Clone Name | rbasd24a03 |
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Clone Library Name | barley_pub |
>gb|AF250935.1|AF250935 Hordeum vulgare germin F (GerF) gene, complete cds Length = 2689 Score = 819 bits (413), Expect = 0.0 Identities = 429/432 (99%), Gaps = 2/432 (0%) Strand = Plus / Minus Query: 1 aaaacaatcatcaccaacacattgctgacatgaatccgacaagaaaacatatcatgtcac 60 ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct: 2576 aaaacaatcatcaccaacacatt-ctgacatgaatccgacaagaaa-catatcatgtcac 2519 Query: 61 gcttcaaaaggaaaatgaaaattcacagctcacaaccatgcatgcatacgtattactaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2518 gcttcaaaaggaaaatgaaaattcacagctcacaaccatgcatgcatacgtattactaca 2459 Query: 121 tgccatttattctatatactagcattacatatgaactttccatatgcccagatgaaagag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2458 tgccatttattctatatactagcattacatatgaactttccatatgcccagatgaaagag 2399 Query: 181 agtatctagtagttgttattctcccagaactgagattgnagccagtgaatcagatccttc 240 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 2398 agtatctagtagttgttattctcccagaactgagattgaagccagtgaatcagatccttc 2339 Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2338 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 2279 Query: 301 gcattggcgatagaaataaccccagggttttggctgctgagcgaggacaaggcggctgct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2278 gcattggcgatagaaataaccccagggttttggctgctgagcgaggacaaggcggctgct 2219 Query: 361 ggcttgtcatgcgccaggttcatttggaagtgaatcattgcttttgggaatacgaataca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2218 ggcttgtcatgcgccaggttcatttggaagtgaatcattgcttttgggaatacgaataca 2159 Query: 421 tcacccttctta 432 |||||||||||| Sbjct: 2158 tcacccttctta 2147
>gb|AF250934.1|AF250934 Hordeum vulgare germin B (GerB) gene, complete cds Length = 2798 Score = 781 bits (394), Expect = 0.0 Identities = 425/432 (98%), Gaps = 4/432 (0%) Strand = Plus / Minus Query: 1 aaaacaatcatcaccaacacattgctgacatgaatccgacaagaaaacatatcatgtcac 60 ||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| Sbjct: 2685 aaaacaatcatcaccaacacatt-ctgacatgaatctgacaagaaa-catatcatgtcac 2628 Query: 61 gcttcaaaaggaaaatgaaaattcacagctcacaaccatgcatgcatacgtattactaca 120 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct: 2627 gcttcaaaaggaaaatgaaaa--cacagctcacaaccatgcatgcatacgtattattaca 2570 Query: 121 tgccatttattctatatactagcattacatatgaactttccatatgcccagatgaaagag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2569 tgccatttattctatatactagcattacatatgaactttccatatgcccagatgaaagag 2510 Query: 181 agtatctagtagttgttattctcccagaactgagattgnagccagtgaatcagatccttc 240 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 2509 agtatctagtagttgttattctcccagaactgagattgaagccagtgaatcagatccttc 2450 Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2449 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 2390 Query: 301 gcattggcgatagaaataaccccagggttttggctgctgagcgaggacaaggcggctgct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2389 gcattggcgatagaaataaccccagggttttggctgctgagcgaggacaaggcggctgct 2330 Query: 361 ggcttgtcatgcgccaggttcatttggaagtgaatcattgcttttgggaatacgaataca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2329 ggcttgtcatgcgccaggttcatttggaagtgaatcattgcttttgggaatacgaataca 2270 Query: 421 tcacccttctta 432 |||||||||||| Sbjct: 2269 tcacccttctta 2258
>gb|AF250936.1|AF250936 Hordeum vulgare germin D (GerD) gene, complete cds Length = 1272 Score = 371 bits (187), Expect = 1e-99 Identities = 228/242 (94%) Strand = Plus / Minus Query: 187 tagtagttgttattctcccagaactgagattgnagccagtgaatcagatccttctccacc 246 ||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct: 1251 tagtagttgttgttctcccagaactgagattggagccagtgtattagatccttctccacc 1192 Query: 247 tgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagactgcattg 306 |||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||| Sbjct: 1191 tgaaacgccgtggcgagaacatcatctgaaattggtggatttgagccaaacactgcattg 1132 Query: 307 gcgatagaaataaccccagggttttggctgctgagcgaggacaaggcggctgctggcttg 366 || |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 1131 gcaatagaaataaccccagggttttggctgctgagcgaggataacgcggctgctggcttg 1072 Query: 367 tcatgcgccaggttcatttggaagtgaatcattgcttttgggaatacgaatacatcaccc 426 ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1071 tcatgtgctaggttcatttggaagtggatcattgcttttgggaatacgaatacatcaccc 1012 Query: 427 tt 428 || Sbjct: 1011 tt 1010
>gb|AF250937.1|AF250937 Hordeum vulgare germin E (GerE) gene, partial cds Length = 783 Score = 369 bits (186), Expect = 5e-99 Identities = 230/245 (93%) Strand = Plus / Minus Query: 187 tagtagttgttattctcccagaactgagattgnagccagtgaatcagatccttctccacc 246 ||||||| |||||| ||||||||||||||||| ||||| | |||||| | ||| |||||| Sbjct: 645 tagtagtggttattttcccagaactgagattggagccaatcaatcagtttcttttccacc 586 Query: 247 tgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagactgcattg 306 ||||| |||||||| | ||||||||| ||||| ||||| ||||||||||||||||||||| Sbjct: 585 tgaaatgccgtggccaaaacatcatccgaaataggtgggtttgatccaaagactgcattg 526 Query: 307 gcgatagaaataaccccagggttttggctgctgagcgaggacaaggcggctgctggcttg 366 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 525 gcgatagaaataaccccagggttttggctgctgagcgaggataaggcggctgctggcttg 466 Query: 367 tcatgcgccaggttcatttggaagtgaatcattgcttttgggaatacgaatacatcaccc 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 465 tcatgcgccaggttcatttggaagtgaatcattgcttttgggaatacgaatacatcaccc 406 Query: 427 ttctt 431 ||||| Sbjct: 405 ttctt 401
>gb|AF005084.1|AF005084 Triticum aestivum oxalate oxidase mRNA, partial cds Length = 837 Score = 274 bits (138), Expect = 2e-70 Identities = 218/245 (88%) Strand = Plus / Minus Query: 187 tagtagttgttattctcccagaactgagattgnagccagtgaatcagatccttctccacc 246 ||||||| |||||||||||||||||||||||| ||||| | |||||| | ||| |||||| Sbjct: 667 tagtagtggttattctcccagaactgagattggagccaatcaatcagtttcttttccacc 608 Query: 247 tgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagactgcattg 306 |||||||||||||| | ||||||||| ||||| ||||| ||||||||||||||||||||| Sbjct: 607 tgaaacgccgtggccaaaacatcatccgaaatgggtgggtttgatccaaagactgcattg 548 Query: 307 gcgatagaaataaccccagggttttggctgctgagcgaggacaaggcggctgctggcttg 366 || ||||||||||| || ||||||||||||||||| || ||||| || |||||||||||| Sbjct: 547 gcaatagaaataactcctgggttttggctgctgagtgacgacaacgcagctgctggcttg 488 Query: 367 tcatgcgccaggttcatttggaagtgaatcattgcttttgggaatacgaatacatcaccc 426 |||||||| || |||||||||||||| |||||||| || ||||| || ||||| |||||| Sbjct: 487 tcatgcgctagattcatttggaagtggatcattgccttcgggaacacaaatacgtcaccc 428 Query: 427 ttctt 431 ||||| Sbjct: 427 ttctt 423
>ref|XM_480823.1| Oryza sativa (japonica cultivar-group), mRNA Length = 995 Score = 133 bits (67), Expect = 5e-28 Identities = 189/230 (82%) Strand = Plus / Minus Query: 199 ttctcccagaactgagattgnagccagtgaatcagatccttctccacctgaaacgccgtg 258 |||||||||||||||||||| ||||| | ||| || | ||| ||||||||||||||| || Sbjct: 750 ttctcccagaactgagattggagccaatcaattagcttcttttccacctgaaacgccttg 691 Query: 259 gctagaacatcatctgaaattggtggctttgatccaaagactgcattggcgatagaaata 318 | ||||||||||| || || ||||||| ||| ||||| || || | || |||| |||| Sbjct: 690 gtcagaacatcatcggagatcggtggctgtgagccaaacaccgcgcttgcaatagtaata 631 Query: 319 accccagggttttggctgctgagcgaggacaaggcggctgctggcttgtcatgcgccagg 378 || |||||||||||||| ||||| | || ||| |||||||||||||||| | ||| Sbjct: 630 actccagggttttggctactgagtgctgattgggcaactgctggcttgtcatgatctagg 571 Query: 379 ttcatttggaagtgaatcattgcttttgggaatacgaatacatcaccctt 428 ||||||||||||||||||||||| || ||||| || || || |||||||| Sbjct: 570 ttcatttggaagtgaatcattgccttagggaacacaaacacgtcaccctt 521
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 133 bits (67), Expect = 5e-28 Identities = 189/230 (82%) Strand = Plus / Plus Query: 199 ttctcccagaactgagattgnagccagtgaatcagatccttctccacctgaaacgccgtg 258 |||||||||||||||||||| ||||| | ||| || | ||| ||||||||||||||| || Sbjct: 7988306 ttctcccagaactgagattggagccaatcaattagcttcttttccacctgaaacgccttg 7988365 Query: 259 gctagaacatcatctgaaattggtggctttgatccaaagactgcattggcgatagaaata 318 | ||||||||||| || || ||||||| ||| ||||| || || | || |||| |||| Sbjct: 7988366 gtcagaacatcatcggagatcggtggctgtgagccaaacaccgcgcttgcaatagtaata 7988425 Query: 319 accccagggttttggctgctgagcgaggacaaggcggctgctggcttgtcatgcgccagg 378 || |||||||||||||| ||||| | || ||| |||||||||||||||| | ||| Sbjct: 7988426 actccagggttttggctactgagtgctgattgggcaactgctggcttgtcatgatctagg 7988485 Query: 379 ttcatttggaagtgaatcattgcttttgggaatacgaatacatcaccctt 428 ||||||||||||||||||||||| || ||||| || || || |||||||| Sbjct: 7988486 ttcatttggaagtgaatcattgccttagggaacacaaacacgtcaccctt 7988535 Score = 85.7 bits (43), Expect = 1e-13 Identities = 117/142 (82%) Strand = Plus / Minus Query: 200 tctcccagaactgagattgnagccagtgaatcagatccttctccacctgaaacgccgtgg 259 |||||||||||||||||| ||||| | ||||| | ||| ||||| ||||| ||| ||| Sbjct: 5223429 tctcccagaactgagatttgagccaatcaatcaccttcttttccacttgaaatgccttgg 5223370 Query: 260 ctagaacatcatctgaaattggtggctttgatccaaagactgcattggcgatagaaataa 319 ||||||||||| || |||||||||||||||||||| || ||| | || || | ||||| Sbjct: 5223369 tcagaacatcatcagagattggtggctttgatccaaacaccgcactagcaattgtaataa 5223310 Query: 320 ccccagggttttggctgctgag 341 | ||||||||||| ||| |||| Sbjct: 5223309 ctccagggttttgactgttgag 5223288 Score = 73.8 bits (37), Expect = 4e-10 Identities = 123/152 (80%) Strand = Plus / Minus Query: 187 tagtagttgttattctcccagaactgagattgnagccagtgaatcagatccttctccacc 246 ||||||| ||| |||||||||||||||| || ||||||| || | ||||||| || Sbjct: 5228374 tagtagtggttgttctcccagaactgagcctggagccagtctatagtacccttctcaact 5228315 Query: 247 tgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagactgcattg 306 ||||| ||| | |||| ||| ||||| || |||||||||||||||||||| |||||||| Sbjct: 5228314 tgaaatgccttcgctaaaacttcatccgagattggtggctttgatccaaacactgcattt 5228255 Query: 307 gcgatagaaataaccccagggttttggctgct 338 || || | ||| | || |||||||||||||| Sbjct: 5228254 gcaatggtaatggcaccggggttttggctgct 5228223 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 267 atcatctgaaattggtggctttgatccaaagactgcattggcgatagaaataaccccagg 326 ||||||||| || |||||||||||||| || |||||||| || || | |||| ||||||| Sbjct: 5237028 atcatctgagatcggtggctttgatccgaacactgcatttgcaatggtaatagccccagg 5236969 Query: 327 gttttggctgct 338 |||||||||||| Sbjct: 5236968 gttttggctgct 5236957 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 376 aggttcatttggaagtgaatcattgcttttgggaatacgaatacatcaccctt 428 ||||||||||| |||||||||||||| || ||||| ||||| ||||||||||| Sbjct: 5216576 aggttcatttgaaagtgaatcattgccttagggaacacgaacacatcaccctt 5216524 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 268 tcatctgaaattggtggctttgatccaaagactgcattggcgatagaaataaccccaggg 327 |||||||| ||||||||||| |||||||| |||||||| || |||| || || |||||| Sbjct: 5248804 tcatctgagattggtggcttcgatccaaaaactgcatttgcaatagtgatgacaccaggg 5248745 Query: 328 ttttggctgct 338 ||||| ||||| Sbjct: 5248744 ttttgactgct 5248734 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 271 tctgaaattggtggctttgatccaaagactgcattggcgatagaaataaccccagggttt 330 |||||||| |||||||||||||| || |||||||| || |||| || | ||||||||| Sbjct: 5254700 tctgaaatcggtggctttgatccgaacactgcatttgcaatagtgatggcaccagggttt 5254641 Query: 331 tggctgct 338 |||||||| Sbjct: 5254640 tggctgct 5254633 Score = 54.0 bits (27), Expect = 4e-04 Identities = 78/95 (82%) Strand = Plus / Minus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||||||||| ||| |||| | || |||||| || || ||||| ||||||| || ||| Sbjct: 5181323 tccacctgaaatgccttggccaaaatatcatccgagatcggtgggtttgatctgaacact 5181264 Query: 301 gcattggcgatagaaataaccccagggttttggct 335 ||||| || |||| ||||| |||||| |||||||| Sbjct: 5181263 gcatttgcaatagtaataatcccaggattttggct 5181229 Score = 46.1 bits (23), Expect = 0.094 Identities = 32/35 (91%) Strand = Plus / Minus Query: 271 tctgaaattggtggctttgatccaaagactgcatt 305 |||||||| |||||||||||||| || |||||||| Sbjct: 5243225 tctgaaatcggtggctttgatccgaacactgcatt 5243191 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 406 gggaatacgaatacatcaccctt 428 ||||||||||||||||||||||| Sbjct: 5243090 gggaatacgaatacatcaccctt 5243068 Score = 46.1 bits (23), Expect = 0.094 Identities = 47/55 (85%) Strand = Plus / Minus Query: 236 ccttctccacctgaaacgccgtggctagaacatcatctgaaattggtggctttga 290 ||||||| |||||||| ||| | || | ||| |||||||| |||||||||||||| Sbjct: 5233532 ccttctcaacctgaaatgcctttgccaaaacttcatctgagattggtggctttga 5233478 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 187 tagtagttgttattctcccagaactgag 214 ||||||| ||| |||||||||||||||| Sbjct: 5248885 tagtagtggttgttctcccagaactgag 5248858
>dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0461A06 Length = 136384 Score = 133 bits (67), Expect = 5e-28 Identities = 189/230 (82%) Strand = Plus / Plus Query: 199 ttctcccagaactgagattgnagccagtgaatcagatccttctccacctgaaacgccgtg 258 |||||||||||||||||||| ||||| | ||| || | ||| ||||||||||||||| || Sbjct: 60476 ttctcccagaactgagattggagccaatcaattagcttcttttccacctgaaacgccttg 60535 Query: 259 gctagaacatcatctgaaattggtggctttgatccaaagactgcattggcgatagaaata 318 | ||||||||||| || || ||||||| ||| ||||| || || | || |||| |||| Sbjct: 60536 gtcagaacatcatcggagatcggtggctgtgagccaaacaccgcgcttgcaatagtaata 60595 Query: 319 accccagggttttggctgctgagcgaggacaaggcggctgctggcttgtcatgcgccagg 378 || |||||||||||||| ||||| | || ||| |||||||||||||||| | ||| Sbjct: 60596 actccagggttttggctactgagtgctgattgggcaactgctggcttgtcatgatctagg 60655 Query: 379 ttcatttggaagtgaatcattgcttttgggaatacgaatacatcaccctt 428 ||||||||||||||||||||||| || ||||| || || || |||||||| Sbjct: 60656 ttcatttggaagtgaatcattgccttagggaacacaaacacgtcaccctt 60705
>dbj|AK059812.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-B04, full insert sequence Length = 995 Score = 133 bits (67), Expect = 5e-28 Identities = 189/230 (82%) Strand = Plus / Minus Query: 199 ttctcccagaactgagattgnagccagtgaatcagatccttctccacctgaaacgccgtg 258 |||||||||||||||||||| ||||| | ||| || | ||| ||||||||||||||| || Sbjct: 750 ttctcccagaactgagattggagccaatcaattagcttcttttccacctgaaacgccttg 691 Query: 259 gctagaacatcatctgaaattggtggctttgatccaaagactgcattggcgatagaaata 318 | ||||||||||| || || ||||||| ||| ||||| || || | || |||| |||| Sbjct: 690 gtcagaacatcatcggagatcggtggctgtgagccaaacaccgcgcttgcaatagtaata 631 Query: 319 accccagggttttggctgctgagcgaggacaaggcggctgctggcttgtcatgcgccagg 378 || |||||||||||||| ||||| | || ||| |||||||||||||||| | ||| Sbjct: 630 actccagggttttggctactgagtgctgattgggcaactgctggcttgtcatgatctagg 571 Query: 379 ttcatttggaagtgaatcattgcttttgggaatacgaatacatcaccctt 428 ||||||||||||||||||||||| || ||||| || || || |||||||| Sbjct: 570 ttcatttggaagtgaatcattgccttagggaacacaaacacgtcaccctt 521
>emb|X93171.1|HVOXLP H.vulgare mRNA for oxalate oxidase-like protein Length = 904 Score = 91.7 bits (46), Expect = 2e-15 Identities = 120/145 (82%) Strand = Plus / Minus Query: 199 ttctcccagaactgagattgnagccagtgaatcagatccttctccacctgaaacgccgtg 258 |||||||||||||||| || ||||||| || || ||| ||||||||||||||| || Sbjct: 712 ttctcccagaactgagcctggagccagtctatagtattcttttccacctgaaacgccttg 653 Query: 259 gctagaacatcatctgaaattggtggctttgatccaaagactgcattggcgatagaaata 318 || |||||||||||||| |||| ||| | ||| ||||| ||||||||||| || | ||| Sbjct: 652 gcaagaacatcatctgatattgctgggtctgacccaaacactgcattggcaattgtgata 593 Query: 319 accccagggttttggctgctgagcg 343 |||| ||||| ||||||||||||| Sbjct: 592 gcccctgggttctggctgctgagcg 568
>gb|AF493981.1| Hordeum vulgare germin-like 12 (GL12) gene, complete cds Length = 2742 Score = 91.7 bits (46), Expect = 2e-15 Identities = 120/145 (82%) Strand = Plus / Minus Query: 199 ttctcccagaactgagattgnagccagtgaatcagatccttctccacctgaaacgccgtg 258 |||||||||||||||| || ||||||| || || ||| ||||||||||||||| || Sbjct: 2594 ttctcccagaactgagcctggagccagtctatagtattcttttccacctgaaacgccttg 2535 Query: 259 gctagaacatcatctgaaattggtggctttgatccaaagactgcattggcgatagaaata 318 || |||||||||||||| |||| ||| | ||| ||||| ||||||||||| || | ||| Sbjct: 2534 gcaagaacatcatctgatattgctgggtctgacccaaacactgcattggcaattgtgata 2475 Query: 319 accccagggttttggctgctgagcg 343 |||| ||||| ||||||||||||| Sbjct: 2474 gcccctgggttctggctgctgagcg 2450
>gb|AF493980.1| Hordeum vulgare germin-like 8 (GL8) gene, complete cds Length = 2741 Score = 91.7 bits (46), Expect = 2e-15 Identities = 120/145 (82%) Strand = Plus / Minus Query: 199 ttctcccagaactgagattgnagccagtgaatcagatccttctccacctgaaacgccgtg 258 |||||||||||||||| || ||||||| || || ||| ||||||||||||||| || Sbjct: 2594 ttctcccagaactgagcctggagccagtctatagtattcttttccacctgaaacgccttg 2535 Query: 259 gctagaacatcatctgaaattggtggctttgatccaaagactgcattggcgatagaaata 318 || |||||||||||||| |||| ||| | ||| ||||| ||||||||||| || | ||| Sbjct: 2534 gcaagaacatcatctgatattgctgggtctgacccaaacactgcattggcaattgtgata 2475 Query: 319 accccagggttttggctgctgagcg 343 |||| ||||| ||||||||||||| Sbjct: 2474 gcccctgggttctggctgctgagcg 2450
>ref|XM_480453.1| Oryza sativa (japonica cultivar-group), mRNA Length = 893 Score = 85.7 bits (43), Expect = 1e-13 Identities = 117/142 (82%) Strand = Plus / Minus Query: 200 tctcccagaactgagattgnagccagtgaatcagatccttctccacctgaaacgccgtgg 259 |||||||||||||||||| ||||| | ||||| | ||| ||||| ||||| ||| ||| Sbjct: 717 tctcccagaactgagatttgagccaatcaatcaccttcttttccacttgaaatgccttgg 658 Query: 260 ctagaacatcatctgaaattggtggctttgatccaaagactgcattggcgatagaaataa 319 ||||||||||| || |||||||||||||||||||| || ||| | || || | ||||| Sbjct: 657 tcagaacatcatcagagattggtggctttgatccaaacaccgcactagcaattgtaataa 598 Query: 320 ccccagggttttggctgctgag 341 | ||||||||||| ||| |||| Sbjct: 597 ctccagggttttgactgttgag 576
>dbj|AP005531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1099H05 Length = 186036 Score = 85.7 bits (43), Expect = 1e-13 Identities = 117/142 (82%) Strand = Plus / Minus Query: 200 tctcccagaactgagattgnagccagtgaatcagatccttctccacctgaaacgccgtgg 259 |||||||||||||||||| ||||| | ||||| | ||| ||||| ||||| ||| ||| Sbjct: 91785 tctcccagaactgagatttgagccaatcaatcaccttcttttccacttgaaatgccttgg 91726 Query: 260 ctagaacatcatctgaaattggtggctttgatccaaagactgcattggcgatagaaataa 319 ||||||||||| || |||||||||||||||||||| || ||| | || || | ||||| Sbjct: 91725 tcagaacatcatcagagattggtggctttgatccaaacaccgcactagcaattgtaataa 91666 Query: 320 ccccagggttttggctgctgag 341 | ||||||||||| ||| |||| Sbjct: 91665 ctccagggttttgactgttgag 91644 Score = 73.8 bits (37), Expect = 4e-10 Identities = 123/152 (80%) Strand = Plus / Minus Query: 187 tagtagttgttattctcccagaactgagattgnagccagtgaatcagatccttctccacc 246 ||||||| ||| |||||||||||||||| || ||||||| || | ||||||| || Sbjct: 96730 tagtagtggttgttctcccagaactgagcctggagccagtctatagtacccttctcaact 96671 Query: 247 tgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagactgcattg 306 ||||| ||| | |||| ||| ||||| || |||||||||||||||||||| |||||||| Sbjct: 96670 tgaaatgccttcgctaaaacttcatccgagattggtggctttgatccaaacactgcattt 96611 Query: 307 gcgatagaaataaccccagggttttggctgct 338 || || | ||| | || |||||||||||||| Sbjct: 96610 gcaatggtaatggcaccggggttttggctgct 96579 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 267 atcatctgaaattggtggctttgatccaaagactgcattggcgatagaaataaccccagg 326 ||||||||| || |||||||||||||| || |||||||| || || | |||| ||||||| Sbjct: 105384 atcatctgagatcggtggctttgatccgaacactgcatttgcaatggtaatagccccagg 105325 Query: 327 gttttggctgct 338 |||||||||||| Sbjct: 105324 gttttggctgct 105313 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 376 aggttcatttggaagtgaatcattgcttttgggaatacgaatacatcaccctt 428 ||||||||||| |||||||||||||| || ||||| ||||| ||||||||||| Sbjct: 84932 aggttcatttgaaagtgaatcattgccttagggaacacgaacacatcaccctt 84880 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 268 tcatctgaaattggtggctttgatccaaagactgcattggcgatagaaataaccccaggg 327 |||||||| ||||||||||| |||||||| |||||||| || |||| || || |||||| Sbjct: 117160 tcatctgagattggtggcttcgatccaaaaactgcatttgcaatagtgatgacaccaggg 117101 Query: 328 ttttggctgct 338 ||||| ||||| Sbjct: 117100 ttttgactgct 117090 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 271 tctgaaattggtggctttgatccaaagactgcattggcgatagaaataaccccagggttt 330 |||||||| |||||||||||||| || |||||||| || |||| || | ||||||||| Sbjct: 123056 tctgaaatcggtggctttgatccgaacactgcatttgcaatagtgatggcaccagggttt 122997 Query: 331 tggctgct 338 |||||||| Sbjct: 122996 tggctgct 122989 Score = 54.0 bits (27), Expect = 4e-04 Identities = 78/95 (82%) Strand = Plus / Minus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||||||||| ||| |||| | || |||||| || || ||||| ||||||| || ||| Sbjct: 49679 tccacctgaaatgccttggccaaaatatcatccgagatcggtgggtttgatctgaacact 49620 Query: 301 gcattggcgatagaaataaccccagggttttggct 335 ||||| || |||| ||||| |||||| |||||||| Sbjct: 49619 gcatttgcaatagtaataatcccaggattttggct 49585 Score = 46.1 bits (23), Expect = 0.094 Identities = 32/35 (91%) Strand = Plus / Minus Query: 271 tctgaaattggtggctttgatccaaagactgcatt 305 |||||||| |||||||||||||| || |||||||| Sbjct: 111581 tctgaaatcggtggctttgatccgaacactgcatt 111547 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 406 gggaatacgaatacatcaccctt 428 ||||||||||||||||||||||| Sbjct: 111446 gggaatacgaatacatcaccctt 111424 Score = 46.1 bits (23), Expect = 0.094 Identities = 47/55 (85%) Strand = Plus / Minus Query: 236 ccttctccacctgaaacgccgtggctagaacatcatctgaaattggtggctttga 290 ||||||| |||||||| ||| | || | ||| |||||||| |||||||||||||| Sbjct: 101888 ccttctcaacctgaaatgcctttgccaaaacttcatctgagattggtggctttga 101834 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 187 tagtagttgttattctcccagaactgag 214 ||||||| ||| |||||||||||||||| Sbjct: 117241 tagtagtggttgttctcccagaactgag 117214
>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0610E02 Length = 135816 Score = 85.7 bits (43), Expect = 1e-13 Identities = 117/142 (82%) Strand = Plus / Minus Query: 200 tctcccagaactgagattgnagccagtgaatcagatccttctccacctgaaacgccgtgg 259 |||||||||||||||||| ||||| | ||||| | ||| ||||| ||||| ||| ||| Sbjct: 15017 tctcccagaactgagatttgagccaatcaatcaccttcttttccacttgaaatgccttgg 14958 Query: 260 ctagaacatcatctgaaattggtggctttgatccaaagactgcattggcgatagaaataa 319 ||||||||||| || |||||||||||||||||||| || ||| | || || | ||||| Sbjct: 14957 tcagaacatcatcagagattggtggctttgatccaaacaccgcactagcaattgtaataa 14898 Query: 320 ccccagggttttggctgctgag 341 | ||||||||||| ||| |||| Sbjct: 14897 ctccagggttttgactgttgag 14876 Score = 73.8 bits (37), Expect = 4e-10 Identities = 123/152 (80%) Strand = Plus / Minus Query: 187 tagtagttgttattctcccagaactgagattgnagccagtgaatcagatccttctccacc 246 ||||||| ||| |||||||||||||||| || ||||||| || | ||||||| || Sbjct: 19962 tagtagtggttgttctcccagaactgagcctggagccagtctatagtacccttctcaact 19903 Query: 247 tgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagactgcattg 306 ||||| ||| | |||| ||| ||||| || |||||||||||||||||||| |||||||| Sbjct: 19902 tgaaatgccttcgctaaaacttcatccgagattggtggctttgatccaaacactgcattt 19843 Query: 307 gcgatagaaataaccccagggttttggctgct 338 || || | ||| | || |||||||||||||| Sbjct: 19842 gcaatggtaatggcaccggggttttggctgct 19811 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 267 atcatctgaaattggtggctttgatccaaagactgcattggcgatagaaataaccccagg 326 ||||||||| || |||||||||||||| || |||||||| || || | |||| ||||||| Sbjct: 28616 atcatctgagatcggtggctttgatccgaacactgcatttgcaatggtaatagccccagg 28557 Query: 327 gttttggctgct 338 |||||||||||| Sbjct: 28556 gttttggctgct 28545 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 376 aggttcatttggaagtgaatcattgcttttgggaatacgaatacatcaccctt 428 ||||||||||| |||||||||||||| || ||||| ||||| ||||||||||| Sbjct: 8164 aggttcatttgaaagtgaatcattgccttagggaacacgaacacatcaccctt 8112 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 268 tcatctgaaattggtggctttgatccaaagactgcattggcgatagaaataaccccaggg 327 |||||||| ||||||||||| |||||||| |||||||| || |||| || || |||||| Sbjct: 40392 tcatctgagattggtggcttcgatccaaaaactgcatttgcaatagtgatgacaccaggg 40333 Query: 328 ttttggctgct 338 ||||| ||||| Sbjct: 40332 ttttgactgct 40322 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 271 tctgaaattggtggctttgatccaaagactgcattggcgatagaaataaccccagggttt 330 |||||||| |||||||||||||| || |||||||| || |||| || | ||||||||| Sbjct: 46288 tctgaaatcggtggctttgatccgaacactgcatttgcaatagtgatggcaccagggttt 46229 Query: 331 tggctgct 338 |||||||| Sbjct: 46228 tggctgct 46221 Score = 46.1 bits (23), Expect = 0.094 Identities = 32/35 (91%) Strand = Plus / Minus Query: 271 tctgaaattggtggctttgatccaaagactgcatt 305 |||||||| |||||||||||||| || |||||||| Sbjct: 34813 tctgaaatcggtggctttgatccgaacactgcatt 34779 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 406 gggaatacgaatacatcaccctt 428 ||||||||||||||||||||||| Sbjct: 34678 gggaatacgaatacatcaccctt 34656 Score = 46.1 bits (23), Expect = 0.094 Identities = 47/55 (85%) Strand = Plus / Minus Query: 236 ccttctccacctgaaacgccgtggctagaacatcatctgaaattggtggctttga 290 ||||||| |||||||| ||| | || | ||| |||||||| |||||||||||||| Sbjct: 25120 ccttctcaacctgaaatgcctttgccaaaacttcatctgagattggtggctttga 25066 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 187 tagtagttgttattctcccagaactgag 214 ||||||| ||| |||||||||||||||| Sbjct: 40473 tagtagtggttgttctcccagaactgag 40446
>dbj|AK059338.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-B02, full insert sequence Length = 893 Score = 85.7 bits (43), Expect = 1e-13 Identities = 117/142 (82%) Strand = Plus / Minus Query: 200 tctcccagaactgagattgnagccagtgaatcagatccttctccacctgaaacgccgtgg 259 |||||||||||||||||| ||||| | ||||| | ||| ||||| ||||| ||| ||| Sbjct: 717 tctcccagaactgagatttgagccaatcaatcaccttcttttccacttgaaatgccttgg 658 Query: 260 ctagaacatcatctgaaattggtggctttgatccaaagactgcattggcgatagaaataa 319 ||||||||||| || |||||||||||||||||||| || ||| | || || | ||||| Sbjct: 657 tcagaacatcatcagagattggtggctttgatccaaacaccgcactagcaattgtaataa 598 Query: 320 ccccagggttttggctgctgag 341 | ||||||||||| ||| |||| Sbjct: 597 ctccagggttttgactgttgag 576
>emb|AJ237943.1|TAE237943 Triticum aestivum mRNA for germin-like protein 2b Length = 948 Score = 83.8 bits (42), Expect = 4e-13 Identities = 128/157 (81%) Strand = Plus / Minus Query: 187 tagtagttgttattctcccagaactgagattgnagccagtgaatcagatccttctccacc 246 ||||||| ||| |||||||||||||||| || || ||| ||| || ||| |||||| Sbjct: 757 tagtagtggttgttctcccagaactgagcctggagatagtcaattgtattcttttccacc 698 Query: 247 tgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagactgcattg 306 ||||| ||| |||| |||||||||||||| |||||||| | ||| ||||| ||||||||| Sbjct: 697 tgaaatgccttggcaagaacatcatctgatattggtgggtctgacccaaacactgcattg 638 Query: 307 gcgatagaaataaccccagggttttggctgctgagcg 343 || || | ||| |||| ||||| |||||||| |||| Sbjct: 637 gcaattgtgatagcccctgggttctggctgcttagcg 601
>gb|AF032971.1|AF032971 Oryza sativa germin-like protein 1 (GER1) mRNA, complete cds Length = 869 Score = 77.8 bits (39), Expect = 3e-11 Identities = 116/142 (81%) Strand = Plus / Minus Query: 200 tctcccagaactgagattgnagccagtgaatcagatccttctccacctgaaacgccgtgg 259 ||||||| |||||||||| ||||| | ||||| | ||| ||||| ||||| ||| ||| Sbjct: 691 tctcccaaaactgagatttgagccaatcaatcaccttcttttccacttgaaatgccttgg 632 Query: 260 ctagaacatcatctgaaattggtggctttgatccaaagactgcattggcgatagaaataa 319 ||||||||||| || |||||||||||||||||||| || ||| | || || | ||||| Sbjct: 631 tcagaacatcatcagagattggtggctttgatccaaacaccgcactagcaattgtaataa 572 Query: 320 ccccagggttttggctgctgag 341 | ||||||||||| ||| |||| Sbjct: 571 ctccagggttttgactgttgag 550
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 75.8 bits (38), Expect = 1e-10 Identities = 83/98 (84%) Strand = Plus / Plus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||| ||||| ||| | || ||||||||||||||||||||||| | ||||||||| ||| Sbjct: 2698490 tccacttgaaatgccttagcaagaacatcatctgaaattggtggatgtgatccaaatact 2698549 Query: 301 gcattggcgatagaaataaccccagggttttggctgct 338 ||||| || || | ||| ||||||| ||||||||||| Sbjct: 2698550 gcattagcaatggtaattgccccaggattttggctgct 2698587 Score = 69.9 bits (35), Expect = 6e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||| ||||| ||| | || ||||||||||| || |||||||| ||||||||||| ||| Sbjct: 2695512 tccacttgaaatgccttagcaagaacatcatccgagattggtggatttgatccaaatact 2695571 Query: 301 gcattggcgatagaaataaccccagggttttggct 335 ||||| || || | ||| |||||||||||||||| Sbjct: 2695572 gcattagcaatggtaatcgccccagggttttggct 2695606 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||| ||||| ||| | || ||||||||||| || |||||||| ||||||||||| ||| Sbjct: 2688054 tccacttgaaatgccttagcaagaacatcatccgagattggtggatttgatccaaatact 2688113 Query: 301 gcatt 305 ||||| Sbjct: 2688114 gcatt 2688118 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Plus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||||||||| ||| | || ||||| ||||| || ||||||| ||||||||||| ||| Sbjct: 2691739 tccacctgaaatgccttagcaagaacgtcatccgagattggtgaatttgatccaaatact 2691798 Query: 301 gcattggcgatagaaataaccccagggttttggctgct 338 ||||| || || | ||| | |||||||| |||||||| Sbjct: 2691799 gcattagcaatggtaatcgctccagggttctggctgct 2691836
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 75.8 bits (38), Expect = 1e-10 Identities = 83/98 (84%) Strand = Plus / Plus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||| ||||| ||| | || ||||||||||||||||||||||| | ||||||||| ||| Sbjct: 2698434 tccacttgaaatgccttagcaagaacatcatctgaaattggtggatgtgatccaaatact 2698493 Query: 301 gcattggcgatagaaataaccccagggttttggctgct 338 ||||| || || | ||| ||||||| ||||||||||| Sbjct: 2698494 gcattagcaatggtaattgccccaggattttggctgct 2698531 Score = 69.9 bits (35), Expect = 6e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||| ||||| ||| | || ||||||||||| || |||||||| ||||||||||| ||| Sbjct: 2695456 tccacttgaaatgccttagcaagaacatcatccgagattggtggatttgatccaaatact 2695515 Query: 301 gcattggcgatagaaataaccccagggttttggct 335 ||||| || || | ||| |||||||||||||||| Sbjct: 2695516 gcattagcaatggtaatcgccccagggttttggct 2695550 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||| ||||| ||| | || ||||||||||| || |||||||| ||||||||||| ||| Sbjct: 2687998 tccacttgaaatgccttagcaagaacatcatccgagattggtggatttgatccaaatact 2688057 Query: 301 gcatt 305 ||||| Sbjct: 2688058 gcatt 2688062 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Plus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||||||||| ||| | || ||||| ||||| || ||||||| ||||||||||| ||| Sbjct: 2691683 tccacctgaaatgccttagcaagaacgtcatccgagattggtgaatttgatccaaatact 2691742 Query: 301 gcattggcgatagaaataaccccagggttttggctgct 338 ||||| || || | ||| | |||||||| |||||||| Sbjct: 2691743 gcattagcaatggtaatcgctccagggttctggctgct 2691780
>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151878 Score = 75.8 bits (38), Expect = 1e-10 Identities = 83/98 (84%) Strand = Plus / Plus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||| ||||| ||| | || ||||||||||||||||||||||| | ||||||||| ||| Sbjct: 67416 tccacttgaaatgccttagcaagaacatcatctgaaattggtggatgtgatccaaatact 67475 Query: 301 gcattggcgatagaaataaccccagggttttggctgct 338 ||||| || || | ||| ||||||| ||||||||||| Sbjct: 67476 gcattagcaatggtaattgccccaggattttggctgct 67513 Score = 69.9 bits (35), Expect = 6e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||| ||||| ||| | || ||||||||||| || |||||||| ||||||||||| ||| Sbjct: 64438 tccacttgaaatgccttagcaagaacatcatccgagattggtggatttgatccaaatact 64497 Query: 301 gcattggcgatagaaataaccccagggttttggct 335 ||||| || || | ||| |||||||||||||||| Sbjct: 64498 gcattagcaatggtaatcgccccagggttttggct 64532 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||| ||||| ||| | || ||||||||||| || |||||||| ||||||||||| ||| Sbjct: 56980 tccacttgaaatgccttagcaagaacatcatccgagattggtggatttgatccaaatact 57039 Query: 301 gcatt 305 ||||| Sbjct: 57040 gcatt 57044 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Plus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||||||||| ||| | || ||||| ||||| || ||||||| ||||||||||| ||| Sbjct: 60665 tccacctgaaatgccttagcaagaacgtcatccgagattggtgaatttgatccaaatact 60724 Query: 301 gcattggcgatagaaataaccccagggttttggctgct 338 ||||| || || | ||| | |||||||| |||||||| Sbjct: 60725 gcattagcaatggtaatcgctccagggttctggctgct 60762
>ref|XM_480454.1| Oryza sativa (japonica cultivar-group), mRNA Length = 675 Score = 73.8 bits (37), Expect = 4e-10 Identities = 123/152 (80%) Strand = Plus / Minus Query: 187 tagtagttgttattctcccagaactgagattgnagccagtgaatcagatccttctccacc 246 ||||||| ||| |||||||||||||||| || ||||||| || | ||||||| || Sbjct: 674 tagtagtggttgttctcccagaactgagcctggagccagtctatagtacccttctcaact 615 Query: 247 tgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagactgcattg 306 ||||| ||| | |||| ||| ||||| || |||||||||||||||||||| |||||||| Sbjct: 614 tgaaatgccttcgctaaaacttcatccgagattggtggctttgatccaaacactgcattt 555 Query: 307 gcgatagaaataaccccagggttttggctgct 338 || || | ||| | || |||||||||||||| Sbjct: 554 gcaatggtaatggcaccggggttttggctgct 523
>ref|XM_480457.1| Oryza sativa (japonica cultivar-group), mRNA Length = 982 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 267 atcatctgaaattggtggctttgatccaaagactgcattggcgatagaaataaccccagg 326 ||||||||| || |||||||||||||| || |||||||| || || | |||| ||||||| Sbjct: 698 atcatctgagatcggtggctttgatccgaacactgcatttgcaatggtaatagccccagg 639 Query: 327 gttttggctgct 338 |||||||||||| Sbjct: 638 gttttggctgct 627
>dbj|AK061029.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-G10, full insert sequence Length = 982 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 267 atcatctgaaattggtggctttgatccaaagactgcattggcgatagaaataaccccagg 326 ||||||||| || |||||||||||||| || |||||||| || || | |||| ||||||| Sbjct: 698 atcatctgagatcggtggctttgatccgaacactgcatttgcaatggtaatagccccagg 639 Query: 327 gttttggctgct 338 |||||||||||| Sbjct: 638 gttttggctgct 627
>gb|AF032976.1|AF032976 Oryza sativa germin-like protein 6 (GER6) mRNA, complete cds Length = 967 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 267 atcatctgaaattggtggctttgatccaaagactgcattggcgatagaaataaccccagg 326 ||||||||| || |||||||||||||| || |||||||| || || | |||| ||||||| Sbjct: 682 atcatctgagatcggtggctttgatccgaacactgcatttgcaatggtaatagccccagg 623 Query: 327 gttttggctgct 338 |||||||||||| Sbjct: 622 gttttggctgct 611
>emb|AJ237942.1|TAE237942 Triticum aestivum mRNA for germin-like protein 2a Length = 930 Score = 69.9 bits (35), Expect = 6e-09 Identities = 86/103 (83%) Strand = Plus / Minus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||||||||||||| |||| ||||||||||| || ||| |||| | ||| ||||| || Sbjct: 681 tccacctgaaacgccttggcaagaacatcatcggatatttgtgggtctgacccaaacacc 622 Query: 301 gcattggcgatagaaataaccccagggttttggctgctgagcg 343 |||||||| || | ||| |||| ||||| ||||||||||||| Sbjct: 621 gcattggcaattgtgatagcccctgggttctggctgctgagcg 579
>ref|XM_480452.1| Oryza sativa (japonica cultivar-group), mRNA Length = 882 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 376 aggttcatttggaagtgaatcattgcttttgggaatacgaatacatcaccctt 428 ||||||||||| |||||||||||||| || ||||| ||||| ||||||||||| Sbjct: 524 aggttcatttgaaagtgaatcattgccttagggaacacgaacacatcaccctt 472
>dbj|AK059781.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-C06, full insert sequence Length = 882 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 376 aggttcatttggaagtgaatcattgcttttgggaatacgaatacatcaccctt 428 ||||||||||| |||||||||||||| || ||||| ||||| ||||||||||| Sbjct: 524 aggttcatttgaaagtgaatcattgccttagggaacacgaacacatcaccctt 472
>gb|AF042489.1|AF042489 Oryza sativa germin-like protein 16 (glp16) mRNA, complete cds Length = 912 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 267 atcatctgaaattggtggctttgatccaaagactgcattggcgatagaaataaccccagg 326 |||||||||||| ||||| || |||||||| || |||||||| |||| ||||||||| || Sbjct: 657 atcatctgaaataggtgggttcgatccaaacaccgcattggcaatagtaataaccccggg 598 Query: 327 gttttggct 335 |||||||| Sbjct: 597 attttggct 589
>ref|XM_480461.1| Oryza sativa (japonica cultivar-group), mRNA Length = 675 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 268 tcatctgaaattggtggctttgatccaaagactgcattggcgatagaaataaccccaggg 327 |||||||| ||||||||||| |||||||| |||||||| || |||| || || |||||| Sbjct: 593 tcatctgagattggtggcttcgatccaaaaactgcatttgcaatagtgatgacaccaggg 534 Query: 328 ttttggctgct 338 ||||| ||||| Sbjct: 533 ttttgactgct 523 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 187 tagtagttgttattctcccagaactgag 214 ||||||| ||| |||||||||||||||| Sbjct: 674 tagtagtggttgttctcccagaactgag 647
>dbj|AK063013.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A07, full insert sequence Length = 948 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||| ||||| ||| | || ||||||||||| || |||||||| ||||||||||| ||| Sbjct: 703 tccacttgaaatgccttagcaagaacatcatccgagattggtggatttgatccaaatact 644 Query: 301 gcatt 305 ||||| Sbjct: 643 gcatt 639
>gb|AF032972.1|AF032972 Oryza sativa germin-like protein 2 (GER2) mRNA, complete cds Length = 917 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 376 aggttcatttggaagtgaatcattgcttttgggaatacgaatacatcaccctt 428 ||||||||||| |||||||||||||| || ||||| || || ||||||||||| Sbjct: 533 aggttcatttgaaagtgaatcattgccttagggaacacaaacacatcaccctt 481
>ref|XM_480463.1| Oryza sativa (japonica cultivar-group), mRNA Length = 675 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 271 tctgaaattggtggctttgatccaaagactgcattggcgatagaaataaccccagggttt 330 |||||||| |||||||||||||| || |||||||| || |||| || | ||||||||| Sbjct: 590 tctgaaatcggtggctttgatccgaacactgcatttgcaatagtgatggcaccagggttt 531 Query: 331 tggctgct 338 |||||||| Sbjct: 530 tggctgct 523
>gb|AF250933.1|AF250933 Hordeum vulgare germin A (GerA) gene, complete cds Length = 1243 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Minus Query: 244 acctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagactgca 303 |||||||| ||| ||| ||||||||||| || |||||||| | ||| ||||| |||||| Sbjct: 981 acctgaaatgccttggaaagaacatcatccgatattggtgggtctgacccaaacactgca 922 Query: 304 ttggcgatagaaataaccccagggttttggctgctgagcg 343 ||||| || | ||| |||| ||||| ||||| ||||||| Sbjct: 921 ttggcaattgtgatagcccctgggttctggctactgagcg 882
>ref|XM_480448.1| Oryza sativa (japonica cultivar-group), mRNA Length = 660 Score = 54.0 bits (27), Expect = 4e-04 Identities = 78/95 (82%) Strand = Plus / Minus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||||||||| ||| |||| | || |||||| || || ||||| ||||||| || ||| Sbjct: 629 tccacctgaaatgccttggccaaaatatcatccgagatcggtgggtttgatctgaacact 570 Query: 301 gcattggcgatagaaataaccccagggttttggct 335 ||||| || |||| ||||| |||||| |||||||| Sbjct: 569 gcatttgcaatagtaataatcccaggattttggct 535
>dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0020B10 Length = 136175 Score = 54.0 bits (27), Expect = 4e-04 Identities = 78/95 (82%) Strand = Plus / Minus Query: 241 tccacctgaaacgccgtggctagaacatcatctgaaattggtggctttgatccaaagact 300 ||||||||||| ||| |||| | || |||||| || || ||||| ||||||| || ||| Sbjct: 131087 tccacctgaaatgccttggccaaaatatcatccgagatcggtgggtttgatctgaacact 131028 Query: 301 gcattggcgatagaaataaccccagggttttggct 335 ||||| || |||| ||||| |||||| |||||||| Sbjct: 131027 gcatttgcaatagtaataatcccaggattttggct 130993
>ref|XM_465766.1| Oryza sativa (japonica cultivar-group), mRNA Length = 672 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 282 tggctttgatccaaagactgcattggcgatagaaataaccccagggttttggct 335 ||||||||||||||| || |||||||| | || || ||||||||||||||||| Sbjct: 594 tggctttgatccaaacaccgcattggctacagtgatcaccccagggttttggct 541
>gb|AY650052.1| Triticum monococcum germin-like protein 4 (GLP4) mRNA, complete cds Length = 944 Score = 52.0 bits (26), Expect = 0.002 Identities = 115/145 (79%) Strand = Plus / Minus Query: 199 ttctcccagaactgagattgnagccagtgaatcagatccttctccacctgaaacgccgtg 258 |||||||||||||||| || ||||||| || || ||| |||||||| |||||| || Sbjct: 726 ttctcccagaactgagcctggagccagtctattgtattcttttccacctggaacgccttg 667 Query: 259 gctagaacatcatctgaaattggtggctttgatccaaagactgcattggcgatagaaata 318 || ||||||||||| || ||| |||| | || ||||| || |||||||| || | ||| Sbjct: 666 gcaagaacatcatcggatatttgtgggtccgacccaaacaccgcattggcaattgtgata 607 Query: 319 accccagggttttggctgctgagcg 343 |||| ||||| |||||||| |||| Sbjct: 606 gcccctgggttctggctgctaagcg 582
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 282 tggctttgatccaaagactgcattggcgatagaaataaccccagggttttggct 335 ||||||||||||||| || |||||||| | || || ||||||||||||||||| Sbjct: 17275597 tggctttgatccaaacaccgcattggctacagtgatcaccccagggttttggct 17275544
>dbj|AP005317.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0579G08 Length = 164452 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 282 tggctttgatccaaagactgcattggcgatagaaataaccccagggttttggct 335 ||||||||||||||| || |||||||| | || || ||||||||||||||||| Sbjct: 48280 tggctttgatccaaacaccgcattggctacagtgatcaccccagggttttggct 48227
>dbj|AP004864.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0048K16 Length = 159891 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 282 tggctttgatccaaagactgcattggcgatagaaataaccccagggttttggct 335 ||||||||||||||| || |||||||| | || || ||||||||||||||||| Sbjct: 146364 tggctttgatccaaacaccgcattggctacagtgatcaccccagggttttggct 146311
>gb|AC141634.4| Mus musculus BAC clone RP24-69A18 from chromosome 6, complete sequence Length = 227680 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 131 tctatatactagcattacatatgaa 155 ||||||||||||||||||||||||| Sbjct: 55834 tctatatactagcattacatatgaa 55858
>gb|AC122387.3| Mus musculus BAC clone RP24-76F22 from 6, complete sequence Length = 191058 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 131 tctatatactagcattacatatgaa 155 ||||||||||||||||||||||||| Sbjct: 190753 tctatatactagcattacatatgaa 190777
>gb|AF141879.1|AF141879 Oryza sativa germin-like protein 2 precursor (RGLP2) mRNA, complete cds Length = 900 Score = 48.1 bits (24), Expect = 0.024 Identities = 57/68 (83%) Strand = Plus / Minus Query: 271 tctgaaattggtggctttgatccaaagactgcattggcgatagaaataaccccagggttt 330 |||||||| |||||||||| ||| || |||||||| || |||| || | ||||||||| Sbjct: 615 tctgaaatcggtggctttggtccgaacactgcatttgcaatagtgatggcaccagggttt 556 Query: 331 tggctgct 338 |||||||| Sbjct: 555 tggctgct 548
>ref|XM_480459.1| Oryza sativa (japonica cultivar-group), mRNA Length = 675 Score = 46.1 bits (23), Expect = 0.094 Identities = 32/35 (91%) Strand = Plus / Minus Query: 271 tctgaaattggtggctttgatccaaagactgcatt 305 |||||||| |||||||||||||| || |||||||| Sbjct: 590 tctgaaatcggtggctttgatccgaacactgcatt 556 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 406 gggaatacgaatacatcaccctt 428 ||||||||||||||||||||||| Sbjct: 455 gggaatacgaatacatcaccctt 433
>ref|XM_480456.1| Oryza sativa (japonica cultivar-group), mRNA Length = 678 Score = 46.1 bits (23), Expect = 0.094 Identities = 47/55 (85%) Strand = Plus / Minus Query: 236 ccttctccacctgaaacgccgtggctagaacatcatctgaaattggtggctttga 290 ||||||| |||||||| ||| | || | ||| |||||||| |||||||||||||| Sbjct: 628 ccttctcaacctgaaatgcctttgccaaaacttcatctgagattggtggctttga 574
>gb|AY116170.1| Gossypium hirsutum D-subgenome putative germin E protein precursor, gene, partial cds Length = 661 Score = 44.1 bits (22), Expect = 0.37 Identities = 43/50 (86%) Strand = Plus / Minus Query: 292 ccaaagactgcattggcgatagaaataaccccagggttttggctgctgag 341 ||||| || |||||||| |||| ||||| || ||||||||||||||||| Sbjct: 596 ccaaaaacagcattggctatagttataactcctgggttttggctgctgag 547
>gb|AY116169.1| Gossypium hirsutum A-subgenome putative germin E protein precursor, gene, partial cds Length = 667 Score = 44.1 bits (22), Expect = 0.37 Identities = 43/50 (86%) Strand = Plus / Minus Query: 292 ccaaagactgcattggcgatagaaataaccccagggttttggctgctgag 341 ||||| || |||||||| |||| ||||| || ||||||||||||||||| Sbjct: 602 ccaaaaacagcattggctatagttataactcctgggttttggctgctgag 553
>gb|AY116168.1| Gossypium raimondii putative germin E protein precursor, gene, partial cds Length = 661 Score = 44.1 bits (22), Expect = 0.37 Identities = 43/50 (86%) Strand = Plus / Minus Query: 292 ccaaagactgcattggcgatagaaataaccccagggttttggctgctgag 341 ||||| || |||||||| |||| ||||| || ||||||||||||||||| Sbjct: 596 ccaaaaacagcattggctatagttataactcctgggttttggctgctgag 547
>gb|AY116167.1| Gossypium herbaceum putative germin E protein precursor, gene, partial cds Length = 669 Score = 44.1 bits (22), Expect = 0.37 Identities = 43/50 (86%) Strand = Plus / Minus Query: 292 ccaaagactgcattggcgatagaaataaccccagggttttggctgctgag 341 ||||| || |||||||| |||| ||||| || ||||||||||||||||| Sbjct: 604 ccaaaaacagcattggctatagttataactcctgggttttggctgctgag 555
>ref|XM_473904.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 765 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 319 accccagggttttggctgctgagcg 343 ||||||||||| ||||||||||||| Sbjct: 566 accccagggttctggctgctgagcg 542
>gb|AY597815.1| Hyposoter fugitivus ichnovirus segment C3, complete sequence Length = 4068 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 408 gaatacgaatacatcaccctt 428 ||||||||||||||||||||| Sbjct: 444 gaatacgaatacatcaccctt 424
>ref|XM_547305.2| PREDICTED: Canis familiaris similar to synapse defective 1, Rho GTPase, homolog 1 (LOC490184), mRNA Length = 3538 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 267 atcatctgaaattggtggctt 287 ||||||||||||||||||||| Sbjct: 2780 atcatctgaaattggtggctt 2800
>gb|BC010109.2| Homo sapiens CD99 molecule, mRNA (cDNA clone MGC:19734 IMAGE:3606974), complete cds Length = 1255 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 486 tccttctccacctgaaacgcc 466
>gb|BC002584.2| Homo sapiens CD99 molecule, mRNA (cDNA clone MGC:2282 IMAGE:3161673), complete cds Length = 1185 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 418 tccttctccacctgaaacgcc 398
>gb|BC003147.1| Homo sapiens CD99 molecule, mRNA (cDNA clone MGC:3938 IMAGE:2906143), complete cds Length = 1149 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 376 tccttctccacctgaaacgcc 356
>gb|BC024310.1| Homo sapiens CD99 molecule, mRNA (cDNA clone MGC:14521 IMAGE:4094268), complete cds Length = 1258 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 479 tccttctccacctgaaacgcc 459
>gb|BC021620.1| Homo sapiens CD99 molecule, mRNA (cDNA clone MGC:4214 IMAGE:2957883), complete cds Length = 1149 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 376 tccttctccacctgaaacgcc 356
>emb|AL031589.10|HS11O7 Human DNA sequence from clone RP6-11O7 on chromosome 22q13.1-13.2, complete sequence Length = 115932 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ttcaaaaggaaaatgaaaatt 83 ||||||||||||||||||||| Sbjct: 22511 ttcaaaaggaaaatgaaaatt 22491
>emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093O08, complete sequence Length = 148860 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 319 accccagggttttggctgctgagcg 343 ||||||||||| ||||||||||||| Sbjct: 124530 accccagggttctggctgctgagcg 124554
>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23, complete sequence Length = 164805 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 319 accccagggttttggctgctgagcg 343 ||||||||||| ||||||||||||| Sbjct: 5405 accccagggttctggctgctgagcg 5429
>ref|NM_002414.3| Homo sapiens CD99 molecule (CD99), mRNA Length = 1255 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 486 tccttctccacctgaaacgcc 466
>gb|AC110062.4| Homo sapiens chromosome 18, clone CTD-2125N24, complete sequence Length = 139550 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 cttcaaaaggaaaatgaaaat 82 ||||||||||||||||||||| Sbjct: 91769 cttcaaaaggaaaatgaaaat 91749
>emb|CR620339.1| full-length cDNA clone CS0DI082YB19 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1040 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 289 tccttctccacctgaaacgcc 269
>emb|CR617471.1| full-length cDNA clone CS0DI036YH18 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1051 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 331 tccttctccacctgaaacgcc 311
>emb|CR615331.1| full-length cDNA clone CS0DE013YA05 of Placenta of Homo sapiens (human) Length = 1039 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 375 tccttctccacctgaaacgcc 355
>emb|CR613828.1| full-length cDNA clone CS0DL011YA16 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1073 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 434 tccttctccacctgaaacgcc 414
>emb|CR613826.1| full-length cDNA clone CS0DL011YA18 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1093 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 434 tccttctccacctgaaacgcc 414
>emb|CR613006.1| full-length cDNA clone CS0DI056YM24 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1107 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 375 tccttctccacctgaaacgcc 355
>emb|CR612683.1| full-length cDNA clone CS0DI044YA19 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1055 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 333 tccttctccacctgaaacgcc 313
>emb|CR611995.1| full-length cDNA clone CS0DJ006YG11 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1089 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 360 tccttctccacctgaaacgcc 340
>emb|CR611199.1| full-length cDNA clone CS0DJ007YA14 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 842 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 363 tccttctccacctgaaacgcc 343
>emb|CR610873.1| full-length cDNA clone CS0DI041YC12 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1083 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 344 tccttctccacctgaaacgcc 324
>emb|CR606510.1| full-length cDNA clone CS0DL005YG07 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1173 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 453 tccttctccacctgaaacgcc 433
>emb|CR605688.1| full-length cDNA clone CS0DI009YO21 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1077 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 437 tccttctccacctgaaacgcc 417
>emb|CR599762.1| full-length cDNA clone CS0DI009YG12 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1092 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 344 tccttctccacctgaaacgcc 324
>emb|CR590061.1| full-length cDNA clone CS0DI062YA02 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1142 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 417 tccttctccacctgaaacgcc 397
>emb|CR450286.1| Homo sapiens full open reading frame cDNA clone RZPDo834A101D for gene CD99, CD99 antigen; complete cds; without stopcodon Length = 555 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 312 tccttctccacctgaaacgcc 292
>gb|AY116171.1| Gossypioides kirkii putative germin E protein precursor, gene, partial cds Length = 654 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 301 gcattggcgatagaaataaccccagggttttggctgctgag 341 |||||||| |||| ||||| || ||||||||||||||||| Sbjct: 580 gcattggctatagttataactcctgggttttggctgctgag 540
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 319 accccagggttttggctgctgagcg 343 ||||||||||| ||||||||||||| Sbjct: 31427722 accccagggttctggctgctgagcg 31427746
>dbj|AK109057.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-E11, full insert sequence Length = 974 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 319 accccagggttttggctgctgagcg 343 ||||||||||| ||||||||||||| Sbjct: 513 accccagggttctggctgctgagcg 489
>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete sequence Length = 131195 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 319 accccagggttttggctgctgagcg 343 ||||||||||| ||||||||||||| Sbjct: 47657 accccagggttctggctgctgagcg 47681
>gb|U82164.1|HSU82164 Human transmembrane protein CD99 type II mRNA, complete cds Length = 573 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 312 tccttctccacctgaaacgcc 292
>emb|X16996.1|HSE2 Human mRNA for T-cell surface glycoprotein E2 Length = 1110 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 435 tccttctccacctgaaacgcc 415
>gb|M16279.1|HUMMIC2A Human MIC2 mRNA, complete cds Length = 1238 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tccttctccacctgaaacgcc 255 ||||||||||||||||||||| Sbjct: 489 tccttctccacctgaaacgcc 469
>ref|NM_006378.2| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D (SEMA4D), mRNA Length = 4675 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 gctgctgagcgaggacaagg 352 |||||||||||||||||||| Sbjct: 731 gctgctgagcgaggacaagg 750
>ref|NM_123253.1| Arabidopsis thaliana nutrient reservoir AT5G38910 mRNA, complete cds Length = 669 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 ccagggttttggctgctgag 341 |||||||||||||||||||| Sbjct: 542 ccagggttttggctgctgag 523
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 cattgcttttgggaatacga 415 |||||||||||||||||||| Sbjct: 4781365 cattgcttttgggaatacga 4781346
>ref|XM_953631.1| Neurospora crassa OR74A hypothetical protein (NCU09658.1) partial mRNA Length = 3048 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 cgaggacaaggcggctgctg 361 |||||||||||||||||||| Sbjct: 1365 cgaggacaaggcggctgctg 1384
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 cattgcttttgggaatacga 415 |||||||||||||||||||| Sbjct: 4782574 cattgcttttgggaatacga 4782555
>ref|XM_330307.1| Neurospora crassa OR74A hypothetical protein (NCU09658.1) partial mRNA Length = 3048 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 cgaggacaaggcggctgctg 361 |||||||||||||||||||| Sbjct: 1365 cgaggacaaggcggctgctg 1384
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 cattgcttttgggaatacga 415 |||||||||||||||||||| Sbjct: 4855697 cattgcttttgggaatacga 4855678
>gb|BC008049.2| Homo sapiens hypothetical protein DKFZp761I2123, mRNA (cDNA clone IMAGE:3631645), partial cds Length = 1958 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aaggaaaatgaaaattcaca 87 |||||||||||||||||||| Sbjct: 1101 aaggaaaatgaaaattcaca 1120
>emb|AL590233.23| Human DNA sequence from clone RP13-93L13 on chromosome 9 Contains a ubiquitin-conjugating enzyme E2 pseudogene, a proliferation-associated 2G4, 38kDa (PA2G4) pseuodgene, the 5' end of the SEMA4D gene for sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D and a CpG island, complete sequence Length = 109008 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 gctgctgagcgaggacaagg 352 |||||||||||||||||||| Sbjct: 99435 gctgctgagcgaggacaagg 99454
>emb|AL135933.11| Human DNA sequence from clone RP4-774E4 on chromosome 11p13-14.2 Contains a pseudogene similar to ribosomal protein L7a, STSs and GSSs, complete sequence Length = 111135 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 aagaaaacatatcatgtcac 60 |||||||||||||||||||| Sbjct: 23066 aagaaaacatatcatgtcac 23047
>gb|AC183622.3| Pan troglodytes BAC clone CH251-66G8 from chromosome 15, complete sequence Length = 206618 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ttcaaaaggaaaatgaaaat 82 |||||||||||||||||||| Sbjct: 154056 ttcaaaaggaaaatgaaaat 154037
>gb|BC054500.1| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D, mRNA (cDNA clone MGC:57659 IMAGE:5551182), complete cds Length = 4675 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 gctgctgagcgaggacaagg 352 |||||||||||||||||||| Sbjct: 731 gctgctgagcgaggacaagg 750
>emb|AJ290956.2|DME290956 Drosophila melanogaster eIF2g gene for eukaryotic translation initiation factor 2 gamma subunit and Su(var)3-9 gene for histone-lysine N-methyltransferase, H3 lysine-9 specific Length = 11411 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 tcagatccttctccacctga 249 |||||||||||||||||||| Sbjct: 688 tcagatccttctccacctga 707
>emb|BX572627.5| Zebrafish DNA sequence from clone CH211-222M21 in linkage group 9, complete sequence Length = 209758 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 tcaaaaggaaaatgaaaattcaca 87 ||||||| |||||||||||||||| Sbjct: 170909 tcaaaagtaaaatgaaaattcaca 170886
>gb|AC009368.8| Drosophila melanogaster 3L BAC RP98-4F7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 158816 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 tgcttttgggaatacgaata 418 |||||||||||||||||||| Sbjct: 37364 tgcttttgggaatacgaata 37383
>dbj|AK097263.1| Homo sapiens cDNA FLJ39944 fis, clone SPLEN2023423 Length = 1913 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 aaggaaaatgaaaattcaca 87 |||||||||||||||||||| Sbjct: 436 aaggaaaatgaaaattcaca 455
>ref|NM_169631.1| Drosophila melanogaster Oligomycin sensitivity-conferring protein CG4307-RB, transcript variant B (Oscp), mRNA Length = 862 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tcagatccttctccacctga 249 |||||||||||||||||||| Sbjct: 302 tcagatccttctccacctga 283
>ref|NM_079634.2| Drosophila melanogaster Oligomycin sensitivity-conferring protein CG4307-RA, transcript variant A (Oscp), mRNA Length = 817 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tcagatccttctccacctga 249 |||||||||||||||||||| Sbjct: 257 tcagatccttctccacctga 238
>gb|AC068388.7| Homo sapiens chromosome 3, clone RP11-296M9, complete sequence Length = 148372 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 aagaaaacatatcatgtcac 60 |||||||||||||||||||| Sbjct: 50626 aagaaaacatatcatgtcac 50607
>gb|AC093152.2| Homo sapiens chromosome 1 clone RP11-455P21, complete sequence Length = 151449 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 aaaaggaaaatgaaaattca 85 |||||||||||||||||||| Sbjct: 24994 aaaaggaaaatgaaaattca 24975
>gb|AC087474.9| Homo sapiens chromosome 15, clone RP11-350A1, complete sequence Length = 185221 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ttcaaaaggaaaatgaaaat 82 |||||||||||||||||||| Sbjct: 128732 ttcaaaaggaaaatgaaaat 128713
>gb|AY058261.1| Drosophila melanogaster GH01760 full length cDNA Length = 804 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tcagatccttctccacctga 249 |||||||||||||||||||| Sbjct: 221 tcagatccttctccacctga 202
>gb|AC009904.7| Drosophila melanogaster, chromosome 3R, region 88E-88E, BAC clone BACR32A03, complete sequence Length = 182601 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tcagatccttctccacctga 249 |||||||||||||||||||| Sbjct: 176091 tcagatccttctccacctga 176072
>gb|AC136037.2| Rattus norvegicus X BAC CH230-378N18 (Children's Hospital Oakland Research Institute) complete sequence Length = 98442 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ttcaaaaggaaaatgaaaat 82 |||||||||||||||||||| Sbjct: 18610 ttcaaaaggaaaatgaaaat 18629
>gb|AC013436.5| Homo sapiens BAC clone RP11-105B9 from 7, complete sequence Length = 63823 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 aaggaaaatgaaaattcaca 87 |||||||||||||||||||| Sbjct: 51884 aaggaaaatgaaaattcaca 51865
>gb|AC027315.3|AC027315 Homo sapiens chromosome 5 clone CTC-293G12, complete sequence Length = 171390 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 acaagaaaacatatcatgtc 58 |||||||||||||||||||| Sbjct: 161255 acaagaaaacatatcatgtc 161274
>gb|AC006209.25| Homo sapiens X BAC GS1-546D14 (Genome Systems Human Bac Library) complete sequence Length = 141759 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 ccttctccacctgaaacgcc 255 |||||||||||||||||||| Sbjct: 82127 ccttctccacctgaaacgcc 82146
>dbj|AB210030.1| Homo sapiens mRNA for SEMA4D variant protein, partial cds, clone: hh05253 Length = 5682 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 gctgctgagcgaggacaagg 352 |||||||||||||||||||| Sbjct: 936 gctgctgagcgaggacaagg 955
>gb|AC007648.6|AC007648 Drosophila melanogaster, chromosome 3R, region 88E-88F, BAC clone BACR13A02, complete sequence Length = 166141 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tcagatccttctccacctga 249 |||||||||||||||||||| Sbjct: 25125 tcagatccttctccacctga 25106
>gb|AC021086.4|AC021086 Homo sapiens chromosome 5 clone CTD-2001C12, complete sequence Length = 137063 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 acaagaaaacatatcatgtc 58 |||||||||||||||||||| Sbjct: 75636 acaagaaaacatatcatgtc 75655
>gb|BT003799.1| Drosophila melanogaster AT25705 full insert cDNA Length = 903 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tcagatccttctccacctga 249 |||||||||||||||||||| Sbjct: 302 tcagatccttctccacctga 283
>gb|AC010382.4|AC010382 Homo sapiens chromosome 5 clone CTD-2068C11, complete sequence Length = 151365 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 acaagaaaacatatcatgtc 58 |||||||||||||||||||| Sbjct: 109242 acaagaaaacatatcatgtc 109261
>emb|BX648216.1|HSM808364 Homo sapiens mRNA; cDNA DKFZp686G03249 (from clone DKFZp686G03249) Length = 4284 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 gctgctgagcgaggacaagg 352 |||||||||||||||||||| Sbjct: 523 gctgctgagcgaggacaagg 542
>dbj|AB009048.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15E6 Length = 71736 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 ccagggttttggctgctgag 341 |||||||||||||||||||| Sbjct: 41946 ccagggttttggctgctgag 41927
>gb|AE003708.3| Drosophila melanogaster chromosome 3R, section 46 of 118 of the complete sequence Length = 236375 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tcagatccttctccacctga 249 |||||||||||||||||||| Sbjct: 69557 tcagatccttctccacctga 69538
>gb|AE003521.3| Drosophila melanogaster chromosome 3L, section 64 of 83 of the complete sequence Length = 271237 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 tgcttttgggaatacgaata 418 |||||||||||||||||||| Sbjct: 231310 tgcttttgggaatacgaata 231329
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 cattgcttttgggaatacga 415 |||||||||||||||||||| Sbjct: 4781239 cattgcttttgggaatacga 4781220
>gb|U60800.1|HSU60800 Human semaphorin (CD100) mRNA, complete cds Length = 4157 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 gctgctgagcgaggacaagg 352 |||||||||||||||||||| Sbjct: 246 gctgctgagcgaggacaagg 265
>emb|AL935291.6| Zebrafish DNA sequence from clone CH211-226M23 in linkage group 1, complete sequence Length = 174091 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 tcaaaaggaaaatgaaaatt 83 |||||||||||||||||||| Sbjct: 138003 tcaaaaggaaaatgaaaatt 137984
>emb|X99666.1|DMOSCPPRE D.melanogaster mRNA for oligomysin sensitivity conferring protein precursor Length = 750 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tcagatccttctccacctga 249 |||||||||||||||||||| Sbjct: 175 tcagatccttctccacctga 156 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,023,284 Number of Sequences: 3902068 Number of extensions: 5023284 Number of successful extensions: 94547 Number of sequences better than 10.0: 125 Number of HSP's better than 10.0 without gapping: 124 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 93908 Number of HSP's gapped (non-prelim): 620 length of query: 432 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 410 effective length of database: 17,147,199,772 effective search space: 7030351906520 effective search space used: 7030351906520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)