSRGNLADLDMASVSSSRRFSRGNLA 549 N ++ E V+S R+ RG+ D++ + +S G N+ D S S+S Sbjct: 142 NYSEGENIPVNSFRRYGRGSPRDNKFDNYASDG-----NVIDQSFNSYSTS--------- 187 Query: 548 DSEMSSVGSPGRFSR--GSLADPEM-MASASTPG-------RFNSTDRYYGDGYSRAYDM 399 + G G+F+ + DP + S S G S + GD Y ++Y Sbjct: 188 -----TAGGSGKFTNYAANANDPNLHFTSYSDQGTGGVQKFTIYSQEANAGDQYFKSYGK 242 Query: 398 SPLQGAREMQFSSLDTYATNGGLSDMSPSKPWLYGHGGSANPSSMNLGSLSANGFPQQHH 219 + E DT ++ +G +AN S NG ++H Sbjct: 243 NGNGANGEFVSYGNDTNVIGSTFTN----------YGQTANGGDQKFTSYGFNGNVPENH 292 Query: 218 QLGDYSNLVSGLNGVSAA--AYRRQANNG 138 ++N +G NG S +YR Q+N G Sbjct: 293 ----FTNYGAGGNGPSETFNSYRDQSNVG 317
>SRP40_YEAST (P32583) Suppressor protein SRP40| Length = 406 Score = 32.0 bits (71), Expect = 2.0 Identities = 38/161 (23%), Positives = 67/161 (41%) Frame = -1 Query: 722 ADSEMASVSSLGRFSRGNIADSEMASVSSPGRFSRGNLADLDMASVSSSRRFSRGNLADS 543 + S +S SS S + S +S SS + +D + +S SSS S + +DS Sbjct: 33 SSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSSSSSSSSDS 92 Query: 542 EMSSVGSPGRFSRGSLADPEMMASASTPGRFNSTDRYYGDGYSRAYDMSPLQGAREMQFS 363 E SS S GS +S+S+ +S++ D + S + A+E + + Sbjct: 93 ESSSESDSS--SSGS------SSSSSSSSDESSSESESEDETKKRARESDNEDAKETKKA 144 Query: 362 SLDTYATNGGLSDMSPSKPWLYGHGGSANPSSMNLGSLSAN 240 + +++ S S S GS + S + S S++ Sbjct: 145 KTEPESSSSSESSSSGSSSSSESESGSESDSDSSSSSSSSS 185 Score = 31.6 bits (70), Expect = 2.7 Identities = 40/157 (25%), Positives = 60/157 (38%), Gaps = 1/157 (0%) Frame = -1 Query: 713 EMASVSSLGRFSRGNIADSEMASVSSPGRFSRGNLADLDMASVSSSRRFSRGNLADSEMS 534 E +S SS S + + S +S SS G S + +S SSS + +DSE S Sbjct: 23 EKSSSSSSSSSSSSSSSSSSSSSSSSSGESSSSS------SSSSSSSSSDSSDSSDSESS 76 Query: 533 SVGSPGRFSRGSLADPEMMA-SASTPGRFNSTDRYYGDGYSRAYDMSPLQGAREMQFSSL 357 S S S S +D E + S S+ +S+ D S + R + + Sbjct: 77 SSSSSSSSSSSSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESEDETKKRARESDNE 136 Query: 356 DTYATNGGLSDMSPSKPWLYGHGGSANPSSMNLGSLS 246 D T ++ S GS++ S GS S Sbjct: 137 DAKETKKAKTEPESSSSSESSSSGSSSSSESESGSES 173 Score = 30.4 bits (67), Expect = 5.9 Identities = 37/161 (22%), Positives = 63/161 (39%) Frame = -1 Query: 722 ADSEMASVSSLGRFSRGNIADSEMASVSSPGRFSRGNLADLDMASVSSSRRFSRGNLADS 543 ++S + SS G+ +DS+ +S SS S +D + S SSS S + +DS Sbjct: 154 SESSSSGSSSSSESESGSESDSDSSSSSSSSSDSE---SDSESDSQSSSSSSSSDSSSDS 210 Query: 542 EMSSVGSPGRFSRGSLADPEMMASASTPGRFNSTDRYYGDGYSRAYDMSPLQGAREMQFS 363 + SS S S + S S + +D S + D S + S Sbjct: 211 DSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDSSSSSDSSS-DESTSSDSS 269 Query: 362 SLDTYATNGGLSDMSPSKPWLYGHGGSANPSSMNLGSLSAN 240 D+ + +G S++ + P+S N + SA+ Sbjct: 270 DSDSDSDSGSSSELETKEATADESKAEETPASSNESTPSAS 310
>AF9_NEUCR (Q7RZK7) Protein AF-9 homolog| Length = 309 Score = 32.0 bits (71), Expect = 2.0 Identities = 19/66 (28%), Positives = 30/66 (45%) Frame = +1 Query: 478 IISGSARLPLLNRPGLPTEDISESAKFPLLNRLELLTEAISKSAKLPLLNRPGLLTEAIS 657 ++ SA +PL+NRPG P +E + L +L + + K L + L + Sbjct: 244 VLERSAMIPLVNRPGQPFSRETEQLEIQKLKEAKLKVDEMKKQMMEELEKKQKRLEALRA 303 Query: 658 ESAMLP 675 ESA P Sbjct: 304 ESAKAP 309
>CNC_DROME (P20482) Segmentation protein cap'n'collar| Length = 1383 Score = 31.2 bits (69), Expect = 3.5 Identities = 19/47 (40%), Positives = 24/47 (51%) Frame = -1 Query: 338 GGLSDMSPSKPWLYGHGGSANPSSMNLGSLSANGFPQQHHQLGDYSN 198 GG+SDMSP G+ A+PS+ A G P QH Q G +N Sbjct: 700 GGVSDMSPYPHHYPGYSYQASPSN------GAPGTPGQHGQYGSGAN 740
>Y308_MYCPN (P75472) Hypothetical protein MPN308 (F10_orf565)| Length = 565 Score = 31.2 bits (69), Expect = 3.5 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = +1 Query: 235 NPFALNDPRFIDDGLAEPPCPYSQGFEGLMSDRPPLVAYV 354 N FAL PRF++D LA+ P+ + +G ++ P+V + Sbjct: 332 NGFALWAPRFVEDLLAQGDLPFWKQVQGRLNPNKPVVGVI 371
>YNJC_ECOLI (P76224) Inner membrane ABC transporter permease protein ynjC| Length = 511 Score = 30.8 bits (68), Expect = 4.5 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 13/86 (15%) Frame = -2 Query: 709 WLLSAVSGGLAEAT*QIQKWL--RLVVLDGLAEATWQIWIWLL------SVVRGGLAEGT 554 W+L+AV +KWL +++VLD L + WQ WLL ++ LA Sbjct: 149 WILAAVLS---------EKWLLQQVIVLDSLGYSRWQCLNWLLLPSVAPALAMAMLAIVA 199 Query: 553 WQIPRCLLSAVLG-----GLAEAAWQ 491 W + ++ +LG LA +WQ Sbjct: 200 WSLSVVDVAIILGPGNPPTLAVISWQ 225
>H1T_HUMAN (P22492) Histone H1t (Testicular H1 histone)| Length = 206 Score = 30.8 bits (68), Expect = 4.5 Identities = 19/50 (38%), Positives = 26/50 (52%) Frame = +1 Query: 457 PGVLAEAIISGSARLPLLNRPGLPTEDISESAKFPLLNRLELLTEAISKS 606 P A A ++ +LP R P IS S K P L+ +L+TEA+S S Sbjct: 5 PAASASAGVAAMEKLPTKKRGRKPAGLISASRKVPNLSVSKLITEALSVS 54
>HGL2_ARATH (P46607) Homeobox protein GLABRA2 (Homeobox-leucine zipper protein| ATHB-10) (HD-ZIP protein ATHB-10) Length = 745 Score = 30.8 bits (68), Expect = 4.5 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +2 Query: 107 AAASYHRITSVRCSPGGDTRPQRHRSAHSPGCCSPPAGGVVAGT 238 AA+SYH+ T + G D R ++ H PG P G +V + Sbjct: 526 AASSYHQWTKITTKTGQDMRVSSRKNLHDPG---EPTGVIVCAS 566
>SYFB_CAUCR (Q9A9E5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 799 Score = 30.8 bits (68), Expect = 4.5 Identities = 20/66 (30%), Positives = 28/66 (42%) Frame = +3 Query: 387 LERAHVVGPRVPIAIVPVSGIKPTGSAGRSHHLRICQAASAKPPRTADRRHLGICQVPSA 566 LE HV+ P +A V I + L++CQ T D R +C P+A Sbjct: 30 LEVEHVIDPATKLAPFTVCKIVEAARHPNADRLQVCQV------DTVDGRKEIVCGAPNA 83 Query: 567 KPPRTT 584 +P TT Sbjct: 84 RPGLTT 89
>ULK2_HUMAN (Q8IYT8) Serine/threonine-protein kinase ULK2 (EC 2.7.11.1)| (Unc-51-like kinase 2) Length = 1036 Score = 30.8 bits (68), Expect = 4.5 Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 1/100 (1%) Frame = -1 Query: 659 SEMASVSSPGRFSRGNLADLDMASVSSSRRFSRGNLADSEMS-SVGSPGRFSRGSLADPE 483 SE A + P + + ++ S +SS G+ + + S SP F R P Sbjct: 396 SETAPIPVPTQIRNYQRIEQNLTSTASSGTNVHGSPRSAVVRRSNTSPMGFLRPGSCSPV 455 Query: 482 MMASASTPGRFNSTDRYYGDGYSRAYDMSPLQGAREMQFS 363 +A T GR ST G SR Y SPL G QFS Sbjct: 456 PADTAQTVGRRLST------GSSRPYSPSPLVGTIPEQFS 489
>MAST1_RAT (Q810W7) Microtubule-associated serine/threonine-protein kinase 1 (EC| 2.7.11.1) (Syntrophin-associated serine/threonine-protein kinase) Length = 1570 Score = 30.8 bits (68), Expect = 4.5 Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 22/117 (18%) Frame = -1 Query: 467 STPGRFNSTDRYY-GDGYSRAYDMSP----------LQGAREMQFS---SLDTYATNGG- 333 STPG +T+R + GD + D P L+ AR Q S S++ + G Sbjct: 850 STPGEPEATERSHPGDFCPPSKDGDPSGPRATNDLVLRRARHQQLSGDLSVEKRPSRTGG 909 Query: 332 -------LSDMSPSKPWLYGHGGSANPSSMNLGSLSANGFPQQHHQLGDYSNLVSGL 183 + +S P + HGGS S M+ SLS+N + DYS VSGL Sbjct: 910 KVIKSASATALSVMIPAVDPHGGSPLASPMSPRSLSSNPSSRDSSPSRDYSPAVSGL 966
>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)| Length = 2442 Score = 30.4 bits (67), Expect = 5.9 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = -1 Query: 341 NGGLSDMSPSKPWLYGHGGSAN--PSSMNLGSLSANG 237 N G+ ++S S P G GG A P+S N+ SLSA G Sbjct: 83 NPGIGNVSASSPVQQGLGGQAQGQPNSANMASLSAMG 119
>CBID_GEOSL (P61985) Putative cobalt-precorrin-6A synthase [deacetylating] (EC| 2.1.1.-) Length = 362 Score = 30.4 bits (67), Expect = 5.9 Identities = 21/74 (28%), Positives = 37/74 (50%) Frame = +1 Query: 436 RSVELNRPGVLAEAIISGSARLPLLNRPGLPTEDISESAKFPLLNRLELLTEAISKSAKL 615 R LNRPG ++G + + +PGL + E A P+ + ++TEA+ A+ Sbjct: 85 RREALNRPGARTMVFVTGGRGVGTITKPGLAV-PVGEPAINPV--PMRMITEAV--KAEF 139 Query: 616 PLLNRPGLLTEAIS 657 ++ P +LT +S Sbjct: 140 SVVCLPQILTVTVS 153
>PK1L1_MOUSE (Q8R526) Polycystic kidney disease 1-like 1 protein| (Polycystin-1L1) (Fragment) Length = 531 Score = 30.4 bits (67), Expect = 5.9 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 9/97 (9%) Frame = +2 Query: 296 RTAKASRGSCQTGHRWWRMCPARRTASPSPPGEGSCRRPSSTH--RHSTGQWN*TDRECW 469 R +K +RG Q +W P R + +P G S RP S H H T + W Sbjct: 292 RCSKEARGDMQASTQW----PLRGVKTETPQGHDSSGRPDSRHPSPHPTSDLLPWTDQAW 347 Query: 470 QKPSSPDLPGCLC*TAQDC-------RQKTSRNLPSS 559 + +S C + C R+K+ + PSS Sbjct: 348 RIAASSSAVVCSPFPMEACSHKHHDLREKSHYSPPSS 384
>CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein) (PPAR-alpha-interacting complex protein 320 kDa) Length = 2885 Score = 30.4 bits (67), Expect = 5.9 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 2/113 (1%) Frame = -1 Query: 665 ADSEMASVSSPGRFSRGNLADLDMASVSSSRRFSRGNLADSEMSSVGSPGRFSRGSLADP 486 +DS+ A S R S + S SSS SR + S SS S S S + Sbjct: 2133 SDSDSARSSCSSRSSSSS-------SSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSS 2185 Query: 485 EMMASASTPGRFNSTD--RYYGDGYSRAYDMSPLQGAREMQFSSLDTYATNGG 333 +S+S+ + D + G + +AYD + Q + D++ N G Sbjct: 2186 SSSSSSSSEESDSEEDVQKREGTPHRKAYDEESVASLSTTQDETQDSFQANNG 2238
>ZBP1_HUMAN (Q9H171) Z-DNA-binding protein 1 (Tumor stroma and activated| macrophage protein DLM-1) Length = 429 Score = 30.4 bits (67), Expect = 5.9 Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 3/124 (2%) Frame = +3 Query: 294 SVQPRLRGAHVRQATVGGVCVQRGELHLP--RPLERAHVVGPRVPI-AIVPVSGIKPTGS 464 S+ R++ H + + GV G H+P P A GP A +P G P G Sbjct: 259 SILRRVQLGHSNEMRLHGV-PSEGPAHIPPGSPPVSATAAGPEASFEARIPSPGTHPEGE 317 Query: 465 AGRSHHLRICQAASAKPPRTADRRHLGICQVPSAKPPRTTDRSHIQICQVASAKPSRTTN 644 A + H++ C A T + A P + + A +P+ T + Sbjct: 318 AAQRIHMKSCFLEDA----TIGNSNKMSISPGVAGPGGVAGSGEGEPGEDAGRRPADTQS 373 Query: 645 RSHF 656 RSHF Sbjct: 374 RSHF 377
>DHSC_PARDE (Q59659) Succinate dehydrogenase cytochrome b556 subunit| (Cytochrome b-556) Length = 130 Score = 30.0 bits (66), Expect = 7.7 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%) Frame = -2 Query: 709 WLLSAVS--GGLAEAT*QIQKWLRLVVLDGLAEATWQIWIWLLSVVR 575 WL++AV+ G A A ++ WL ++L G + W +W LL+ +R Sbjct: 47 WLVAAVTSPGAFACADWVVRSWLGFIILTG---SMWALWYHLLAGLR 90
>NU5M_LOCMI (Q36428) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 572 Score = 30.0 bits (66), Expect = 7.7 Identities = 19/62 (30%), Positives = 29/62 (46%) Frame = +1 Query: 58 HLLQQALFSSTVRLYTGCSIISSHYQRPLFAWRRYAAAETPFSPLTRLL*SPSWWCCCGN 237 HLL ALF + + + G I + + + R+ + F PLT + + S C CG Sbjct: 295 HLLTHALFKALLFMCAGSMIHNLRDSQDI----RFMGSIIHFMPLTSICFNVSSLCLCGM 350 Query: 238 PF 243 PF Sbjct: 351 PF 352
>UCP3_SCHPO (O74345) UBA domain-containing protein 3| Length = 601 Score = 30.0 bits (66), Expect = 7.7 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 3/105 (2%) Frame = -1 Query: 488 PEMMASAST---PGRFNSTDRYYGDGYSRAYDMSPLQGAREMQFSSLDTYATNGGLSDMS 318 P M S +T P + Y + S + +PLQ AR + Y TN +S S Sbjct: 306 PSSMGSEATLNMPSTYGIDSNLYTNSNSSSIVQNPLQPARTGPAAINYNYTTNYSVSSPS 365 Query: 317 PSKPWLYGHGGSANPSSMNLGSLSANGFPQQHHQLGDYSNLVSGL 183 + P+ S+ N + + G+P + + Y N G+ Sbjct: 366 VTNPFF-----DVGSSTQNASLMGSTGYPSSANNV-YYENSYQGV 404
>STR1_SCHPO (O74395) Siderophore iron transporter 1| Length = 612 Score = 30.0 bits (66), Expect = 7.7 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Frame = -2 Query: 721 QIRKWLLSAVSGGLAEAT*QIQKWLRLVVLDGLAEATWQIWIWLLSVVRGGLAEGTWQIP 542 Q R W A+ G L ++ K L ++ GL T + + LLS+ G W Sbjct: 273 QFRAWREGALKGTLTINPVELFKKLDII---GLILMTAGLALVLLSISLASYDTGKWSDA 329 Query: 541 RCLLSAVLGGLAEAAWQIRR*WL--LPALPVGLI 446 + ++ ++GGL A+ + ++ PALP L+ Sbjct: 330 KFIVMIIIGGLCLIAFVLYEIFVASFPALPFRLM 363
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 30.0 bits (66), Expect = 7.7 Identities = 34/106 (32%), Positives = 36/106 (33%), Gaps = 10/106 (9%) Frame = +2 Query: 323 CQTGHRWWRMCPARRTASPSPPGEGSCRRPSSTHRH-STGQWN*TDREC----WQKPSSP 487 CQ GH + C R + P EGS P S H G REC W P Sbjct: 2054 CQEGHFGFNGCGGCRPCACGPAAEGSECHPQSGQCHCRPGTMGPQCRECAPGYWGLPEQ- 2112 Query: 488 DLPGCLC*TAQDCRQKTSR-NLPSSL----C*TASNY*QKPYPNLP 610 C C C T R N P L C T S Q P P P Sbjct: 2113 GCRRCQC-PGGRCDPHTGRCNCPPGLSGERCDTCSQQHQVPVPGGP 2157
>GPV_RAT (O08770) Platelet glycoprotein V precursor (GPV) (CD42D antigen)| Length = 567 Score = 30.0 bits (66), Expect = 7.7 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +2 Query: 332 GHRWWRMCPARRTASPSPPGEGSCRRPSSTHRHSTGQ 442 G +W CP+ R P PP E + + P T R ++ Q Sbjct: 468 GDQW---CPSSRGLPPDPPTENALKAPDPTQRPNSSQ 501 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 122,946,802 Number of Sequences: 219361 Number of extensions: 3113252 Number of successful extensions: 9514 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 8633 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9490 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7649585595 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
