ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd23l06 |
|---|---|
| Clone Library Name | barley_pub |
>C74A2_ORYSA (Q7XYS3) Cytochrome P450 74A2 (EC 4.2.1.92) (Allene oxide synthase| 2) (Hydroperoxide dehydrase 2) Length = 478 Score = 90.9 bits (224), Expect = 2e-18 Identities = 49/102 (48%), Positives = 57/102 (55%) Frame = -3 Query: 514 CXTKXXXVXXXXXXXXVXXRFVGKXGSKXXKYVYWSNGRETESPSVHNKQCPGKNXXXXX 335 C T+ V V RFVG+ G K +YVYWSNGRETE+PSV NKQCPGKN Sbjct: 379 CATRDPRVFGATAREFVGDRFVGEEGRKLLQYVYWSNGRETENPSVDNKQCPGKNLVVLV 438 Query: 334 XXXXXXXXXLRYDTFTAKVGLDLLGTKVEFTGVTKATSGVAD 209 LRYDTFTA+ G KV TGVTKA++ + Sbjct: 439 GRLLLVELFLRYDTFTAEA-----GKKVVITGVTKASTSAVN 475
>CP74A_ARATH (Q96242) Cytochrome P450 74A, chloroplast precursor (EC 4.2.1.92)| (Allene oxide synthase) (Hydroperoxide dehydrase) Length = 518 Score = 71.2 bits (173), Expect = 2e-12 Identities = 35/81 (43%), Positives = 47/81 (58%) Frame = -3 Query: 466 VXXRFVGKXGSKXXKYVYWSNGRETESPSVHNKQCPGKNXXXXXXXXXXXXXXLRYDTFT 287 V RFVG+ G K ++V WSNG ETE+P+V NKQC GK+ RYD+F Sbjct: 437 VPERFVGEEGEKLLRHVLWSNGPETETPTVGNKQCAGKDFVVLVARLFVIEIFRRYDSFD 496 Query: 286 AKVGLDLLGTKVEFTGVTKAT 224 +VG LG+ V F+ + KA+ Sbjct: 497 IEVGTSPLGSSVNFSSLRKAS 517
>C74A1_ORYSA (Q7Y0C8) Cytochrome P450 74A1, chloroplast precursor (EC 4.2.1.92)| (Allene oxide synthase 1) (Hydroperoxide dehydrase 1) Length = 512 Score = 68.9 bits (167), Expect = 8e-12 Identities = 33/81 (40%), Positives = 48/81 (59%) Frame = -3 Query: 466 VXXRFVGKXGSKXXKYVYWSNGRETESPSVHNKQCPGKNXXXXXXXXXXXXXXLRYDTFT 287 V RF+G+ G++ ++V WSNG ET +P++H+KQC GK+ LRYD+F Sbjct: 431 VPDRFLGEDGARLLRHVVWSNGPETAAPTLHDKQCAGKDFVVLVARLLLVELFLRYDSFD 490 Query: 286 AKVGLDLLGTKVEFTGVTKAT 224 +VG LG+ V T + KAT Sbjct: 491 VEVGTSTLGSSVTVTSLKKAT 511
>CP74_LINUS (P48417) Cytochrome P450 74A, chloroplast precursor (EC 4.2.1.92)| (Allene oxide synthase) (Hydroperoxide dehydrase) Length = 536 Score = 67.8 bits (164), Expect = 2e-11 Identities = 35/81 (43%), Positives = 45/81 (55%) Frame = -3 Query: 466 VXXRFVGKXGSKXXKYVYWSNGRETESPSVHNKQCPGKNXXXXXXXXXXXXXXLRYDTFT 287 V RFVG+ G K +YV WSNG ETE+PSV NKQC GK+ RYD+F Sbjct: 456 VADRFVGE-GVKLMEYVMWSNGPETETPSVANKQCAGKDFVVMAARLFVVELFKRYDSFD 514 Query: 286 AKVGLDLLGTKVEFTGVTKAT 224 +VG LG + T + ++T Sbjct: 515 IEVGTSSLGASITLTSLKRST 535
>C74A2_PARAR (Q40778) Cytochrome P450 74A2 (EC 4.2.1.92) (Allene oxide synthase)| (Rubber particle protein) (RPP) Length = 473 Score = 63.9 bits (154), Expect = 3e-10 Identities = 35/81 (43%), Positives = 44/81 (54%) Frame = -3 Query: 466 VXXRFVGKXGSKXXKYVYWSNGRETESPSVHNKQCPGKNXXXXXXXXXXXXXXLRYDTFT 287 V RFVG G KYV+WSNG ETESP+V NKQC GK+ RYD+F Sbjct: 393 VPDRFVGD-GEALLKYVWWSNGPETESPTVENKQCAGKDFVVLITRLFVIELFRRYDSFE 451 Query: 286 AKVGLDLLGTKVEFTGVTKAT 224 ++G LG V T + +A+ Sbjct: 452 IELGESPLGAAVTLTFLKRAS 472
>C74A3_ORYSA (Q6Z6L1) Cytochrome P450 74A3 (EC 4.2.1.92) (Allene oxide synthase| 3) (Hydroperoxide dehydrase 3) Length = 500 Score = 59.3 bits (142), Expect = 7e-09 Identities = 36/86 (41%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = -3 Query: 466 VXXRFV--GKXGSK-XXKYVYWSNGRETESPSVHNKQCPGKNXXXXXXXXXXXXXXLRYD 296 V RFV G G + ++V WSNG ET +PS NKQCPGK+ RYD Sbjct: 415 VADRFVAGGAAGDRPLLEHVVWSNGPETRAPSEGNKQCPGKDMVVAVGRLMVAELFRRYD 474 Query: 295 TFTAKVGLDLLGTKVEFTGVTKATSG 218 TF A V + V FT +T+A+SG Sbjct: 475 TFAADVVEAPVEPVVTFTSLTRASSG 500
>C74A4_ORYSA (Q6Z6K9) Cytochrome P450 74A4 (EC 4.2.1.92) (Allene oxide synthase| 4) (Hydroperoxide dehydrase 4) Length = 510 Score = 58.9 bits (141), Expect = 9e-09 Identities = 36/86 (41%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Frame = -3 Query: 466 VXXRFVGKXGSKXX---KYVYWSNGRETESPSVHNKQCPGKNXXXXXXXXXXXXXXLRYD 296 V RFV GS ++V WSNG ET +PS NKQCPGK+ RYD Sbjct: 417 VPDRFVSGAGSAARPLLEHVVWSNGPETGTPSEGNKQCPGKDMVVAVGRLMVAGLFRRYD 476 Query: 295 TFTAKVGLDLLGTKVEFTGVTKATSG 218 TF A V L V FT +T+A G Sbjct: 477 TFAADVEELPLEPVVTFTSLTRAADG 502
>YHR1_HCMVA (P09702) Hypothetical protein HHRF1| Length = 156 Score = 31.6 bits (70), Expect = 1.5 Identities = 24/63 (38%), Positives = 29/63 (46%) Frame = -2 Query: 284 QSRPRPSRHQG*VHRRHQGNVRCGRRCLNPSPDGHR*QRDQRRAATILTPSSRTYVRASL 105 +S RPS G + Q VR R P+ D +R RD R A T P+S R SL Sbjct: 64 RSENRPSVRTG---AQKQPAVRATERFTAPAADSYR--RDVRAAGTSALPASPPRARPSL 118 Query: 104 YLP 96 Y P Sbjct: 119 YSP 121
>GP124_HUMAN (Q96PE1) Probable G-protein coupled receptor 124 precursor (Tumor| endothelial marker 5) Length = 1331 Score = 30.8 bits (68), Expect = 2.5 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = -2 Query: 287 GQSRPRPSRHQG*VHRRHQGNVRCGRRCLNPSPDGHR 177 G+ P P+ +G + RH NV GRR GHR Sbjct: 1148 GEGEPEPAGTRGNLAHRHPNNVHHGRRAHKSRAKGHR 1184
>SWR1_CANGA (Q6FK48) Helicase SWR1 (EC 3.6.1.-)| Length = 1450 Score = 29.3 bits (64), Expect = 7.3 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +2 Query: 179 DGRPVKDLNSVCHTGRCLGDAGELNLGAEKVEADFGREGVVPEEQL 316 DGR + +V G + GEL LG ++ + G++P E+L Sbjct: 1104 DGRTTIEKFAVLTPGAVTSNIGELTLGMDEFVTPNSKSGIIPYEEL 1149 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,666,087 Number of Sequences: 219361 Number of extensions: 1111463 Number of successful extensions: 2671 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2585 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2668 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
