Clone Name | rbasd23l03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 51 gaacccaatgtcgttcctcagtcacaattgaagccgggagaa 92 |||||||||| ||| ||||||||||||| || |||||||||| Sbjct: 29080379 gaacccaatggcgtgcctcagtcacaatcgatgccgggagaa 29080420 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cagcttgaagaacttgaagtcacagaac 391 |||||||||||||||||| || |||||| Sbjct: 29080695 cagcttgaagaacttgaactcgcagaac 29080722
>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0596H10 Length = 166570 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 51 gaacccaatgtcgttcctcagtcacaattgaagccgggagaa 92 |||||||||| ||| ||||||||||||| || |||||||||| Sbjct: 95366 gaacccaatggcgtgcctcagtcacaatcgatgccgggagaa 95407 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 cagcttgaagaacttgaagtcacagaac 391 |||||||||||||||||| || |||||| Sbjct: 95682 cagcttgaagaacttgaactcgcagaac 95709
>dbj|AK110868.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-E03, full insert sequence Length = 1492 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 51 gaacccaatgtcgttcctcagtcacaattgaagccgggagaa 92 |||||||||| ||| ||||||||||||| || |||||||||| Sbjct: 1292 gaacccaatggcgtgcctcagtcacaatcgatgccgggagaa 1251 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 364 cagcttgaagaacttgaagtcacagaac 391 |||||||||||||||||| || |||||| Sbjct: 976 cagcttgaagaacttgaactcgcagaac 949
>emb|AL451064.6| Human DNA sequence from clone RP11-177G23 on chromosome 6 Contains the the 5' end of the SH3BGRL2 gene for SH3 domain binding glutamic acid-rich protein-like 2 and a CpG island, complete sequence Length = 79743 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 292 tctgtaaagaaaccagctggaa 313 |||||||||||||||||||||| Sbjct: 40317 tctgtaaagaaaccagctggaa 40296
>gb|AC131113.4| Mus musculus BAC clone RP24-155C13 from chromosome 3, complete sequence Length = 173268 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 ttcctcagtcacaattgaagc 84 ||||||||||||||||||||| Sbjct: 47101 ttcctcagtcacaattgaagc 47121
>gb|AC102677.9| Mus musculus chromosome 5, clone RP24-67M11, complete sequence Length = 167898 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 413 gagatgagcacaacttttccactgg 437 |||||||||||| |||||||||||| Sbjct: 51042 gagatgagcacatcttttccactgg 51066
>gb|AC009779.18| Homo sapiens 12 BAC RP11-644F5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 192550 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 254 ttcctcttgccttcctccctc 274 ||||||||||||||||||||| Sbjct: 165627 ttcctcttgccttcctccctc 165647
>emb|BX005027.13| Zebrafish DNA sequence from clone DKEY-4C2 in linkage group 10, complete sequence Length = 241472 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 252 ctttcctcttgccttcctccc 272 ||||||||||||||||||||| Sbjct: 44069 ctttcctcttgccttcctccc 44049
>gb|AC092174.5| Homo sapiens BAC clone RP13-522B14 from 7, complete sequence Length = 158187 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 gttcagcttgaagaacttga 380 |||||||||||||||||||| Sbjct: 118174 gttcagcttgaagaacttga 118155
>gb|U80453.1| Caenorhabditis elegans cosmid C23H3, complete sequence Length = 39721 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 caacgtcatcttctaaatca 121 |||||||||||||||||||| Sbjct: 27341 caacgtcatcttctaaatca 27322
>gb|U40952.3| Caenorhabditis elegans cosmid C03B1, complete sequence Length = 42907 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 ttttattacatatacgatta 21 |||||||||||||||||||| Sbjct: 24128 ttttattacatatacgatta 24147
>ref|XM_971344.1| PREDICTED: Tribolium castaneum hypothetical protein LOC662881 (LOC662881), mRNA Length = 753 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 cttcctcttcctcgagctgtcggc 204 ||||||||||||| |||||||||| Sbjct: 388 cttcctcttcctccagctgtcggc 365
>gb|AC023170.10| Homo sapiens chromosome 10 clone RP11-373P23, complete sequence Length = 195448 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 tctgtaaagaaaccagctgg 311 |||||||||||||||||||| Sbjct: 121481 tctgtaaagaaaccagctgg 121462
>gb|BC019583.1|BC019583 Homo sapiens, clone IMAGE:4499056, mRNA, partial cds Length = 792 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 gttcagcttgaagaacttga 380 |||||||||||||||||||| Sbjct: 247 gttcagcttgaagaacttga 228
>ref|XM_682690.1| PREDICTED: Danio rerio similar to pleckstrin homology-like domain, family B, member 3 (LOC559356), mRNA Length = 1478 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 tcaggatcttcccatggtag 538 |||||||||||||||||||| Sbjct: 1445 tcaggatcttcccatggtag 1464
>ref|NM_061253.3| Caenorhabditis elegans C23H3.9b (C23H3.9) mRNA, complete cds Length = 1635 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 caacgtcatcttctaaatca 121 |||||||||||||||||||| Sbjct: 1606 caacgtcatcttctaaatca 1625
>ref|NM_061252.3| Caenorhabditis elegans C23H3.9a (C23H3.9) mRNA, complete cds Length = 1729 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 caacgtcatcttctaaatca 121 |||||||||||||||||||| Sbjct: 1700 caacgtcatcttctaaatca 1719
>ref|NM_061254.3| Caenorhabditis elegans C23H3.9c (C23H3.9) mRNA, complete cds Length = 1491 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 caacgtcatcttctaaatca 121 |||||||||||||||||||| Sbjct: 1231 caacgtcatcttctaaatca 1250
>ref|NM_001026809.1| Caenorhabditis elegans C23H3.9d (C23H3.9) mRNA, complete cds Length = 1715 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 caacgtcatcttctaaatca 121 |||||||||||||||||||| Sbjct: 1429 caacgtcatcttctaaatca 1448
>emb|BX649558.6| Zebrafish DNA sequence from clone DKEY-60B23 in linkage group 3, complete sequence Length = 84348 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 agctcagtgtcatctagaggtgac 343 |||||||||| ||||||||||||| Sbjct: 63751 agctcagtgtaatctagaggtgac 63774
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 agcacaacttttccactgga 438 |||||||||||||||||||| Sbjct: 11832155 agcacaacttttccactgga 11832136
>gb|AC158624.4| Mus musculus BAC RP23-299I16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 174188 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 caacttttccactggatgcc 442 |||||||||||||||||||| Sbjct: 102473 caacttttccactggatgcc 102492
>gb|AC153968.3| Mus musculus 10 BAC RP24-343C11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 151710 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 caacttttccactggatgcc 442 |||||||||||||||||||| Sbjct: 38173 caacttttccactggatgcc 38192
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 agcacaacttttccactgga 438 |||||||||||||||||||| Sbjct: 11831826 agcacaacttttccactgga 11831807 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,886,973 Number of Sequences: 3902068 Number of extensions: 4886973 Number of successful extensions: 108056 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107917 Number of HSP's gapped (non-prelim): 139 length of query: 624 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 601 effective length of database: 17,143,297,704 effective search space: 10303121920104 effective search space used: 10303121920104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)