ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23l03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
2dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
3dbj|AK110868.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
4emb|AL451064.6| Human DNA sequence from clone RP11-177G23 on chr... 44 0.54
5gb|AC131113.4| Mus musculus BAC clone RP24-155C13 from chromosom... 42 2.2
6gb|AC102677.9| Mus musculus chromosome 5, clone RP24-67M11, comp... 42 2.2
7gb|AC009779.18| Homo sapiens 12 BAC RP11-644F5 (Roswell Park Can... 42 2.2
8emb|BX005027.13| Zebrafish DNA sequence from clone DKEY-4C2 in l... 42 2.2
9gb|AC092174.5| Homo sapiens BAC clone RP13-522B14 from 7, comple... 40 8.5
10gb|U80453.1| Caenorhabditis elegans cosmid C23H3, complete sequence 40 8.5
11gb|U40952.3| Caenorhabditis elegans cosmid C03B1, complete sequence 40 8.5
12ref|XM_971344.1| PREDICTED: Tribolium castaneum hypothetical pro... 40 8.5
13gb|AC023170.10| Homo sapiens chromosome 10 clone RP11-373P23, co... 40 8.5
14gb|BC019583.1|BC019583 Homo sapiens, clone IMAGE:4499056, mRNA, ... 40 8.5
15ref|XM_682690.1| PREDICTED: Danio rerio similar to pleckstrin ho... 40 8.5
16ref|NM_061253.3| Caenorhabditis elegans C23H3.9b (C23H3.9) mRNA,... 40 8.5
17ref|NM_061252.3| Caenorhabditis elegans C23H3.9a (C23H3.9) mRNA,... 40 8.5
18ref|NM_061254.3| Caenorhabditis elegans C23H3.9c (C23H3.9) mRNA,... 40 8.5
19ref|NM_001026809.1| Caenorhabditis elegans C23H3.9d (C23H3.9) mR... 40 8.5
20emb|BX649558.6| Zebrafish DNA sequence from clone DKEY-60B23 in ... 40 8.5
21dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
22gb|AC158624.4| Mus musculus BAC RP23-299I16 (Roswell Park Cance... 40 8.5
23gb|AC153968.3| Mus musculus 10 BAC RP24-343C11 (Roswell Park Can... 40 8.5
24gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 51       gaacccaatgtcgttcctcagtcacaattgaagccgggagaa 92
                |||||||||| ||| ||||||||||||| || ||||||||||
Sbjct: 29080379 gaacccaatggcgtgcctcagtcacaatcgatgccgggagaa 29080420



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 364      cagcttgaagaacttgaagtcacagaac 391
                |||||||||||||||||| || ||||||
Sbjct: 29080695 cagcttgaagaacttgaactcgcagaac 29080722



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>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0596H10
          Length = 166570

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 51    gaacccaatgtcgttcctcagtcacaattgaagccgggagaa 92
             |||||||||| ||| ||||||||||||| || ||||||||||
Sbjct: 95366 gaacccaatggcgtgcctcagtcacaatcgatgccgggagaa 95407



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 364   cagcttgaagaacttgaagtcacagaac 391
             |||||||||||||||||| || ||||||
Sbjct: 95682 cagcttgaagaacttgaactcgcagaac 95709



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>dbj|AK110868.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-E03, full
            insert sequence
          Length = 1492

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 51   gaacccaatgtcgttcctcagtcacaattgaagccgggagaa 92
            |||||||||| ||| ||||||||||||| || ||||||||||
Sbjct: 1292 gaacccaatggcgtgcctcagtcacaatcgatgccgggagaa 1251



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 364 cagcttgaagaacttgaagtcacagaac 391
           |||||||||||||||||| || ||||||
Sbjct: 976 cagcttgaagaacttgaactcgcagaac 949



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>emb|AL451064.6| Human DNA sequence from clone RP11-177G23 on chromosome 6 Contains the
             the 5' end of the SH3BGRL2 gene for SH3 domain binding
             glutamic acid-rich protein-like 2 and a CpG island,
             complete sequence
          Length = 79743

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 292   tctgtaaagaaaccagctggaa 313
             ||||||||||||||||||||||
Sbjct: 40317 tctgtaaagaaaccagctggaa 40296



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>gb|AC131113.4| Mus musculus BAC clone RP24-155C13 from chromosome 3, complete sequence
          Length = 173268

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 64    ttcctcagtcacaattgaagc 84
             |||||||||||||||||||||
Sbjct: 47101 ttcctcagtcacaattgaagc 47121



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>gb|AC102677.9| Mus musculus chromosome 5, clone RP24-67M11, complete sequence
          Length = 167898

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 413   gagatgagcacaacttttccactgg 437
             |||||||||||| ||||||||||||
Sbjct: 51042 gagatgagcacatcttttccactgg 51066



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>gb|AC009779.18| Homo sapiens 12 BAC RP11-644F5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 192550

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    ttcctcttgccttcctccctc 274
              |||||||||||||||||||||
Sbjct: 165627 ttcctcttgccttcctccctc 165647



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>emb|BX005027.13| Zebrafish DNA sequence from clone DKEY-4C2 in linkage group 10,
             complete sequence
          Length = 241472

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 252   ctttcctcttgccttcctccc 272
             |||||||||||||||||||||
Sbjct: 44069 ctttcctcttgccttcctccc 44049



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>gb|AC092174.5| Homo sapiens BAC clone RP13-522B14 from 7, complete sequence
          Length = 158187

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 361    gttcagcttgaagaacttga 380
              ||||||||||||||||||||
Sbjct: 118174 gttcagcttgaagaacttga 118155



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>gb|U80453.1| Caenorhabditis elegans cosmid C23H3, complete sequence
          Length = 39721

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   caacgtcatcttctaaatca 121
             ||||||||||||||||||||
Sbjct: 27341 caacgtcatcttctaaatca 27322



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>gb|U40952.3| Caenorhabditis elegans cosmid C03B1, complete sequence
          Length = 42907

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     ttttattacatatacgatta 21
             ||||||||||||||||||||
Sbjct: 24128 ttttattacatatacgatta 24147



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>ref|XM_971344.1| PREDICTED: Tribolium castaneum hypothetical protein LOC662881
           (LOC662881), mRNA
          Length = 753

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 181 cttcctcttcctcgagctgtcggc 204
           ||||||||||||| ||||||||||
Sbjct: 388 cttcctcttcctccagctgtcggc 365



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>gb|AC023170.10| Homo sapiens chromosome 10 clone RP11-373P23, complete sequence
          Length = 195448

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 292    tctgtaaagaaaccagctgg 311
              ||||||||||||||||||||
Sbjct: 121481 tctgtaaagaaaccagctgg 121462



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>gb|BC019583.1|BC019583 Homo sapiens, clone IMAGE:4499056, mRNA, partial cds
          Length = 792

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 361 gttcagcttgaagaacttga 380
           ||||||||||||||||||||
Sbjct: 247 gttcagcttgaagaacttga 228



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>ref|XM_682690.1| PREDICTED: Danio rerio similar to pleckstrin homology-like domain,
            family B, member 3 (LOC559356), mRNA
          Length = 1478

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 519  tcaggatcttcccatggtag 538
            ||||||||||||||||||||
Sbjct: 1445 tcaggatcttcccatggtag 1464



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>ref|NM_061253.3| Caenorhabditis elegans C23H3.9b (C23H3.9) mRNA, complete cds
          Length = 1635

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 102  caacgtcatcttctaaatca 121
            ||||||||||||||||||||
Sbjct: 1606 caacgtcatcttctaaatca 1625



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>ref|NM_061252.3| Caenorhabditis elegans C23H3.9a (C23H3.9) mRNA, complete cds
          Length = 1729

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 102  caacgtcatcttctaaatca 121
            ||||||||||||||||||||
Sbjct: 1700 caacgtcatcttctaaatca 1719



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>ref|NM_061254.3| Caenorhabditis elegans C23H3.9c (C23H3.9) mRNA, complete cds
          Length = 1491

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 102  caacgtcatcttctaaatca 121
            ||||||||||||||||||||
Sbjct: 1231 caacgtcatcttctaaatca 1250



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>ref|NM_001026809.1| Caenorhabditis elegans C23H3.9d (C23H3.9) mRNA, complete cds
          Length = 1715

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 102  caacgtcatcttctaaatca 121
            ||||||||||||||||||||
Sbjct: 1429 caacgtcatcttctaaatca 1448



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>emb|BX649558.6| Zebrafish DNA sequence from clone DKEY-60B23 in linkage group 3,
             complete sequence
          Length = 84348

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 320   agctcagtgtcatctagaggtgac 343
             |||||||||| |||||||||||||
Sbjct: 63751 agctcagtgtaatctagaggtgac 63774



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 419      agcacaacttttccactgga 438
                ||||||||||||||||||||
Sbjct: 11832155 agcacaacttttccactgga 11832136



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>gb|AC158624.4| Mus musculus  BAC RP23-299I16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 174188

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 423    caacttttccactggatgcc 442
              ||||||||||||||||||||
Sbjct: 102473 caacttttccactggatgcc 102492



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>gb|AC153968.3| Mus musculus 10 BAC RP24-343C11 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 151710

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 423   caacttttccactggatgcc 442
             ||||||||||||||||||||
Sbjct: 38173 caacttttccactggatgcc 38192



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 419      agcacaacttttccactgga 438
                ||||||||||||||||||||
Sbjct: 11831826 agcacaacttttccactgga 11831807


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,886,973
Number of Sequences: 3902068
Number of extensions: 4886973
Number of successful extensions: 108056
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107917
Number of HSP's gapped (non-prelim): 139
length of query: 624
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 601
effective length of database: 17,143,297,704
effective search space: 10303121920104
effective search space used: 10303121920104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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