ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23l10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY108668.1| Zea mays PCO064352 mRNA sequence 238 1e-59
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 202 8e-49
3dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic D... 202 8e-49
4dbj|AK065464.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 8e-49
5ref|XM_473875.1| Oryza sativa (japonica cultivar-group), predic... 100 8e-18
6emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4,... 100 8e-18
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 100 8e-18
8emb|AJ427980.1|OSA427980 Oryza sativa HAK11 gene for putative po... 100 8e-18
9dbj|AK072123.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 8e-18
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
11dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
12emb|AJ427981.1|OSA427981 Oryza sativa HAK12 gene for putative po... 66 1e-07
13dbj|AK069377.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
14ref|NM_102850.2| Arabidopsis thaliana KUP10; potassium ion trans... 62 2e-06
15gb|AC004793.2|F28K20 Arabidopsis thaliana chromosome 1 BAC F28K2... 62 2e-06
16dbj|AK101722.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
17emb|AJ234614.1|HVU234614 Hordeum vulgare genomic DNA fragment; c... 44 0.43
18gb|CP000088.1| Thermobifida fusca YX, complete genome 42 1.7
19gb|BC031618.1| Homo sapiens chromosome 10 open reading frame 30,... 40 6.7
20gb|AC135601.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.7
21gb|AC135596.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.7
22ref|NG_000004.2| Homo sapiens cytochrome P450, family 3, subfami... 40 6.7
23gb|AC145881.4| Pan troglodytes BAC clone RP43-7E18 from chromoso... 40 6.7
24gb|AY502075.1| Rhodococcus sp. DK17 plasmid pDK2, partial sequence 40 6.7
25gb|AC005020.5| Homo sapiens BAC clone GS1-259H13 from 7, complet... 40 6.7
26gb|AC124510.4| Mus musculus BAC clone RP23-434A8 from chromosome... 40 6.7
27emb|AL590677.7| Human DNA sequence from clone RP11-214D15 on chr... 40 6.7
28emb|AJ854486.1| Human adenovirus type 9 complete genome 40 6.7
29gb|AY875648.1| Human adenovirus type 46, complete genome 40 6.7
30gb|AF091066.1|AF091066 Callitrichine herpesvirus 3 isolate Anima... 40 6.7
31gb|AF091065.1|AF091065 Callitrichine herpesvirus 3 isolate Anima... 40 6.7
32gb|AF091063.1|AF091063 Callitrichine herpesvirus 3 isolate Anima... 40 6.7
33gb|AF091062.1|AF091062 Callitrichine herpesvirus 3 isolate Anima... 40 6.7
34dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
35dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
36dbj|AP002860.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
37dbj|AB107790.2| Rhodococcus sp. RHA1 bphB1, bphS, bphT for cis-b... 40 6.7
38dbj|AK108558.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.7
39ref|XM_308969.2| Anopheles gambiae str. PEST ENSANGP00000020148 ... 40 6.7
40gb|AC147245.3| Mus musculus BAC clone RP23-462E12 from 12, compl... 40 6.7
41gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.7
42gb|AF319782.2| Callitrichine herpesvirus 3 strain CJ0149, comple... 40 6.7
43dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7 
>gb|AY108668.1| Zea mays PCO064352 mRNA sequence
          Length = 1690

 Score =  238 bits (120), Expect = 1e-59
 Identities = 198/224 (88%)
 Strand = Plus / Minus

                                                                        
Query: 57   tacacatagaacacctgcccaacattcagcaggctctcatggggaacattgaagatggcg 116
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1509 tacacatagaacacctgcccaacattcagtaggctctcatggggaacattgaagatggcg 1450

                                                                        
Query: 117  ctgttctccctgcagatcttcctcaggaaggcgtagaggtagtcgatggcgagcttcttc 176
            ||||||||||||||||||||||| ||||| || || | ||| | ||| || | |||||| 
Sbjct: 1449 ctgttctccctgcagatcttcctaaggaaagcatacaagtaattgatagcaatcttcttg 1390

                                                                        
Query: 177  agcggccccgagtccctgcgagccctgatgatggtgttcccgaggatgtgcacgaccccg 236
            |    ||| || || ||||| ||||||||||  |||||||||||||||||||| ||||||
Sbjct: 1389 atgaaccctgaatctctgcgggccctgatgactgtgttcccgaggatgtgcaccaccccg 1330

                                                        
Query: 237  gcgtccctgcacgagttcaggaacgcgacctcgtcgcccacggt 280
            ||||||||||||| |||||||||||| | |||||||||||||||
Sbjct: 1329 gcgtccctgcacgcgttcaggaacgcaatctcgtcgcccacggt 1286
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  202 bits (102), Expect = 8e-49
 Identities = 189/218 (86%)
 Strand = Plus / Plus

                                                                            
Query: 57       tacacatagaacacctgcccaacattcagcaggctctcatggggaacattgaagatggcg 116
                ||||| ||||| |||||||||||||| |||| ||||||||| || |||||||||||||| 
Sbjct: 22066551 tacacgtagaaaacctgcccaacattgagcatgctctcatgaggcacattgaagatggca 22066610

                                                                            
Query: 117      ctgttctccctgcagatcttcctcaggaaggcgtagaggtagtcgatggcgagcttcttc 176
                ||||||||||||||||||||||||||||| || || | ||||| |||| | | |||||| 
Sbjct: 22066611 ctgttctccctgcagatcttcctcaggaaagcatacatgtagttgatgacaatcttcttg 22066670

                                                                            
Query: 177      agcggccccgagtccctgcgagccctgatgatggtgttcccgaggatgtgcacgaccccg 236
                |    ||| || ||||||||||| ||||| |  |||||||||||||||||||| ||||||
Sbjct: 22066671 acgaaccctgaatccctgcgagctctgatcaccgtgttcccgaggatgtgcaccaccccg 22066730

                                                      
Query: 237      gcgtccctgcacgagttcaggaacgcgacctcgtcgcc 274
                ||||||||||||| |||||||||||||| |||||||||
Sbjct: 22066731 gcgtccctgcacgcgttcaggaacgcgatctcgtcgcc 22066768
to top
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0635G10
          Length = 146728

 Score =  202 bits (102), Expect = 8e-49
 Identities = 189/218 (86%)
 Strand = Plus / Plus

                                                                          
Query: 57     tacacatagaacacctgcccaacattcagcaggctctcatggggaacattgaagatggcg 116
              ||||| ||||| |||||||||||||| |||| ||||||||| || |||||||||||||| 
Sbjct: 108615 tacacgtagaaaacctgcccaacattgagcatgctctcatgaggcacattgaagatggca 108674

                                                                          
Query: 117    ctgttctccctgcagatcttcctcaggaaggcgtagaggtagtcgatggcgagcttcttc 176
              ||||||||||||||||||||||||||||| || || | ||||| |||| | | |||||| 
Sbjct: 108675 ctgttctccctgcagatcttcctcaggaaagcatacatgtagttgatgacaatcttcttg 108734

                                                                          
Query: 177    agcggccccgagtccctgcgagccctgatgatggtgttcccgaggatgtgcacgaccccg 236
              |    ||| || ||||||||||| ||||| |  |||||||||||||||||||| ||||||
Sbjct: 108735 acgaaccctgaatccctgcgagctctgatcaccgtgttcccgaggatgtgcaccaccccg 108794

                                                    
Query: 237    gcgtccctgcacgagttcaggaacgcgacctcgtcgcc 274
              ||||||||||||| |||||||||||||| |||||||||
Sbjct: 108795 gcgtccctgcacgcgttcaggaacgcgatctcgtcgcc 108832
to top
>dbj|AK065464.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020H24, full
            insert sequence
          Length = 2893

 Score =  202 bits (102), Expect = 8e-49
 Identities = 189/218 (86%)
 Strand = Plus / Minus

                                                                        
Query: 57   tacacatagaacacctgcccaacattcagcaggctctcatggggaacattgaagatggcg 116
            ||||| ||||| |||||||||||||| |||| ||||||||| || |||||||||||||| 
Sbjct: 2826 tacacgtagaaaacctgcccaacattgagcatgctctcatgaggcacattgaagatggca 2767

                                                                        
Query: 117  ctgttctccctgcagatcttcctcaggaaggcgtagaggtagtcgatggcgagcttcttc 176
            ||||||||||||||||||||||||||||| || || | ||||| |||| | | |||||| 
Sbjct: 2766 ctgttctccctgcagatcttcctcaggaaagcatacatgtagttgatgacaatcttcttg 2707

                                                                        
Query: 177  agcggccccgagtccctgcgagccctgatgatggtgttcccgaggatgtgcacgaccccg 236
            |    ||| || ||||||||||| ||||| |  |||||||||||||||||||| ||||||
Sbjct: 2706 acgaaccctgaatccctgcgagctctgatcaccgtgttcccgaggatgtgcaccaccccg 2647

                                                  
Query: 237  gcgtccctgcacgagttcaggaacgcgacctcgtcgcc 274
            ||||||||||||| |||||||||||||| |||||||||
Sbjct: 2646 gcgtccctgcacgcgttcaggaacgcgatctcgtcgcc 2609
to top
>ref|XM_473875.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2217

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                        
Query: 75   ccaacattcagcaggctctcatggggaacattgaagatggcgctgttctccctgcagatc 134
            |||||||| |||| ||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 2198 ccaacattaagcaagctctcatggggaacattgaagatcacactgttctccctgcagatc 2139

                          
Query: 135  ttcctcaggaaggc 148
            ||||||| ||||||
Sbjct: 2138 ttcctcatgaaggc 2125



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                   
Query: 206  gatggtgttcccgaggatgtgcacgaccccggcgtccctgcacgagttcaggaac 260
            ||||||||||||||||||||| ||||| ||||| ||| | |||  ||||||||||
Sbjct: 2067 gatggtgttcccgaggatgtggacgacaccggcatccttacaccggttcaggaac 2013
to top
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
              complete sequence
          Length = 160484

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 68/74 (91%)
 Strand = Plus / Plus

                                                                          
Query: 75     ccaacattcagcaggctctcatggggaacattgaagatggcgctgttctccctgcagatc 134
              |||||||| |||| ||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 144540 ccaacattaagcaagctctcatggggaacattgaagatcacactgttctccctgcagatc 144599

                            
Query: 135    ttcctcaggaaggc 148
              ||||||| ||||||
Sbjct: 144600 ttcctcatgaaggc 144613



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                     
Query: 206    gatggtgttcccgaggatgtgcacgaccccggcgtccctgcacgagttcaggaac 260
              ||||||||||||||||||||| ||||| ||||| ||| | |||  ||||||||||
Sbjct: 144671 gatggtgttcccgaggatgtggacgacaccggcatccttacaccggttcaggaac 144725
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 68/74 (91%)
 Strand = Plus / Plus

                                                                            
Query: 75       ccaacattcagcaggctctcatggggaacattgaagatggcgctgttctccctgcagatc 134
                |||||||| |||| ||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 31162459 ccaacattaagcaagctctcatggggaacattgaagatcacactgttctccctgcagatc 31162518

                              
Query: 135      ttcctcaggaaggc 148
                ||||||| ||||||
Sbjct: 31162519 ttcctcatgaaggc 31162532



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                       
Query: 206      gatggtgttcccgaggatgtgcacgaccccggcgtccctgcacgagttcaggaac 260
                ||||||||||||||||||||| ||||| ||||| ||| | |||  ||||||||||
Sbjct: 31162590 gatggtgttcccgaggatgtggacgacaccggcatccttacaccggttcaggaac 31162644
to top
>emb|AJ427980.1|OSA427980 Oryza sativa HAK11 gene for putative potasium transporter, exons 1-9
          Length = 4562

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                        
Query: 75   ccaacattcagcaggctctcatggggaacattgaagatggcgctgttctccctgcagatc 134
            |||||||| |||| ||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 4054 ccaacattaagcaagctctcatggggaacattgaagatcacactgttctccctgcagatc 3995

                          
Query: 135  ttcctcaggaaggc 148
            ||||||| ||||||
Sbjct: 3994 ttcctcatgaaggc 3981



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                   
Query: 206  gatggtgttcccgaggatgtgcacgaccccggcgtccctgcacgagttcaggaac 260
            ||||||||||||||||||||| ||||| ||||| ||| | |||  ||||||||||
Sbjct: 3923 gatggtgttcccgaggatgtggacgacaccggcatccttacaccggttcaggaac 3869
to top
>dbj|AK072123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122K08, full
            insert sequence
          Length = 3453

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                        
Query: 75   ccaacattcagcaggctctcatggggaacattgaagatggcgctgttctccctgcagatc 134
            |||||||| |||| ||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 3225 ccaacattaagcaagctctcatggggaacattgaagatcacactgttctccctgcagatc 3166

                          
Query: 135  ttcctcaggaaggc 148
            ||||||| ||||||
Sbjct: 3165 ttcctcatgaaggc 3152



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                   
Query: 206  gatggtgttcccgaggatgtgcacgaccccggcgtccctgcacgagttcaggaac 260
            ||||||||||||||||||||| ||||| ||||| ||| | |||  ||||||||||
Sbjct: 3094 gatggtgttcccgaggatgtggacgacaccggcatccttacaccggttcaggaac 3040
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                    
Query: 93      tcatggggaacattgaagatggcgctgttctccctgcagatcttcctcaggaa 145
               ||||||||||||||||| ||  | ||||||||||||||||||||||| |||||
Sbjct: 6204790 tcatggggaacattgaatatcacactgttctccctgcagatcttcctgaggaa 6204738



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                  
Query: 210     gtgttcccgaggatgtgcacgaccccggcgtccctgcacgagttcaggaac 260
               |||||||| |||||||||||||| || |||||| |||||  ||||||||||
Sbjct: 6204673 gtgttccccaggatgtgcacgacaccagcgtccttgcaccggttcaggaac 6204623



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 455     ggagtccgaatactnctccatcatgctctcca 486
               |||||||||||| |  ||||||||||||||||
Sbjct: 6204407 ggagtccgaatagtcatccatcatgctctcca 6204376
to top
>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_C05
          Length = 126112

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 93    tcatggggaacattgaagatggcgctgttctccctgcagatcttcctcaggaa 145
             ||||||||||||||||| ||  | ||||||||||||||||||||||| |||||
Sbjct: 68183 tcatggggaacattgaatatcacactgttctccctgcagatcttcctgaggaa 68131



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                
Query: 210   gtgttcccgaggatgtgcacgaccccggcgtccctgcacgagttcaggaac 260
             |||||||| |||||||||||||| || |||||| |||||  ||||||||||
Sbjct: 68066 gtgttccccaggatgtgcacgacaccagcgtccttgcaccggttcaggaac 68016



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 455   ggagtccgaatactnctccatcatgctctcca 486
             |||||||||||| |  ||||||||||||||||
Sbjct: 67800 ggagtccgaatagtcatccatcatgctctcca 67769
to top
>emb|AJ427981.1|OSA427981 Oryza sativa HAK12 gene for putative potasium transporter, exons 1-9
          Length = 5418

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                 
Query: 93   tcatggggaacattgaagatggcgctgttctccctgcagatcttcctcaggaa 145
            ||||||||||||||||| ||  | ||||||||||||||||||||||| |||||
Sbjct: 4885 tcatggggaacattgaatatcacactgttctccctgcagatcttcctgaggaa 4833



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 210  gtgttcccgaggatgtgcacgaccccggcgtccctgcacgagttcaggaac 260
            |||||||| | |||||||||||| || |||||| |||||  ||||||||||
Sbjct: 4768 gtgttccccaagatgtgcacgacaccagcgtccttgcaccggttcaggaac 4718



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 455  ggagtccgaatactnctccatcatgctctcca 486
            |||||||||||| |  ||||||||||||||||
Sbjct: 4502 ggagtccgaatagtcatccatcatgctctcca 4471
to top
>dbj|AK069377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012J20, full
            insert sequence
          Length = 3200

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                 
Query: 93   tcatggggaacattgaagatggcgctgttctccctgcagatcttcctcaggaa 145
            ||||||||||||||||| ||  | ||||||||||||||||||||||| |||||
Sbjct: 2915 tcatggggaacattgaatatcacactgttctccctgcagatcttcctgaggaa 2863



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 210  gtgttcccgaggatgtgcacgaccccggcgtccctgcacgagttcaggaac 260
            |||||||| |||||||||||||| || |||||| |||||  ||||||||||
Sbjct: 2798 gtgttccccaggatgtgcacgacaccagcgtccttgcaccggttcaggaac 2748



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 455  ggagtccgaatactnctccatcatgctctcca 486
            |||||||||||| |  ||||||||||||||||
Sbjct: 2532 ggagtccgaatagtcatccatcatgctctcca 2501
to top
>ref|NM_102850.2| Arabidopsis thaliana KUP10; potassium ion transporter AT1G31120
            (KUP10) mRNA, complete cds
          Length = 3135

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 57   tacacatagaacacctgcccaacattcagcaggctctcatggggaacattgaagatggcg 116
            ||||||||||| | ||| |||||||| |  |||||||| || ||||||||||||||||| 
Sbjct: 3060 tacacatagaaaatctggccaacatttaaaaggctctcctgaggaacattgaagatggca 3001

                                   
Query: 117  ctgttctccctgcagatcttcct 139
            ||||| || || || ||||||||
Sbjct: 3000 ctgttttctctacaaatcttcct 2978
to top
>gb|AC004793.2|F28K20 Arabidopsis thaliana chromosome 1 BAC F28K20 sequence, complete
             sequence
          Length = 76458

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                         
Query: 57    tacacatagaacacctgcccaacattcagcaggctctcatggggaacattgaagatggcg 116
             ||||||||||| | ||| |||||||| |  |||||||| || ||||||||||||||||| 
Sbjct: 15515 tacacatagaaaatctggccaacatttaaaaggctctcctgaggaacattgaagatggca 15574

                                    
Query: 117   ctgttctccctgcagatcttcct 139
             ||||| || || || ||||||||
Sbjct: 15575 ctgttttctctacaaatcttcct 15597
to top
>dbj|AK101722.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061B08, full
            insert sequence
          Length = 2930

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 133  tcttcctcaggaaggcgtagaggtagt 159
            ||||||||||||||||||||| |||||
Sbjct: 2582 tcttcctcaggaaggcgtagatgtagt 2556
to top
>emb|AJ234614.1|HVU234614 Hordeum vulgare genomic DNA fragment; clone MWG0882.uni
          Length = 351

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 72  tgcccaacattcagcaggctctcatggggaacattgaa 109
           ||||||||||| || ||||||||||| |||| ||||||
Sbjct: 54  tgcccaacattaagtaggctctcatgaggaatattgaa 17
to top
>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 367     gggaggcgtagctgaggtcgg 387
               |||||||||||||||||||||
Sbjct: 2492733 gggaggcgtagctgaggtcgg 2492713
to top
>gb|BC031618.1| Homo sapiens chromosome 10 open reading frame 30, mRNA (cDNA clone
           MGC:35247 IMAGE:5172600), complete cds
          Length = 1646

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 77  aacattcagcaggctctcatgggg 100
           ||||||||| ||||||||||||||
Sbjct: 404 aacattcagaaggctctcatgggg 427
to top
>gb|AC135601.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0051D22, complete sequence
          Length = 119919

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 424   gctcctgctggtcgagggcg 443
             ||||||||||||||||||||
Sbjct: 86037 gctcctgctggtcgagggcg 86056
to top
>gb|AC135596.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032D10
              map E20933S, complete sequence
          Length = 146118

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 424    gctcctgctggtcgagggcg 443
              ||||||||||||||||||||
Sbjct: 138735 gctcctgctggtcgagggcg 138716
to top
>ref|NG_000004.2| Homo sapiens cytochrome P450, family 3, subfamily A (CYP3A) on chromosome
              7
          Length = 428605

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 173    cttcagcggccccgagtccctgcg 196
              |||||||||||||||| |||||||
Sbjct: 315903 cttcagcggccccgaggccctgcg 315880
to top
>gb|AC145881.4| Pan troglodytes BAC clone RP43-7E18 from chromosome 7, complete
             sequence
          Length = 199758

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 173   cttcagcggccccgagtccctgcg 196
             |||||||||||||||| |||||||
Sbjct: 81775 cttcagcggccccgaggccctgcg 81752
to top
>gb|AY502075.1| Rhodococcus sp. DK17 plasmid pDK2, partial sequence
          Length = 37218

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   cgtcgatcagctcctgctgg 434
             ||||||||||||||||||||
Sbjct: 15454 cgtcgatcagctcctgctgg 15435
to top
>gb|AC005020.5| Homo sapiens BAC clone GS1-259H13 from 7, complete sequence
          Length = 177531

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 173   cttcagcggccccgagtccctgcg 196
             |||||||||||||||| |||||||
Sbjct: 78629 cttcagcggccccgaggccctgcg 78606
to top
>gb|AC124510.4| Mus musculus BAC clone RP23-434A8 from chromosome 12, complete sequence
          Length = 194104

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     acattcagcaggctctcatg 97
              ||||||||||||||||||||
Sbjct: 174466 acattcagcaggctctcatg 174447
to top
>emb|AL590677.7| Human DNA sequence from clone RP11-214D15 on chromosome 10 Contains the
             5' end of the gene for a novel protein (FLJ40283), a novel
             gene and two CpG islands, complete sequence
          Length = 127714

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 77    aacattcagcaggctctcatgggg 100
             ||||||||| ||||||||||||||
Sbjct: 51834 aacattcagaaggctctcatgggg 51811
to top
>emb|AJ854486.1| Human adenovirus type 9 complete genome
          Length = 35083

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 169   gcttcttcagcggccccgagtccctgcg 196
             |||||||||||| ||||||| |||||||
Sbjct: 23726 gcttcttcagcgaccccgagaccctgcg 23753
to top
>gb|AY875648.1| Human adenovirus type 46, complete genome
          Length = 35178

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 169   gcttcttcagcggccccgagtccctgcg 196
             |||||||||||| ||||||| |||||||
Sbjct: 23705 gcttcttcagcgaccccgagaccctgcg 23732
to top
>gb|AF091066.1|AF091066 Callitrichine herpesvirus 3 isolate Animal Cj0159 terminase gene,
          partial cds
          Length = 378

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 76 caacattcagcaggctctcatggg 99
          ||||||||||||||| ||||||||
Sbjct: 73 caacattcagcaggcgctcatggg 50
to top
>gb|AF091065.1|AF091065 Callitrichine herpesvirus 3 isolate Animal Cj021 terminase gene,
          partial cds
          Length = 378

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 76 caacattcagcaggctctcatggg 99
          ||||||||||||||| ||||||||
Sbjct: 73 caacattcagcaggcgctcatggg 50
to top
>gb|AF091063.1|AF091063 Callitrichine herpesvirus 3 isolate Animal Cj0132 terminase gene,
          partial cds
          Length = 378

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 76 caacattcagcaggctctcatggg 99
          ||||||||||||||| ||||||||
Sbjct: 73 caacattcagcaggcgctcatggg 50
to top
>gb|AF091062.1|AF091062 Callitrichine herpesvirus 3 isolate Animal Cj0222 terminase gene,
          partial cds
          Length = 378

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 76 caacattcagcaggctctcatggg 99
          ||||||||||||||| ||||||||
Sbjct: 73 caacattcagcaggcgctcatggg 50
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 424      gctcctgctggtcgagggcg 443
                ||||||||||||||||||||
Sbjct: 10514889 gctcctgctggtcgagggcg 10514870
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 384     tcggcggcggacctggcgtc 403
               ||||||||||||||||||||
Sbjct: 1446246 tcggcggcggacctggcgtc 1446227
to top
>dbj|AP002860.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0409B08
          Length = 134673

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 384   tcggcggcggacctggcgtc 403
             ||||||||||||||||||||
Sbjct: 11894 tcggcggcggacctggcgtc 11875
to top
>dbj|AB107790.2| Rhodococcus sp. RHA1 bphB1, bphS, bphT for
            cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase, sensor
            kinase, response regulator, partial and complete cds
          Length = 8801

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 415  cgtcgatcagctcctgctgg 434
            ||||||||||||||||||||
Sbjct: 3228 cgtcgatcagctcctgctgg 3247
to top
>dbj|AK108558.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-A01, full
           insert sequence
          Length = 1199

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 424 gctcctgctggtcgagggcg 443
           ||||||||||||||||||||
Sbjct: 94  gctcctgctggtcgagggcg 113
to top
>ref|XM_308969.2| Anopheles gambiae str. PEST ENSANGP00000020148 (ENSANGG00000017659),
            partial mRNA
          Length = 1461

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 416  gtcgatcagctcctgctggt 435
            ||||||||||||||||||||
Sbjct: 1155 gtcgatcagctcctgctggt 1136
to top
>gb|AC147245.3| Mus musculus BAC clone RP23-462E12 from 12, complete sequence
          Length = 179735

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     acattcagcaggctctcatg 97
              ||||||||||||||||||||
Sbjct: 176703 acattcagcaggctctcatg 176722
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 424      gctcctgctggtcgagggcg 443
                ||||||||||||||||||||
Sbjct: 10586433 gctcctgctggtcgagggcg 10586414
to top
>gb|AF319782.2| Callitrichine herpesvirus 3 strain CJ0149, complete genome
          Length = 149696

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    caacattcagcaggctctcatggg 99
             ||||||||||||||| ||||||||
Sbjct: 45995 caacattcagcaggcgctcatggg 46018
to top
>dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0044F08
          Length = 141528

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 384   tcggcggcggacctggcgtc 403
             ||||||||||||||||||||
Sbjct: 95867 tcggcggcggacctggcgtc 95848


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,125,785
Number of Sequences: 3902068
Number of extensions: 3125785
Number of successful extensions: 66929
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66679
Number of HSP's gapped (non-prelim): 250
length of query: 494
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 472
effective length of database: 17,147,199,772
effective search space: 8093478292384
effective search space used: 8093478292384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top