ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 42 0.93
2emb|AL163636.7|CNS01RIK Human chromosome 14 DNA sequence BAC R-9... 42 0.93
3ref|XM_691600.1| PREDICTED: Danio rerio similar to spinster-like... 40 3.7
4emb|BX005059.4| Zebrafish DNA sequence from clone CH211-138A6, c... 40 3.7

>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 85      acggccacctcctggctgtcc 105
               |||||||||||||||||||||
Sbjct: 2964335 acggccacctcctggctgtcc 2964315



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>emb|AL163636.7|CNS01RIK Human chromosome 14 DNA sequence BAC R-903H12 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 202337

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 123    attttatccagattgacagaa 143
              |||||||||||||||||||||
Sbjct: 128769 attttatccagattgacagaa 128789



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>ref|XM_691600.1| PREDICTED: Danio rerio similar to spinster-like (LOC568280), mRNA
          Length = 1179

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   ctcatccatctctccgacta 26
           ||||||||||||||||||||
Sbjct: 198 ctcatccatctctccgacta 217



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>emb|BX005059.4| Zebrafish DNA sequence from clone CH211-138A6, complete sequence
          Length = 194603

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      ctcatccatctctccgacta 26
              ||||||||||||||||||||
Sbjct: 107501 ctcatccatctctccgacta 107520


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,374,890
Number of Sequences: 3902068
Number of extensions: 2374890
Number of successful extensions: 40868
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40858
Number of HSP's gapped (non-prelim): 10
length of query: 281
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 259
effective length of database: 17,147,199,772
effective search space: 4441124740948
effective search space used: 4441124740948
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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