ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23l12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475668.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2205 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 300 cagccaaggcttcgaggggctcatgtcagacaggcca 336 |||||||||||| || || |||||||||||||||||| Sbjct: 2064 cagccaaggctttgatggactcatgtcagacaggcca 2028
>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17, complete sequence Length = 139829 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 300 cagccaaggcttcgaggggctcatgtcagacaggcca 336 |||||||||||| || || |||||||||||||||||| Sbjct: 54910 cagccaaggctttgatggactcatgtcagacaggcca 54874 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 68 aacaagcattattttcttccactgtaagactgtatacaggc 108 ||||||||||||||| || | || |||||||||||||||| Sbjct: 55101 aacaagcattattttttttgattgcaagactgtatacaggc 55061
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 300 cagccaaggcttcgaggggctcatgtcagacaggcca 336 |||||||||||| || || |||||||||||||||||| Sbjct: 24986057 cagccaaggctttgatggactcatgtcagacaggcca 24986021 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 68 aacaagcattattttcttccactgtaagactgtatacaggc 108 ||||||||||||||| || | || |||||||||||||||| Sbjct: 24986248 aacaagcattattttttttgattgcaagactgtatacaggc 24986208
>dbj|AK105718.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-F09, full insert sequence Length = 2478 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 300 cagccaaggcttcgaggggctcatgtcagacaggcca 336 |||||||||||| || || |||||||||||||||||| Sbjct: 2141 cagccaaggctttgatggactcatgtcagacaggcca 2105 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 68 aacaagcattattttcttccactgtaagactgtatacaggc 108 ||||||||||||||| || | || |||||||||||||||| Sbjct: 2332 aacaagcattattttttttgattgcaagactgtatacaggc 2292
>emb|AM039520.1| Enterobacter nickellidurans ORF 1 and 2 (partial) for hipothetical inner membrane and hypothetical protein Length = 1062 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 468 ggcagaagccatcatctccggatctgc 494 ||||||||| ||||||||||||||||| Sbjct: 722 ggcagaagcaatcatctccggatctgc 696
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Minus Query: 210 ccccagctggtggtgttgttgcggga 235 |||||||||||||||||| ||||||| Sbjct: 772795 ccccagctggtggtgttggtgcggga 772770
>emb|AL160406.8| Human DNA sequence from clone RP3-493L23 on chromosome 6, complete sequence Length = 60901 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 ctgtaagactgtatacaggct 109 ||||||||||||||||||||| Sbjct: 57568 ctgtaagactgtatacaggct 57548
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 300 cagccaaggcttcgaggggct 320 ||||||||||||||||||||| Sbjct: 1735528 cagccaaggcttcgaggggct 1735548
>dbj|AK053495.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130102O08 product:unclassifiable, full insert sequence Length = 2000 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 ccccagctggtggtgttgttg 230 ||||||||||||||||||||| Sbjct: 171 ccccagctggtggtgttgttg 151
>gb|AC166328.4| Mus musculus BAC clone RP23-31H5 from chromosome 5, complete sequence Length = 215189 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 210 ccccagctggtggtgttgttg 230 ||||||||||||||||||||| Sbjct: 101899 ccccagctggtggtgttgttg 101919 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,072,977 Number of Sequences: 3902068 Number of extensions: 5072977 Number of successful extensions: 87289 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87192 Number of HSP's gapped (non-prelim): 97 length of query: 734 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 711 effective length of database: 17,143,297,704 effective search space: 12188884667544 effective search space used: 12188884667544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
