Clone Name | rbasd24a09 |
---|---|
Clone Library Name | barley_pub |
>gb|AC019043.8| Homo sapiens BAC clone RP11-11B21 from 7, complete sequence Length = 211680 Score = 42.1 bits (21), Expect = 0.40 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 gagcctgggggagccggacgg 75 ||||||||||||||||||||| Sbjct: 198553 gagcctgggggagccggacgg 198533
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 gtacagattgctttgcagaa 34 |||||||||||||||||||| Sbjct: 1215487 gtacagattgctttgcagaa 1215468
>emb|CR718273.2|CNS0GH5Z Tetraodon nigroviridis full-length cDNA Length = 1097 Score = 38.2 bits (19), Expect = 6.2 Identities = 25/27 (92%) Strand = Plus / Plus Query: 59 ctgggggagccggacggctcagccggt 85 |||||| ||||||||||||||| |||| Sbjct: 621 ctggggcagccggacggctcaggcggt 647
>emb|CR859902.1| Pongo pygmaeus mRNA; cDNA DKFZp469D204 (from clone DKFZp469D204) Length = 3883 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 ttgggactggagcctgggg 64 ||||||||||||||||||| Sbjct: 174 ttgggactggagcctgggg 192
>emb|AL731866.8| Mouse DNA sequence from clone RP23-37F22 on chromosome 11 Contains the 5' end of a variant of the Ccl1 gene for chemokine (C-C motif) ligand 1, complete sequence Length = 105085 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 attgggactggagcctggg 63 ||||||||||||||||||| Sbjct: 18288 attgggactggagcctggg 18270
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 gaaaggccaacgtattggg 50 ||||||||||||||||||| Sbjct: 32392125 gaaaggccaacgtattggg 32392107
>gb|AC016903.3| Homo sapiens BAC clone RP11-259I20 from 2, complete sequence Length = 172512 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 agattgctttgcagaaagg 37 ||||||||||||||||||| Sbjct: 107254 agattgctttgcagaaagg 107272
>ref|XM_228270.3| PREDICTED: Rattus norvegicus similar to KIAA1919 protein (predicted) (LOC309809), mRNA Length = 1680 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 ggagcctgggggagccgga 72 ||||||||||||||||||| Sbjct: 95 ggagcctgggggagccgga 113
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 49 ggactggagcctgggggag 67 ||||||||||||||||||| Sbjct: 722231 ggactggagcctgggggag 722249
>dbj|AP004125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1767_D02 Length = 139145 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 gaaaggccaacgtattggg 50 ||||||||||||||||||| Sbjct: 53638 gaaaggccaacgtattggg 53620
>emb|AL713840.1|CNS07YOU Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 425A1 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 128620 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 attgggactggagcctggg 63 ||||||||||||||||||| Sbjct: 119136 attgggactggagcctggg 119154 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 649,520 Number of Sequences: 3902068 Number of extensions: 649520 Number of successful extensions: 44425 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44383 Number of HSP's gapped (non-prelim): 42 length of query: 132 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 111 effective length of database: 17,151,101,840 effective search space: 1903772304240 effective search space used: 1903772304240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)