ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd24a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009083.1| Triticum aestivum clone wkm1c.pk0004.c7:fis, full... 617 e-173
2gb|BT019029.1| Zea mays clone Contig535.F mRNA sequence 278 2e-71
3gb|AY106246.1| Zea mays PCO105094 mRNA sequence 278 2e-71
4dbj|AK073091.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 1e-41
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 94 6e-16
6gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare str... 94 6e-16
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
8gb|AY341870.1| Glycine max amino acid aminotransferase mRNA, par... 58 3e-05
9gb|BT013120.1| Lycopersicon esculentum clone 114410F, mRNA sequence 52 0.002
10gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete seq... 42 2.0
11emb|CR378670.1| Photobacterium profundum SS9; segment 8/12 42 2.0
12gb|AC159008.2| Mus musculus BAC clone RP23-14E14 from chromosome... 40 7.9
13gb|AC165958.2| Mus musculus BAC clone RP23-417I20 from chromosom... 40 7.9
14gb|AC169508.1| Mus musculus BAC clone RP23-167I21 from chromosom... 40 7.9
15gb|AC129332.6| Mus musculus BAC clone RP23-91I19 from chromosome... 40 7.9
16gb|AC127578.4| Mus musculus BAC clone RP23-428L14 from chromosom... 40 7.9
17gb|AC087775.2| Rattus norvegicus strain Brown Norway clone RP31-... 40 7.9
18gb|AC125016.20| Mus musculus chromosome 7, clone RP24-157A17, co... 40 7.9
19gb|AC100208.16| Mus musculus chromosome 7, clone RP23-59J14, com... 40 7.9
20gb|AC107733.14| Mus musculus chromosome 5, clone RP23-410E2, com... 40 7.9
21gb|AC006465.2| Homo sapiens BAC clone RP11-438H20 from 7, comple... 40 7.9
22gb|AC125057.5| Mus musculus BAC clone RP23-399K1 from chromosome... 40 7.9
23ref|XM_810844.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 7.9
24gb|AC129300.3| Mus musculus BAC clone RP24-427A8 from chromosome... 40 7.9
25gb|AC124712.5| Mus musculus BAC clone RP24-103K4 from chromosome... 40 7.9
26gb|AC124197.4| Mus musculus BAC clone RP23-298C4 from 15, comple... 40 7.9
27gb|AC115797.16| Mus musculus chromosome 17, clone RP23-405J10, c... 40 7.9
28emb|BX276121.14| Mouse DNA sequence from clone RP23-211L15 on ch... 40 7.9
29gb|AC121955.2| Mus musculus BAC clone RP24-223N5 from 5, complet... 40 7.9
30gb|AC055772.16| Mus musculus chromosome 12, clone RP23-291K4, co... 40 7.9
31emb|AL109845.8|HSJ658I14 Human DNA sequence from clone RP4-658I1... 40 7.9
32gb|AC119088.4| Rattus norvegicus 4 BAC CH230-222H3 (Children's H... 40 7.9
33gb|AC103688.4| Homo sapiens chromosome 8, clone CTD-3046C4, comp... 40 7.9
34emb|BX248578.6| Mouse DNA sequence from clone RP23-227K23 on chr... 40 7.9
35emb|AL512585.12| Mouse DNA sequence from clone RP23-236A12 on ch... 40 7.9
36emb|CR846096.4| Zebrafish DNA sequence from clone DKEYP-8C10 in ... 40 7.9
37gb|AC011978.6| Homo sapiens chromosome 8, clone RP11-16E18, comp... 40 7.9
38gb|AC106777.2| Homo sapiens chromosome 5 clone RP11-326M11, comp... 40 7.9
39gb|AC154268.2| Mus musculus BAC clone RP24-235B13 from chromosom... 40 7.9
40gb|AC046131.35|AC046131 Homo sapiens 12 BAC RP11-847A19 (Roswell... 40 7.9
41gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold 40 7.9
42gb|AC154818.2| Mus musculus BAC clone RP23-73C20 from chromosome... 40 7.9
43gb|AC137484.2| Rattus Norvegicus Strain BN/SsNHsd/MCW BAC, CH230... 40 7.9
44gb|AC153962.3| Mus musculus 10 BAC RP24-347C6 (Roswell Park Canc... 40 7.9
45emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D ... 40 7.9
46emb|CT573365.4| M.truncatula DNA sequence from clone MTH2-89E15 ... 40 7.9
47emb|AJ224431.1|RNCFTR3UT Rattus norvegicus CFTR gene 40 7.9
48gb|AC115018.7| Mus musculus chromosome 3, clone RP24-221D2, comp... 40 7.9
49emb|CT476831.7| Mouse DNA sequence from clone RP23-414J18 on chr... 40 7.9
50gb|AC149586.6| Mus musculus BAC clone RP24-510C9 from 12, comple... 40 7.9
51gb|AC151720.2| Mus musculus BAC clone RP23-44P12 from 7, complet... 40 7.9
52emb|AL935147.9| Mouse DNA sequence from clone RP23-33O19 on chro... 40 7.9
53gb|AF007560.1|AF007560 Mus musculus presenilin-1 gene, alternati... 40 7.9
54emb|AL773530.9| Mouse DNA sequence from clone RP23-180A8 on chro... 40 7.9
55gb|AC153959.3| Mus musculus 10 BAC RP24-511J14 (Roswell Park Can... 40 7.9
56emb|AL928557.6| Mouse DNA sequence from clone RP23-349H7 on chro... 40 7.9
57emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chro... 40 7.9 
>gb|BT009083.1| Triticum aestivum clone wkm1c.pk0004.c7:fis, full insert mRNA
           sequence
          Length = 1186

 Score =  617 bits (311), Expect = e-173
 Identities = 384/409 (93%)
 Strand = Plus / Minus

                                                                       
Query: 171 tatttattgttattactctcaactgggccctgaaagtttgtncatagataacaagtgcct 230
           |||||||| | |||||||  |||||  |||||||||||||| ||||||||| | ||||||
Sbjct: 869 tatttattatcattactcgaaactgaaccctgaaagtttgtccatagataataggtgcct 810

                                                                       
Query: 231 tctccttttcaaaaggaaaagaagaatgtccgcgcaaatgattatgcctccgcgttcctg 290
           ||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 809 tctccttttcaaaaggacaagaagaatgtctgcgcaaatgattatgcctccgcattcctg 750

                                                                       
Query: 291 ggtattggtacccctaaccctgctgtcaggactttgtatgcgttctggatttgtcttgtg 350
           || |||| ||| || ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 749 ggaattgttactcccaaccctgctgtcaggactttgtatgcgctctggatttgtcttgtg 690

                                                                       
Query: 351 actggaccgattttcgcatcaccaatttcacgcccgtcaatcatcacaaccggtgtaatt 410
           ||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 accagaccgattttcccatcaccaatttcacgcccgtcaatcatcacaaccggtgtaatt 630

                                                                       
Query: 411 tcgcccattgttccggttgtccacacctcatcggcagcatgaaattcagatagactaatt 470
           || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 629 tcacccattgttccggttgtccacacctcatctgcagcatgaaattcagatagactaatt 570

                                                                       
Query: 471 cgccgttcatgtaataccaggttttctttcacaataagatccatgacagttgcacgggta 530
           |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 569 cgccgttcatgtaataccaggttttctttcacaacaagatccttgacagttgcacgggta 510

                                                            
Query: 531 attcctggaaggcagtantccgcatgaggtgtcaatacaatgcccttct 579
           ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 509 attcctggaaggcagtagtccgcatgaggtgtcaatacaatgcccttct 461



 Score =  137 bits (69), Expect = 5e-29
 Identities = 104/116 (89%)
 Strand = Plus / Minus

                                                                        
Query: 46   acaggttcggcgcacacacgcacacaataaatnatgaatccatagacccaacaagtattt 105
            |||||||||||||||||| ||||||| ||||| |||||| || ||||||| | |||||||
Sbjct: 1109 acaggttcggcgcacacaggcacacagtaaatcatgaattcacagacccagccagtattt 1050

                                                                    
Query: 106  ttcaaatactcgcttttctgttcggtgtgccgctttcactgggtgcttctttgaac 161
            ||| |||||||  |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 1049 ttcgaatactcagttttctgtccggtgtgccactttcactgggtgcttctttgaac 994
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>gb|BT019029.1| Zea mays clone Contig535.F mRNA sequence
          Length = 1152

 Score =  278 bits (140), Expect = 2e-71
 Identities = 250/287 (87%)
 Strand = Plus / Minus

                                                                       
Query: 291 ggtattggtacccctaaccctgctgtcaggactttgtatgcgttctggatttgtcttgtg 350
           ||||| ||||| |||  ||||||||||||||  |||||||| |||||||||||||| |||
Sbjct: 913 ggtatcggtactccttgccctgctgtcaggatcttgtatgccttctggatttgtctagtg 854

                                                                       
Query: 351 actggaccgattttcgcatcaccaatttcacgcccgtcaatcatcacaaccggtgtaatt 410
           |||||||| |||||| | || || |||||||| || |||||||| |||||||||||||||
Sbjct: 853 actggaccaattttcccgtcgccgatttcacgtccatcaatcattacaaccggtgtaatt 794

                                                                       
Query: 411 tcgcccattgttccggttgtccacacctcatcggcagcatgaaattcagatagactaatt 470
           || |||||||||||||||||||| |||||||| |||||||| ||||| || |||||||| 
Sbjct: 793 tcacccattgttccggttgtccatacctcatctgcagcatggaattctgacagactaatg 734

                                                                       
Query: 471 cgccgttcatgtaataccaggttttctttcacaataagatccatgacagttgcacgggta 530
           || ||||||||||| || |  ||||||||||| | |||||||||||||||||| || |||
Sbjct: 733 cgtcgttcatgtaacacaaaattttctttcaccacaagatccatgacagttgctcgcgta 674

                                                          
Query: 531 attcctggaaggcagtantccgcatgaggtgtcaatacaatgccctt 577
           || ||||||||||| || || |||||||||||||||||||| |||||
Sbjct: 673 atgcctggaaggcaatagtcagcatgaggtgtcaatacaattccctt 627
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>gb|AY106246.1| Zea mays PCO105094 mRNA sequence
          Length = 1477

 Score =  278 bits (140), Expect = 2e-71
 Identities = 250/287 (87%)
 Strand = Plus / Minus

                                                                        
Query: 291  ggtattggtacccctaaccctgctgtcaggactttgtatgcgttctggatttgtcttgtg 350
            ||||| ||||| |||  ||||||||||||||  |||||||| |||||||||||||| |||
Sbjct: 1268 ggtatcggtactccttgccctgctgtcaggatcttgtatgccttctggatttgtctagtg 1209

                                                                        
Query: 351  actggaccgattttcgcatcaccaatttcacgcccgtcaatcatcacaaccggtgtaatt 410
            |||||||| |||||| | || || |||||||| || |||||||| ||||||||||| |||
Sbjct: 1208 actggaccaattttcccgtcgccgatttcacgtccatcaatcattacaaccggtgtgatt 1149

                                                                        
Query: 411  tcgcccattgttccggttgtccacacctcatcggcagcatgaaattcagatagactaatt 470
            || |||||||||||||||||||| |||||||| |||||||| ||||| || |||||||| 
Sbjct: 1148 tcacccattgttccggttgtccatacctcatctgcagcatggaattctgacagactaatg 1089

                                                                        
Query: 471  cgccgttcatgtaataccaggttttctttcacaataagatccatgacagttgcacgggta 530
            || ||||||||||| || | |||||||||||| | |||||||||||||||||| || |||
Sbjct: 1088 cgtcgttcatgtaacacaaagttttctttcaccacaagatccatgacagttgctcgcgta 1029

                                                           
Query: 531  attcctggaaggcagtantccgcatgaggtgtcaatacaatgccctt 577
            || ||||||||||| || || |||||||||||||||||||| |||||
Sbjct: 1028 atgcctggaaggcaatagtcagcatgaggtgtcaatacaattccctt 982
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>dbj|AK073091.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022E01, full
            insert sequence
          Length = 2712

 Score =  178 bits (90), Expect = 1e-41
 Identities = 171/198 (86%)
 Strand = Plus / Minus

                                                                        
Query: 320  gactttgtatgcgttctggatttgtcttgtgactggaccgattttcgcatcaccaatttc 379
            |||||||||||| |||||||||||||||||||| ||||| |||||| | |||||||||||
Sbjct: 2435 gactttgtatgcattctggatttgtcttgtgaccggacctattttcccgtcaccaatttc 2376

                                                                        
Query: 380  acgcccgtcaatcatcacaaccggtgtaatttcgcccattgttccggttgtccacacctc 439
            ||| || |||||||| || |||||||| ||||| ||||| ||||| || ||||| |||||
Sbjct: 2375 acgaccatcaatcattacgaccggtgtgatttcacccatcgttccagtagtccatacctc 2316

                                                                        
Query: 440  atcggcagcatgaaattcagatagactaattcgccgttcatgtaataccaggttttcttt 499
             || |||||||||||||| |||| |||||| || ||||||||||| |||||| | |||||
Sbjct: 2315 gtctgcagcatgaaattctgataaactaatgcgacgttcatgtaacaccaggctctcttt 2256

                              
Query: 500  cacaataagatccatgac 517
             || | ||||||||||||
Sbjct: 2255 taccacaagatccatgac 2238



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 59/64 (92%)
 Strand = Plus / Minus

                                                                        
Query: 516  acagttgcacgggtaattcctggaaggcagtantccgcatgaggtgtcaatacaatgccc 575
            ||||||||||| ||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct: 1532 acagttgcacgcgtaatgcctggaaggcagtactcagcatgaggtgtcaacacaatgccc 1473

                
Query: 576  ttct 579
            ||||
Sbjct: 1472 ttct 1469
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                            
Query: 320      gactttgtatgcgttctggatttgtcttgtgactggaccgattttcgcatcaccaatttc 379
                |||||||||||| |||||||||||||||||||| ||||| |||||| | |||||||||||
Sbjct: 13779950 gactttgtatgcattctggatttgtcttgtgaccggacctattttcccgtcaccaatttc 13780009

                               
Query: 380      acgcccgtcaatcat 394
                ||| || ||||||||
Sbjct: 13780010 acgaccatcaatcat 13780024



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                            
Query: 516      acagttgcacgggtaattcctggaaggcagtantccgcatgaggtgtcaatacaatgccc 575
                ||||||||||| ||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct: 13781958 acagttgcacgcgtaatgcctggaaggcagtactcagcatgaggtgtcaacacaatgccc 13782017

                    
Query: 576      ttct 579
                ||||
Sbjct: 13782018 ttct 13782021



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                            
Query: 435      acctcatcggcagcatgaaattcagatagactaattcgccgttcatgtaataccaggttt 494
                ||||| || |||||||||||||| |||| |||||| || ||||||||||| |||||| | 
Sbjct: 13781170 acctcgtctgcagcatgaaattctgataaactaatgcgacgttcatgtaacaccaggctc 13781229

                                       
Query: 495      tctttcacaataagatccatgac 517
                ||||| || | ||||||||||||
Sbjct: 13781230 tcttttaccacaagatccatgac 13781252
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>gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0048D11, from chromosome 3, complete sequence
          Length = 158911

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                         
Query: 320   gactttgtatgcgttctggatttgtcttgtgactggaccgattttcgcatcaccaatttc 379
             |||||||||||| |||||||||||||||||||| ||||| |||||| | |||||||||||
Sbjct: 56478 gactttgtatgcattctggatttgtcttgtgaccggacctattttcccgtcaccaatttc 56537

                            
Query: 380   acgcccgtcaatcat 394
             ||| || ||||||||
Sbjct: 56538 acgaccatcaatcat 56552



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                         
Query: 516   acagttgcacgggtaattcctggaaggcagtantccgcatgaggtgtcaatacaatgccc 575
             ||||||||||| ||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct: 58486 acagttgcacgcgtaatgcctggaaggcagtactcagcatgaggtgtcaacacaatgccc 58545

                 
Query: 576   ttct 579
             ||||
Sbjct: 58546 ttct 58549



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                         
Query: 435   acctcatcggcagcatgaaattcagatagactaattcgccgttcatgtaataccaggttt 494
             ||||| || |||||||||||||| |||| |||||| || ||||||||||| |||||| | 
Sbjct: 57698 acctcgtctgcagcatgaaattctgataaactaatgcgacgttcatgtaacaccaggctc 57757

                                    
Query: 495   tctttcacaataagatccatgac 517
             ||||| || | ||||||||||||
Sbjct: 57758 tcttttaccacaagatccatgac 57780
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                            
Query: 320      gactttgtatgcgttctggatttgtcttgtgactggaccgattttcgcatcaccaatttc 379
                |||||||||||| |||||||||||||||||||| ||||| |||||| | |||||||||||
Sbjct: 13774925 gactttgtatgcattctggatttgtcttgtgaccggacctattttcccgtcaccaatttc 13774984

                               
Query: 380      acgcccgtcaatcat 394
                ||| || ||||||||
Sbjct: 13774985 acgaccatcaatcat 13774999



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                            
Query: 516      acagttgcacgggtaattcctggaaggcagtantccgcatgaggtgtcaatacaatgccc 575
                ||||||||||| ||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct: 13776933 acagttgcacgcgtaatgcctggaaggcagtactcagcatgaggtgtcaacacaatgccc 13776992

                    
Query: 576      ttct 579
                ||||
Sbjct: 13776993 ttct 13776996



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                            
Query: 435      acctcatcggcagcatgaaattcagatagactaattcgccgttcatgtaataccaggttt 494
                ||||| || |||||||||||||| |||| |||||| || ||||||||||| |||||| | 
Sbjct: 13776145 acctcgtctgcagcatgaaattctgataaactaatgcgacgttcatgtaacaccaggctc 13776204

                                       
Query: 495      tctttcacaataagatccatgac 517
                ||||| || | ||||||||||||
Sbjct: 13776205 tcttttaccacaagatccatgac 13776227
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>gb|AY341870.1| Glycine max amino acid aminotransferase mRNA, partial cds
          Length = 560

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                       
Query: 506 aagatccatgacagttgcacgggtaattcctggaaggcagtantccgcatgaggtgtcaa 565
           ||||||||| ||||||||||| ||||| || ||||| ||||| || |||||||| |||||
Sbjct: 558 aagatccattacagttgcacgagtaatgccaggaagacagtaatcagcatgaggggtcaa 499
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>gb|BT013120.1| Lycopersicon esculentum clone 114410F, mRNA sequence
          Length = 1777

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 414  cccattgttccggttgtccacacctcatcggcagcatgaaattcagatagactaattc 471
            ||||| ||||| ||||||||||||||||| ||||  |||||||| ||||  |||||||
Sbjct: 1554 cccatagttcctgttgtccacacctcatcagcagtgtgaaattctgataagctaattc 1497
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>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence
          Length = 3281944

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 150     gcttctttgaacaatagcgac 170
               |||||||||||||||||||||
Sbjct: 2467704 gcttctttgaacaatagcgac 2467724
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>emb|CR378670.1| Photobacterium profundum SS9; segment 8/12
          Length = 348672

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 101   tatttttcaaatactcgcttttctg 125
             ||||||||||||||| |||||||||
Sbjct: 12760 tatttttcaaatactggcttttctg 12736
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>gb|AC159008.2| Mus musculus BAC clone RP23-14E14 from chromosome 7, complete sequence
          Length = 239149

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    caaaaggaaaagaagaatgt 259
              ||||||||||||||||||||
Sbjct: 171150 caaaaggaaaagaagaatgt 171169
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>gb|AC165958.2| Mus musculus BAC clone RP23-417I20 from chromosome 16, complete sequence
          Length = 186202

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    caaaaggaaaagaagaatgt 259
              ||||||||||||||||||||
Sbjct: 182109 caaaaggaaaagaagaatgt 182128
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>gb|AC169508.1| Mus musculus BAC clone RP23-167I21 from chromosome 16, complete sequence
          Length = 211870

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    caaaaggaaaagaagaatgt 259
              ||||||||||||||||||||
Sbjct: 134631 caaaaggaaaagaagaatgt 134650
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>gb|AC129332.6| Mus musculus BAC clone RP23-91I19 from chromosome 9, complete sequence
          Length = 219117

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   cctaaccctgctgtcaggac 322
             ||||||||||||||||||||
Sbjct: 72307 cctaaccctgctgtcaggac 72326
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>gb|AC127578.4| Mus musculus BAC clone RP23-428L14 from chromosome 15, complete sequence
          Length = 206410

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    aaaaggaaaagaagaatgtc 260
              ||||||||||||||||||||
Sbjct: 172503 aaaaggaaaagaagaatgtc 172484
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>gb|AC087775.2| Rattus norvegicus strain Brown Norway clone RP31-464J4, complete
             sequence
          Length = 185081

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   ttcatgtaataccaggtttt 495
             ||||||||||||||||||||
Sbjct: 74879 ttcatgtaataccaggtttt 74860
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>gb|AC125016.20| Mus musculus chromosome 7, clone RP24-157A17, complete sequence
          Length = 176607

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   caaaaggaaaagaagaatgt 259
             ||||||||||||||||||||
Sbjct: 53776 caaaaggaaaagaagaatgt 53795
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>gb|AC100208.16| Mus musculus chromosome 7, clone RP23-59J14, complete sequence
          Length = 280763

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   caaaaggaaaagaagaatgt 259
             ||||||||||||||||||||
Sbjct: 41668 caaaaggaaaagaagaatgt 41649
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>gb|AC107733.14| Mus musculus chromosome 5, clone RP23-410E2, complete sequence
          Length = 200403

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    caaaaggaaaagaagaatgt 259
              ||||||||||||||||||||
Sbjct: 158491 caaaaggaaaagaagaatgt 158510
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>gb|AC006465.2| Homo sapiens BAC clone RP11-438H20 from 7, complete sequence
          Length = 101768

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   gtgcttctttgaacaatagc 167
             ||||||||||||||||||||
Sbjct: 29305 gtgcttctttgaacaatagc 29286
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>gb|AC125057.5| Mus musculus BAC clone RP23-399K1 from chromosome 12, complete sequence
          Length = 182276

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    ctatttattgttattactct 189
              ||||||||||||||||||||
Sbjct: 131974 ctatttattgttattactct 131993
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>ref|XM_810844.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053509791.70) partial mRNA
          Length = 1134

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 57  gcacacacgcacacaataaa 76
           ||||||||||||||||||||
Sbjct: 127 gcacacacgcacacaataaa 108
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>gb|AC129300.3| Mus musculus BAC clone RP24-427A8 from chromosome 7, complete sequence
          Length = 155123

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   caaaaggaaaagaagaatgt 259
             ||||||||||||||||||||
Sbjct: 40195 caaaaggaaaagaagaatgt 40214
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>gb|AC124712.5| Mus musculus BAC clone RP24-103K4 from chromosome 12, complete sequence
          Length = 169132

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 484   ataccaggttttctttcaca 503
             ||||||||||||||||||||
Sbjct: 56217 ataccaggttttctttcaca 56236
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>gb|AC124197.4| Mus musculus BAC clone RP23-298C4 from 15, complete sequence
          Length = 184090

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    aaaaggaaaagaagaatgtc 260
              ||||||||||||||||||||
Sbjct: 176141 aaaaggaaaagaagaatgtc 176160
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>gb|AC115797.16| Mus musculus chromosome 17, clone RP23-405J10, complete sequence
          Length = 193909

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   caaaaggaaaagaagaatgt 259
             ||||||||||||||||||||
Sbjct: 37715 caaaaggaaaagaagaatgt 37696
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>emb|BX276121.14| Mouse DNA sequence from clone RP23-211L15 on chromosome X, complete
            sequence
          Length = 9074

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 240  caaaaggaaaagaagaatgt 259
            ||||||||||||||||||||
Sbjct: 4879 caaaaggaaaagaagaatgt 4860
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>gb|AC121955.2| Mus musculus BAC clone RP24-223N5 from 5, complete sequence
          Length = 153819

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   caaaaggaaaagaagaatgt 259
             ||||||||||||||||||||
Sbjct: 15068 caaaaggaaaagaagaatgt 15087
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>gb|AC055772.16| Mus musculus chromosome 12, clone RP23-291K4, complete sequence
          Length = 168350

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    gcgcacacacgcacacaata 74
             ||||||||||||||||||||
Sbjct: 22556 gcgcacacacgcacacaata 22575
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>emb|AL109845.8|HSJ658I14 Human DNA sequence from clone RP4-658I14 on chromosome 1p33-34.3
             Contains the 3' end of the MPRP-1 gene for metalloprotease
             related protein 1, complete sequence
          Length = 125419

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    cacacacgcacacaataaat 77
             ||||||||||||||||||||
Sbjct: 63332 cacacacgcacacaataaat 63313
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>gb|AC119088.4| Rattus norvegicus 4 BAC CH230-222H3 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 224687

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 476    ttcatgtaataccaggtttt 495
              ||||||||||||||||||||
Sbjct: 125386 ttcatgtaataccaggtttt 125405
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>gb|AC103688.4| Homo sapiens chromosome 8, clone CTD-3046C4, complete sequence
          Length = 211222

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    ttcaaaaggaaaagaagaat 257
              ||||||||||||||||||||
Sbjct: 197943 ttcaaaaggaaaagaagaat 197962
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>emb|BX248578.6| Mouse DNA sequence from clone RP23-227K23 on chromosome 11 Contains a
              pseudogene similar to part of eukaryotic translation
              initiation factor 3, subunit 5 (epsilon) Eif3s5, complete
              sequence
          Length = 160629

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    caaaaggaaaagaagaatgt 259
              ||||||||||||||||||||
Sbjct: 146715 caaaaggaaaagaagaatgt 146734
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>emb|AL512585.12| Mouse DNA sequence from clone RP23-236A12 on chromosome 4, complete
              sequence
          Length = 217400

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    caaaaggaaaagaagaatgt 259
              ||||||||||||||||||||
Sbjct: 147613 caaaaggaaaagaagaatgt 147632
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>emb|CR846096.4| Zebrafish DNA sequence from clone DKEYP-8C10 in linkage group 14,
             complete sequence
          Length = 91350

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    cgcacacacgcacacaataa 75
             ||||||||||||||||||||
Sbjct: 58073 cgcacacacgcacacaataa 58092
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>gb|AC011978.6| Homo sapiens chromosome 8, clone RP11-16E18, complete sequence
          Length = 159715

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   ttcaaaaggaaaagaagaat 257
             ||||||||||||||||||||
Sbjct: 55813 ttcaaaaggaaaagaagaat 55832
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>gb|AC106777.2| Homo sapiens chromosome 5 clone RP11-326M11, complete sequence
          Length = 161720

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   ccttttcaaaaggaaaagaa 253
             ||||||||||||||||||||
Sbjct: 73653 ccttttcaaaaggaaaagaa 73672
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>gb|AC154268.2| Mus musculus BAC clone RP24-235B13 from chromosome 13, complete sequence
          Length = 157088

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    caaaaggaaaagaagaatgt 259
              ||||||||||||||||||||
Sbjct: 108099 caaaaggaaaagaagaatgt 108080
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>gb|AC046131.35|AC046131 Homo sapiens 12 BAC RP11-847A19 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 111131

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 239  tcaaaaggaaaagaagaatg 258
            ||||||||||||||||||||
Sbjct: 2944 tcaaaaggaaaagaagaatg 2925
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>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold
          Length = 1888123

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 476     ttcatgtaataccaggtttt 495
               ||||||||||||||||||||
Sbjct: 1408051 ttcatgtaataccaggtttt 1408032
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>gb|AC154818.2| Mus musculus BAC clone RP23-73C20 from chromosome 16, complete sequence
          Length = 183223

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    ttttcaaaaggaaaagaaga 255
              ||||||||||||||||||||
Sbjct: 125611 ttttcaaaaggaaaagaaga 125592
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>gb|AC137484.2| Rattus Norvegicus Strain BN/SsNHsd/MCW BAC, CH230-349A03, complete
             sequence
          Length = 164897

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    cgcacacacgcacacaataa 75
             ||||||||||||||||||||
Sbjct: 14382 cgcacacacgcacacaataa 14401
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>gb|AC153962.3| Mus musculus 10 BAC RP24-347C6 (Roswell Park Cancer Institute
            (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 147491

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  caaaaggaaaagaagaatgt 259
            ||||||||||||||||||||
Sbjct: 4921 caaaaggaaaagaagaatgt 4940
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>emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D (4 of 5)
          Length = 896449

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 457    cagatagactaattcgccgt 476
              ||||||||||||||||||||
Sbjct: 605625 cagatagactaattcgccgt 605644
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>emb|CT573365.4| M.truncatula DNA sequence from clone MTH2-89E15 on chromosome 3, complete
              sequence
          Length = 123679

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 452    aaattcagatagactaattc 471
              ||||||||||||||||||||
Sbjct: 103615 aaattcagatagactaattc 103596



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 452   aaattcagatagactaattc 471
             ||||||||||||||||||||
Sbjct: 94456 aaattcagatagactaattc 94437
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>emb|AJ224431.1|RNCFTR3UT Rattus norvegicus CFTR gene
          Length = 5082

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 476 ttcatgtaataccaggtttt 495
           ||||||||||||||||||||
Sbjct: 278 ttcatgtaataccaggtttt 259
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>gb|AC115018.7| Mus musculus chromosome 3, clone RP24-221D2, complete sequence
          Length = 164720

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   caaaaggaaaagaagaatgt 259
             ||||||||||||||||||||
Sbjct: 89350 caaaaggaaaagaagaatgt 89331
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>emb|CT476831.7| Mouse DNA sequence from clone RP23-414J18 on chromosome 16, complete
            sequence
          Length = 193062

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  caaaaggaaaagaagaatgt 259
            ||||||||||||||||||||
Sbjct: 3531 caaaaggaaaagaagaatgt 3550
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>gb|AC149586.6| Mus musculus BAC clone RP24-510C9 from 12, complete sequence
          Length = 198641

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 484    ataccaggttttctttcaca 503
              ||||||||||||||||||||
Sbjct: 187135 ataccaggttttctttcaca 187154
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>gb|AC151720.2| Mus musculus BAC clone RP23-44P12 from 7, complete sequence
          Length = 233007

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    caaaaggaaaagaagaatgt 259
              ||||||||||||||||||||
Sbjct: 220168 caaaaggaaaagaagaatgt 220149
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>emb|AL935147.9| Mouse DNA sequence from clone RP23-33O19 on chromosome 2, complete
              sequence
          Length = 241249

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    caaaaggaaaagaagaatgt 259
              ||||||||||||||||||||
Sbjct: 189668 caaaaggaaaagaagaatgt 189687
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>gb|AF007560.1|AF007560 Mus musculus presenilin-1 gene, alternatively spliced transcripts,
             complete cds
          Length = 48974

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    gcgcacacacgcacacaata 74
             ||||||||||||||||||||
Sbjct: 23720 gcgcacacacgcacacaata 23701
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>emb|AL773530.9| Mouse DNA sequence from clone RP23-180A8 on chromosome 2, complete
              sequence
          Length = 188424

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    aaaaggaaaagaagaatgtc 260
              ||||||||||||||||||||
Sbjct: 116127 aaaaggaaaagaagaatgtc 116108
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>gb|AC153959.3| Mus musculus 10 BAC RP24-511J14 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 165278

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    caaaaggaaaagaagaatgt 259
              ||||||||||||||||||||
Sbjct: 153012 caaaaggaaaagaagaatgt 153031
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>emb|AL928557.6| Mouse DNA sequence from clone RP23-349H7 on chromosome 2, complete
             sequence
          Length = 159128

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    cacacacgcacacaataaat 77
             ||||||||||||||||||||
Sbjct: 55666 cacacacgcacacaataaat 55647
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>emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chromosome 4, complete
             sequence
          Length = 205589

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   caaaaggaaaagaagaatgt 259
             ||||||||||||||||||||
Sbjct: 55642 caaaaggaaaagaagaatgt 55623


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,135,446
Number of Sequences: 3902068
Number of extensions: 5135446
Number of successful extensions: 155957
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 155698
Number of HSP's gapped (non-prelim): 259
length of query: 579
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 556
effective length of database: 17,143,297,704
effective search space: 9531673523424
effective search space used: 9531673523424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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