ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23l01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009403.1| Triticum aestivum clone wlm96.pk047.l4:fis, full insert mRNA sequence Length = 1653 Score = 831 bits (419), Expect = 0.0 Identities = 549/591 (92%), Gaps = 10/591 (1%) Strand = Plus / Minus Query: 1 agtggtttgggtaaatacgacacaaatcacgacagnatcgtattacaggattctaacgaa 60 |||||||||| ||||| ||||| ||||||||||| ||| |||||||||| |||| |||| Sbjct: 1504 agtggtttggataaat-cgacagaaatcacgaca-aatcatattacaggactctagcgaa 1447 Query: 61 gggcggtcaaac-------act-taagatatcatcgaaattagatctccttgaatgcagc 112 |||||||||||| ||| |||| | |||||||||||||||||||||||||||||| Sbjct: 1446 gggcggtcaaacgcagcatactgtaaggtctcatcgaaattagatctccttgaatgcagc 1387 Query: 113 aaagaggtccccgctgatgtagtcattgtccacaaggctgaccaggcaataggtcttctg 172 ||||||||||||||||||||||||||||||||| |||||||||| | ||||| ||||||| Sbjct: 1386 aaagaggtccccgctgatgtagtcattgtccacgaggctgaccaagtaatagctcttctg 1327 Query: 173 cacctgctctagcaactccctggatgagtcaccctccgggaacaggcaggcccatcccct 232 | ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| Sbjct: 1326 aatctgctctagcaactccctggacgagtcgccctctgggaacaggcaggcccatcccct 1267 Query: 233 ggaccagatctcaaacgcttcatctttccaaaccatgaagctcgccgagtcaacgacggt 292 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 1266 ggaccagatctcaaacgcttcatctttccagaccatgaagctcgctgagtcaacgacggt 1207 Query: 293 aggctggatgatctccttgccggggaacacgccccaagtgacagcgttcacggcgttcgc 352 |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| Sbjct: 1206 aggctggatgatctccttgccggggaacacaccccatgtgacagcattcacggcgttcgc 1147 Query: 353 agggatgtttgagatcgattccccttccttgttcaccgcgatgtatgtgagggaagggaa 412 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 1146 agggatgtttgagatcgattccccttccttgttcacggcgatgtacgtgagggaagggaa 1087 Query: 413 tgccttgctcttctcgatgagttggtccagcttctccttagcgcanaagaattcgacgta 472 ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct: 1086 tgccttgctcttctcgatgagttggcccagcttctccttagcgcagaagaattcgacgta 1027 Query: 473 ggccttttggtaaacatagcctnctggaccgccccatccaacactaggagactcanattt 532 |||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |||| Sbjct: 1026 ggccttctggtaaacatagcctcctgggccgccccatccaacactaggagactcagattt 967 Query: 533 ctctgcatttacagcangttggctgttgatggtaangaaaccctttgagtt 583 |||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 966 ctctgcatttacagcaggttggctgttgatggtaaggaaaccctttgagtt 916
>gb|AF174486.1|AF174486 Zea mays methylenetetrahydrofolate reductase mRNA, complete cds Length = 2225 Score = 281 bits (142), Expect = 1e-72 Identities = 392/477 (82%) Strand = Plus / Minus Query: 101 cttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgaccaggca 160 |||||| |||||||| |||||||| || |||||| ||||| || |||||||||||| | Sbjct: 1852 cttgaaggcagcaaacaggtccccctggacgtagtcgttgtcaacgaggctgaccaggta 1793 Query: 161 ataggtcttctgcacctgctctagcaactccctggatgagtcaccctccgggaacaggca 220 ||||||||||| |||| |||||| | |||||| ||||| |||||||| ||||||| ||| Sbjct: 1792 gtaggtcttctgaaccttctctagtagctccctcgatgaatcaccctcagggaacatgca 1733 Query: 221 ggcccatcccctggaccagatctcaaacgcttcatctttccaaaccatgaagctcgccga 280 |||| |||| | |||||| ||||| ||||| || ||||||||||| || || || Sbjct: 1732 accccacccccgagtccagatttcaaatgcttcgtccttccaaaccataaaacttgcatg 1673 Query: 281 gtcaacgacggtaggctggatgatctccttgccggggaacacgccccaagtgacagcgtt 340 || || || ||||||||||| ||||||||||| ||||| || ||||| |||||||| || Sbjct: 1672 atccacaaccgtaggctggataatctccttgccagggaaaacaccccacgtgacagcatt 1613 Query: 341 cacggcgttcgcagggatgtttgagatcgattccccttccttgttcaccgcgatgtatgt 400 ||||||||||| | || || |||| | ||| || ||||||||||| || ||||| || Sbjct: 1612 cacggcgttcggtgaaatattggagaatgtttctccatccttgttcacagcaatgtaagt 1553 Query: 401 gagggaagggaatgccttgctcttctcgatgagttggtccagcttctccttagcgcanaa 460 ||| ||||||||||| ||| ||||||| || |||||||||| ||||||||| ||||| || Sbjct: 1552 gagagaagggaatgctttgatcttctcaattagttggtccaacttctcctttgcgcagaa 1493 Query: 461 gaattcgacgtaggccttttggtaaacatagcctnctggaccgccccatccaacactagg 520 |||||||| ||||||||| || ||||| |||||| | ||||| ||||| |||||| |||| Sbjct: 1492 gaattcgaggtaggccttctgataaacgtagcctccaggaccaccccaaccaacagtagg 1433 Query: 521 agactcanatttctctgcatttacagcangttggctgttgatggtaangaaaccctt 577 || || |||||||| ||||||||||| |||||||||| || |||| ||||||||| Sbjct: 1432 cgagtcggatttctctccatttacagcaggttggctgttaattgtaaggaaaccctt 1376
>ref|XM_470089.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2167 Score = 276 bits (139), Expect = 8e-71 Identities = 395/482 (81%) Strand = Plus / Minus Query: 96 atctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgacc 155 ||||||||||| || || ||||| || ||| |||||||||| ||||||||||| || ||| Sbjct: 1847 atctccttgaacgccgcgaagagatcaccgttgatgtagtcgttgtccacaagactaacc 1788 Query: 156 aggcaataggtcttctgcacctgctctagcaactccctggatgagtcaccctccgggaac 215 | | | ||| ||||||| |||| ||||| | |||||| |||||||| ||||| |||||| Sbjct: 1787 aagaagtagctcttctggaccttgtctagtatctccctagatgagtcgccctcagggaac 1728 Query: 216 aggcaggcccatcccctggaccagatctcaaacgcttcatctttccaaaccatgaagctc 275 ||||| ||||| ||| | ||||| || || || ||||| |||||||||||||| ||||| Sbjct: 1727 aggcaagcccaaccctttgaccaaatttcgaaagcttcgtctttccaaaccataaagctg 1668 Query: 276 gccgagtcaacgacggtaggctggatgatctccttgccggggaacacgccccaagtgaca 335 || ||||||||||| || ||||||| || |||||||| ||||| || ||||| ||||| Sbjct: 1667 gctgagtcaacgacagttggctggactatttccttgccagggaaaacaccccatgtgacc 1608 Query: 336 gcgttcacggcgttcgcagggatgtttgagatcgattccccttccttgttcaccgcgatg 395 || ||||| ||||| | || |||||||||| || || || ||||||||||| || ||| Sbjct: 1607 gcattcacagcgtttgtgggaatgtttgagaatgactctccgtccttgttcacggcaatg 1548 Query: 396 tatgtgagggaagggaatgccttgctcttctcgatgagttggtccagcttctccttagcg 455 ||||| || ||||||||||||||||||||||| || || || ||||||||||| || | Sbjct: 1547 tatgtaagagaagggaatgccttgctcttctcaattagctgatccagcttctcttttgaa 1488 Query: 456 canaagaattcgacgtaggccttttggtaaacatagcctnctggaccgccccatccaaca 515 || ||||| || | |||||||| ||||||||||||||| | ||||| |||||||||||| Sbjct: 1487 cagaagaactcaagataggccttctggtaaacatagcctccaggaccaccccatccaaca 1428 Query: 516 ctaggagactcanatttctctgcatttacagcangttggctgttgatggtaangaaaccc 575 || | || ||| || ||||| |||| |||||| |||||||||| ||||||| ||| ||| Sbjct: 1427 cttgttgaatcagatctctctccattaacagcaggttggctgttaatggtaaggaagccc 1368 Query: 576 tt 577 || Sbjct: 1367 tt 1366
>dbj|AK099527.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031C07, full insert sequence Length = 1119 Score = 276 bits (139), Expect = 8e-71 Identities = 395/482 (81%) Strand = Plus / Minus Query: 96 atctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgacc 155 ||||||||||| || || ||||| || ||| |||||||||| ||||||||||| || ||| Sbjct: 909 atctccttgaacgccgcgaagagatcaccgttgatgtagtcgttgtccacaagactaacc 850 Query: 156 aggcaataggtcttctgcacctgctctagcaactccctggatgagtcaccctccgggaac 215 | | | ||| ||||||| |||| ||||| | |||||| |||||||| ||||| |||||| Sbjct: 849 aagaagtagctcttctggaccttgtctagtatctccctagatgagtcgccctcagggaac 790 Query: 216 aggcaggcccatcccctggaccagatctcaaacgcttcatctttccaaaccatgaagctc 275 ||||| ||||| ||| | ||||| || || || ||||| |||||||||||||| ||||| Sbjct: 789 aggcaagcccaaccctttgaccaaatttcgaaagcttcgtctttccaaaccataaagctg 730 Query: 276 gccgagtcaacgacggtaggctggatgatctccttgccggggaacacgccccaagtgaca 335 || ||||||||||| || ||||||| || |||||||| ||||| || ||||| ||||| Sbjct: 729 gctgagtcaacgacagttggctggactatttccttgccagggaaaacaccccatgtgacc 670 Query: 336 gcgttcacggcgttcgcagggatgtttgagatcgattccccttccttgttcaccgcgatg 395 || ||||| ||||| | || |||||||||| || || || ||||||||||| || ||| Sbjct: 669 gcattcacagcgtttgtgggaatgtttgagaatgactctccgtccttgttcacggcaatg 610 Query: 396 tatgtgagggaagggaatgccttgctcttctcgatgagttggtccagcttctccttagcg 455 ||||| || ||||||||||||||||||||||| || || || ||||||||||| || | Sbjct: 609 tatgtaagagaagggaatgccttgctcttctcaattagctgatccagcttctcttttgaa 550 Query: 456 canaagaattcgacgtaggccttttggtaaacatagcctnctggaccgccccatccaaca 515 || ||||| || | |||||||| ||||||||||||||| | ||||| |||||||||||| Sbjct: 549 cagaagaactcaagataggccttctggtaaacatagcctccaggaccaccccatccaaca 490 Query: 516 ctaggagactcanatttctctgcatttacagcangttggctgttgatggtaangaaaccc 575 || | || ||| || ||||| |||| |||||| |||||||||| ||||||| ||| ||| Sbjct: 489 cttgttgaatcagatctctctccattaacagcaggttggctgttaatggtaaggaagccc 430 Query: 576 tt 577 || Sbjct: 429 tt 428
>dbj|AK062082.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-F11, full insert sequence Length = 968 Score = 276 bits (139), Expect = 8e-71 Identities = 395/482 (81%) Strand = Plus / Minus Query: 96 atctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgacc 155 ||||||||||| || || ||||| || ||| |||||||||| ||||||||||| || ||| Sbjct: 763 atctccttgaacgccgcgaagagatcaccgttgatgtagtcgttgtccacaagactaacc 704 Query: 156 aggcaataggtcttctgcacctgctctagcaactccctggatgagtcaccctccgggaac 215 | | | ||| ||||||| |||| ||||| | |||||| |||||||| ||||| |||||| Sbjct: 703 aagaagtagctcttctggaccttgtctagtatctccctagatgagtcgccctcagggaac 644 Query: 216 aggcaggcccatcccctggaccagatctcaaacgcttcatctttccaaaccatgaagctc 275 ||||| ||||| ||| | ||||| || || || ||||| |||||||||||||| ||||| Sbjct: 643 aggcaagcccaaccctttgaccaaatttcgaaagcttcgtctttccaaaccataaagctg 584 Query: 276 gccgagtcaacgacggtaggctggatgatctccttgccggggaacacgccccaagtgaca 335 || ||||||||||| || ||||||| || |||||||| ||||| || ||||| ||||| Sbjct: 583 gctgagtcaacgacagttggctggactatttccttgccagggaaaacaccccatgtgacc 524 Query: 336 gcgttcacggcgttcgcagggatgtttgagatcgattccccttccttgttcaccgcgatg 395 || ||||| ||||| | || |||||||||| || || || ||||||||||| || ||| Sbjct: 523 gcattcacagcgtttgtgggaatgtttgagaatgactctccgtccttgttcacggcaatg 464 Query: 396 tatgtgagggaagggaatgccttgctcttctcgatgagttggtccagcttctccttagcg 455 ||||| || ||||||||||||||||||||||| || || || ||||||||||| || | Sbjct: 463 tatgtaagagaagggaatgccttgctcttctcaattagctgatccagcttctcttttgaa 404 Query: 456 canaagaattcgacgtaggccttttggtaaacatagcctnctggaccgccccatccaaca 515 || ||||| || | |||||||| ||||||||||||||| | ||||| |||||||||||| Sbjct: 403 cagaagaactcaagataggccttctggtaaacatagcctccaggaccaccccatccaaca 344 Query: 516 ctaggagactcanatttctctgcatttacagcangttggctgttgatggtaangaaaccc 575 || | || ||| || ||||| |||| |||||| |||||||||| ||||||| ||| ||| Sbjct: 343 cttgttgaatcagatctctctccattaacagcaggttggctgttaatggtaaggaagccc 284 Query: 576 tt 577 || Sbjct: 283 tt 282
>gb|AY109096.1| Zea mays PCO119715 mRNA sequence Length = 2423 Score = 274 bits (138), Expect = 3e-70 Identities = 391/477 (81%) Strand = Plus / Minus Query: 101 cttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgaccaggca 160 |||||| |||||||| |||||||| || |||||| ||||| || |||||||||||| | Sbjct: 1835 cttgaaggcagcaaacaggtccccctggacgtagtcgttgtcaacgaggctgaccaggta 1776 Query: 161 ataggtcttctgcacctgctctagcaactccctggatgagtcaccctccgggaacaggca 220 ||||||||||| |||| |||||| | |||||| ||||| |||||||| ||||||| ||| Sbjct: 1775 gtaggtcttctgaaccttctctagtagctccctcgatgaatcaccctcagggaacatgca 1716 Query: 221 ggcccatcccctggaccagatctcaaacgcttcatctttccaaaccatgaagctcgccga 280 |||| |||| | |||||| ||||| ||||| || ||||||||||| || || || Sbjct: 1715 accccacccccgagtccagatttcaaatgcttcgtccttccaaaccataaaacttgcatg 1656 Query: 281 gtcaacgacggtaggctggatgatctccttgccggggaacacgccccaagtgacagcgtt 340 || || || ||||||||||| ||||||||||| ||||| || ||||| |||||||| || Sbjct: 1655 atccacaaccgtaggctggataatctccttgccagggaaaacaccccacgtgacagcatt 1596 Query: 341 cacggcgttcgcagggatgtttgagatcgattccccttccttgttcaccgcgatgtatgt 400 ||||||||||| | || || |||| | ||| || ||||||||||| || ||||| || Sbjct: 1595 cacggcgttcggtgaaatattggagaatgtttctccatccttgttcacagcaatgtaagt 1536 Query: 401 gagggaagggaatgccttgctcttctcgatgagttggtccagcttctccttagcgcanaa 460 ||| ||||||||||| ||| ||||||| || |||||||||| ||||||||| |||| || Sbjct: 1535 gagagaagggaatgctttgatcttctcaattagttggtccaacttctcctttgcgccgaa 1476 Query: 461 gaattcgacgtaggccttttggtaaacatagcctnctggaccgccccatccaacactagg 520 |||||||| ||||||||| || ||||| |||||| | ||||| ||||| |||||| |||| Sbjct: 1475 gaattcgaggtaggccttctgataaacgtagcctccaggaccaccccaaccaacagtagg 1416 Query: 521 agactcanatttctctgcatttacagcangttggctgttgatggtaangaaaccctt 577 || || |||||||| ||||||||||| |||||||||| || |||| ||||||||| Sbjct: 1415 cgagtcggatttctctccatttacagcaggttggctgttaattgtaaggaaaccctt 1359
>dbj|AK121351.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121O06, full insert sequence Length = 2169 Score = 262 bits (132), Expect = 1e-66 Identities = 395/483 (81%), Gaps = 1/483 (0%) Strand = Plus / Minus Query: 96 atctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgacc 155 ||||||||||| || || ||||| || ||| |||||||||| ||||||||||| || ||| Sbjct: 1849 atctccttgaacgccgcgaagagatcaccgttgatgtagtcgttgtccacaagactaacc 1790 Query: 156 aggcaataggtcttctgcacctgctctagcaactccctggatgagtcaccctccgggaac 215 | | | ||| ||||||| |||| ||||| | |||||| |||||||| ||||| |||||| Sbjct: 1789 aagaagtagctcttctggaccttgtctagtatctccctagatgagtcgccctcagggaac 1730 Query: 216 aggcaggcccatcccctggaccagatctcaaacgcttcatctttccaaaccatgaagctc 275 ||||| ||||| ||| | ||||| || || || ||||| |||||||||||||| ||||| Sbjct: 1729 aggcaagcccaaccctttgaccaaatttcgaaagcttcgtctttccaaaccataaagctg 1670 Query: 276 gccgagtcaacgacggtaggctggatgatctccttgccggggaacacgccccaagtgaca 335 || ||||||||||| || ||||||| || |||||||| ||||| || ||||| ||||| Sbjct: 1669 gctgagtcaacgacagttggctggactatttccttgccagggaaaacaccccatgtgacc 1610 Query: 336 gcgttcacggcgttcgcagggatgtttgagatcgattccccttccttgttcaccgcgatg 395 || ||||| ||||| | || |||||||||| || || || ||||||||||| || ||| Sbjct: 1609 gcattcacagcgtttgtgggaatgtttgagaatgactctccgtccttgttcacggcaatg 1550 Query: 396 tatgtgagggaagggaatgccttgctcttctcgatgagttggtccagcttctccttagcg 455 ||||| || ||||||||||||||||||||||| || || || ||||||||||| || | Sbjct: 1549 tatgtaagagaagggaatgccttgctcttctcaattagctgatccagcttctcttttgaa 1490 Query: 456 canaagaattcgacgtaggccttttggtaaacatagcctnctggaccgccccatccaaca 515 || ||||| || | |||||||| ||||||||||||||| | ||||| |||||||||||| Sbjct: 1489 cagaagaactcaagataggccttctggtaaacatagcctccaggaccaccccatccaaca 1430 Query: 516 ctaggagactcanatttctct-gcatttacagcangttggctgttgatggtaangaaacc 574 || | || ||| || ||||| |||| |||||| |||||||||| ||||||| ||| || Sbjct: 1429 cttgttgaatcagatctctctcccattaacagcaggttggctgttaatggtaaggaagcc 1370 Query: 575 ctt 577 ||| Sbjct: 1369 ctt 1367
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 194 bits (98), Expect = 2e-46 Identities = 267/324 (82%) Strand = Plus / Plus Query: 188 ctccctggatgagtcaccctccgggaacaggcaggcccatcccctggaccagatctcaaa 247 |||||| |||||||| ||||| ||||||||||| ||||| ||| | ||||| || || || Sbjct: 33864681 ctccctagatgagtcgccctcagggaacaggcaagcccaaccctttgaccaaatttcgaa 33864740 Query: 248 cgcttcatctttccaaaccatgaagctcgccgagtcaacgacggtaggctggatgatctc 307 ||||| |||||||||||||| ||||| || ||||||||||| || ||||||| || || Sbjct: 33864741 agcttcgtctttccaaaccataaagctggctgagtcaacgacagttggctggactatttc 33864800 Query: 308 cttgccggggaacacgccccaagtgacagcgttcacggcgttcgcagggatgtttgagat 367 |||||| ||||| || ||||| ||||| || ||||| ||||| | || |||||||||| Sbjct: 33864801 cttgccagggaaaacaccccatgtgaccgcattcacagcgtttgtgggaatgtttgagaa 33864860 Query: 368 cgattccccttccttgttcaccgcgatgtatgtgagggaagggaatgccttgctcttctc 427 || || || ||||||||||| || |||||||| || ||||||||||||||||||||||| Sbjct: 33864861 tgactctccgtccttgttcacggcaatgtatgtaagagaagggaatgccttgctcttctc 33864920 Query: 428 gatgagttggtccagcttctccttagcgcanaagaattcgacgtaggccttttggtaaac 487 || || || ||||||||||| || | || ||||| || | |||||||| |||||||| Sbjct: 33864921 aattagctgatccagcttctcttttgaacagaagaactcaagataggccttctggtaaac 33864980 Query: 488 atagcctnctggaccgccccatcc 511 ||||||| | ||||| |||||||| Sbjct: 33864981 atagcctccaggaccaccccatcc 33865004 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 96 atctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgacc 155 ||||||||||| || || ||||| || ||| |||||||||| ||||||||||| || ||| Sbjct: 33864258 atctccttgaacgccgcgaagagatcaccgttgatgtagtcgttgtccacaagactaacc 33864317 Query: 156 aggcaataggtcttctgcacctg 178 | | | ||| ||||||| ||||| Sbjct: 33864318 aagaagtagctcttctggacctg 33864340
>gb|AC135594.4| Oryza sativa chromosome 3 BAC OSJNBa0024F18 genomic sequence, complete sequence Length = 159795 Score = 194 bits (98), Expect = 2e-46 Identities = 267/324 (82%) Strand = Plus / Minus Query: 188 ctccctggatgagtcaccctccgggaacaggcaggcccatcccctggaccagatctcaaa 247 |||||| |||||||| ||||| ||||||||||| ||||| ||| | ||||| || || || Sbjct: 8559 ctccctagatgagtcgccctcagggaacaggcaagcccaaccctttgaccaaatttcgaa 8500 Query: 248 cgcttcatctttccaaaccatgaagctcgccgagtcaacgacggtaggctggatgatctc 307 ||||| |||||||||||||| ||||| || ||||||||||| || ||||||| || || Sbjct: 8499 agcttcgtctttccaaaccataaagctggctgagtcaacgacagttggctggactatttc 8440 Query: 308 cttgccggggaacacgccccaagtgacagcgttcacggcgttcgcagggatgtttgagat 367 |||||| ||||| || ||||| ||||| || ||||| ||||| | || |||||||||| Sbjct: 8439 cttgccagggaaaacaccccatgtgaccgcattcacagcgtttgtgggaatgtttgagaa 8380 Query: 368 cgattccccttccttgttcaccgcgatgtatgtgagggaagggaatgccttgctcttctc 427 || || || ||||||||||| || |||||||| || ||||||||||||||||||||||| Sbjct: 8379 tgactctccgtccttgttcacggcaatgtatgtaagagaagggaatgccttgctcttctc 8320 Query: 428 gatgagttggtccagcttctccttagcgcanaagaattcgacgtaggccttttggtaaac 487 || || || ||||||||||| || | || ||||| || | |||||||| |||||||| Sbjct: 8319 aattagctgatccagcttctcttttgaacagaagaactcaagataggccttctggtaaac 8260 Query: 488 atagcctnctggaccgccccatcc 511 ||||||| | ||||| |||||||| Sbjct: 8259 atagcctccaggaccaccccatcc 8236 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 96 atctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgacc 155 ||||||||||| || || ||||| || ||| |||||||||| ||||||||||| || ||| Sbjct: 8982 atctccttgaacgccgcgaagagatcaccgttgatgtagtcgttgtccacaagactaacc 8923 Query: 156 aggcaataggtcttctgcacctg 178 | | | ||| ||||||| ||||| Sbjct: 8922 aagaagtagctcttctggacctg 8900
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 194 bits (98), Expect = 2e-46 Identities = 267/324 (82%) Strand = Plus / Plus Query: 188 ctccctggatgagtcaccctccgggaacaggcaggcccatcccctggaccagatctcaaa 247 |||||| |||||||| ||||| ||||||||||| ||||| ||| | ||||| || || || Sbjct: 33955153 ctccctagatgagtcgccctcagggaacaggcaagcccaaccctttgaccaaatttcgaa 33955212 Query: 248 cgcttcatctttccaaaccatgaagctcgccgagtcaacgacggtaggctggatgatctc 307 ||||| |||||||||||||| ||||| || ||||||||||| || ||||||| || || Sbjct: 33955213 agcttcgtctttccaaaccataaagctggctgagtcaacgacagttggctggactatttc 33955272 Query: 308 cttgccggggaacacgccccaagtgacagcgttcacggcgttcgcagggatgtttgagat 367 |||||| ||||| || ||||| ||||| || ||||| ||||| | || |||||||||| Sbjct: 33955273 cttgccagggaaaacaccccatgtgaccgcattcacagcgtttgtgggaatgtttgagaa 33955332 Query: 368 cgattccccttccttgttcaccgcgatgtatgtgagggaagggaatgccttgctcttctc 427 || || || ||||||||||| || |||||||| || ||||||||||||||||||||||| Sbjct: 33955333 tgactctccgtccttgttcacggcaatgtatgtaagagaagggaatgccttgctcttctc 33955392 Query: 428 gatgagttggtccagcttctccttagcgcanaagaattcgacgtaggccttttggtaaac 487 || || || ||||||||||| || | || ||||| || | |||||||| |||||||| Sbjct: 33955393 aattagctgatccagcttctcttttgaacagaagaactcaagataggccttctggtaaac 33955452 Query: 488 atagcctnctggaccgccccatcc 511 ||||||| | ||||| |||||||| Sbjct: 33955453 atagcctccaggaccaccccatcc 33955476 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 96 atctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgacc 155 ||||||||||| || || ||||| || ||| |||||||||| ||||||||||| || ||| Sbjct: 33954730 atctccttgaacgccgcgaagagatcaccgttgatgtagtcgttgtccacaagactaacc 33954789 Query: 156 aggcaataggtcttctgcacctg 178 | | | ||| ||||||| ||||| Sbjct: 33954790 aagaagtagctcttctggacctg 33954812
>gb|BT019001.1| Zea mays clone Contig489.F mRNA sequence Length = 509 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 101 cttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgaccaggca 160 |||||| |||||||| |||||||| || |||||| ||||| ||||||||||||||| | Sbjct: 407 cttgaaggcagcaaacaggtccccctggacgtagtcgttgtcaacaaggctgaccaggta 466 Query: 161 ataggtcttctgcacctgctct 182 ||||||||||| |||| |||| Sbjct: 467 gtaggtcttctgaaccttctct 488
>ref|XM_362588.1| Magnaporthe grisea 70-15 hypothetical protein (MG08171.4) partial mRNA Length = 2073 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 302 gatctccttgccggggaacacgccccaagtgacagcgttc 341 |||||||||||| ||||| |||||||||||||| |||||| Sbjct: 1866 gatctccttgccagggaaaacgccccaagtgacggcgttc 1827
>gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 12, complete sequence Length = 906719 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 306 tccttgccggggaacacgccccaagtgacagcgtt 340 |||||||||||||| || ||||||||||||||||| Sbjct: 349895 tccttgccggggaagacaccccaagtgacagcgtt 349929
>ref|XM_568023.1| Cryptococcus neoformans var. neoformans JEC21 methylenetetrahydrofolate reductase (NADPH) (CNL04820) partial mRNA Length = 2382 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 306 tccttgccggggaacacgccccaagtgacagcgtt 340 |||||||||||||| || ||||||||||||||||| Sbjct: 1777 tccttgccggggaagacaccccaagtgacagcgtt 1743
>dbj|AK058876.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-G01, full insert sequence Length = 304 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Minus Query: 96 atctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaag 148 ||||||||||| || || ||||| || ||| |||||||||| ||||||||||| Sbjct: 95 atctccttgaacgccgcgaagagatcaccgttgatgtagtcgttgtccacaag 43
>ref|XM_953671.1| Neurospora crassa OR74A hypothetical protein (NCU09545.1) partial mRNA Length = 2046 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 306 tccttgccggggaacacgcccca 328 ||||||||||||||||||||||| Sbjct: 1835 tccttgccggggaacacgcccca 1813
>ref|XM_329903.1| Neurospora crassa OR74A hypothetical protein (NCU09545.1) partial mRNA Length = 2046 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 306 tccttgccggggaacacgcccca 328 ||||||||||||||||||||||| Sbjct: 1835 tccttgccggggaacacgcccca 1813
>emb|BX842620.1| Neurospora crassa DNA linkage group V BAC contig B11E5 Length = 191196 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 306 tccttgccggggaacacgcccca 328 ||||||||||||||||||||||| Sbjct: 122798 tccttgccggggaacacgcccca 122776
>gb|AC140347.3| Mus musculus BAC clone RP23-233K3 from chromosome 7, complete sequence Length = 153366 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 128 gatgtagtcattgtccacaagg 149 |||||||||||||||||||||| Sbjct: 100255 gatgtagtcattgtccacaagg 100234
>ref|XM_535405.2| PREDICTED: Canis familiaris similar to Methylenetetrahydrofolate reductase (LOC478230), mRNA Length = 2343 Score = 44.1 bits (22), Expect = 0.52 Identities = 70/86 (81%) Strand = Plus / Minus Query: 249 gcttcatctttccaaaccatgaagctcgccgagtcaacgacggtaggctggatgatctcc 308 |||||||| ||||| | ||||||||| | | ||| || || |||||||||||||||||| Sbjct: 2135 gcttcatccttccagaacatgaagctgacagggtctaccaccgtaggctggatgatctcc 2076 Query: 309 ttgccggggaacacgccccaagtgac 334 || ||||| | |||||||||||| Sbjct: 2075 cgccccgggaagatgccccaagtgac 2050
>gb|AC154911.4| Mus musculus BAC clone RP23-25I3 from chromosome 7, complete sequence Length = 228885 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 128 gatgtagtcattgtccacaagg 149 |||||||||||||||||||||| Sbjct: 205668 gatgtagtcattgtccacaagg 205647
>ref|NM_180393.1| Arabidopsis thaliana MTHFR1; methylenetetrahydrofolate reductase (NADPH) AT3G59970 (MTHFR1) transcript variant AT3G59970.2 mRNA, complete cds Length = 1708 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 234 gaccagatctcaaacgcttcatctttcca 262 ||||| |||||||||||||| |||||||| Sbjct: 1412 gaccaaatctcaaacgcttcgtctttcca 1384
>ref|NM_115860.2| Arabidopsis thaliana MTHFR1; methylenetetrahydrofolate reductase (NADPH) AT3G59970 (MTHFR1) transcript variant AT3G59970.3 mRNA, complete cds Length = 2021 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 234 gaccagatctcaaacgcttcatctttcca 262 ||||| |||||||||||||| |||||||| Sbjct: 1725 gaccaaatctcaaacgcttcgtctttcca 1697
>ref|NM_180392.1| Arabidopsis thaliana MTHFR1; methylenetetrahydrofolate reductase (NADPH) AT3G59970 (MTHFR1) transcript variant AT3G59970.1 mRNA, complete cds Length = 2116 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 234 gaccagatctcaaacgcttcatctttcca 262 ||||| |||||||||||||| |||||||| Sbjct: 1820 gaccaaatctcaaacgcttcgtctttcca 1792
>ref|XM_594291.2| PREDICTED: Bos taurus hypothetical LOC516149 (LOC516149), mRNA Length = 855 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gccttgctcttctcgatgagt 434 ||||||||||||||||||||| Sbjct: 338 gccttgctcttctcgatgagt 318
>gb|BC110162.1| Bos taurus hypothetical LOC516149, mRNA (cDNA clone MGC:134373 IMAGE:8063959), complete cds Length = 907 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gccttgctcttctcgatgagt 434 ||||||||||||||||||||| Sbjct: 427 gccttgctcttctcgatgagt 407
>gb|BC084479.1| Xenopus tropicalis hypothetical LOC496500, mRNA (cDNA clone MGC:89385 IMAGE:6989070), complete cds Length = 1891 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 435 tggtccagcttctccttagcg 455 ||||||||||||||||||||| Sbjct: 461 tggtccagcttctccttagcg 441
>gb|AY122922.1| Arabidopsis thaliana putative methylenetetrahydrofolate reductase MTHFR1 (At3g59970) mRNA, complete cds Length = 1810 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 234 gaccagatctcaaacgcttcatctttcca 262 ||||| |||||||||||||| |||||||| Sbjct: 1643 gaccaaatctcaaacgcttcgtctttcca 1615
>gb|AY070034.1| Arabidopsis thaliana putative methylenetetrahydrofolate reductase MTHFR1 (At3g59970) mRNA, complete cds Length = 2002 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 234 gaccagatctcaaacgcttcatctttcca 262 ||||| |||||||||||||| |||||||| Sbjct: 1725 gaccaaatctcaaacgcttcgtctttcca 1697
>emb|AL138647.1|ATF24G16 Arabidopsis thaliana DNA chromosome 3, BAC clone F24G16 Length = 100906 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 234 gaccagatctcaaacgcttcatctttcca 262 ||||| |||||||||||||| |||||||| Sbjct: 86925 gaccaaatctcaaacgcttcgtctttcca 86897
>gb|AF441241.2| Synthetic construct chimera1 mRNA, complete cds Length = 1785 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 234 gaccagatctcaaacgcttcatctttcca 262 ||||| |||||||||||||| |||||||| Sbjct: 1649 gaccaaatctcaaacgcttcgtctttcca 1621
>emb|BX825865.1|CNS0A52W Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL69ZD01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 485 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 234 gaccagatctcaaacgcttcatctttcca 262 ||||| |||||||||||||| |||||||| Sbjct: 191 gaccaaatctcaaacgcttcgtctttcca 163
>gb|AF181966.1|AF181966 Arabidopsis thaliana methylenetetrahydrofolate reductase MTHFR1 mRNA, complete cds Length = 1994 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 234 gaccagatctcaaacgcttcatctttcca 262 ||||| |||||||||||||| |||||||| Sbjct: 1705 gaccaaatctcaaacgcttcgtctttcca 1677
>gb|AC147818.2| Xenopus tropicalis clone CH216-10M9, complete sequence Length = 58071 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 atgtatgtgagggaagggaa 412 |||||||||||||||||||| Sbjct: 56135 atgtatgtgagggaagggaa 56116
>ref|XM_500349.1| Yarrowia lipolytica CLIB122, YALI0B00572g predicted mRNA Length = 1752 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 294 ggctggatgatctccttgccgggg 317 |||||||||| ||||||||||||| Sbjct: 1550 ggctggatgacctccttgccgggg 1527
>emb|AL450267.10| Human DNA sequence from clone RP11-344B23 on chromosome 9 Contains the 3' end of the PAX5 gene for paired box gene 5 (B-cell lineage specific activator protein) (BSAP), complete sequence Length = 125110 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 ggaacaggcaggcccatcccctgg 234 |||| ||||||||||||||||||| Sbjct: 51971 ggaagaggcaggcccatcccctgg 51948
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 gaatgccttgctcttctcga 429 |||||||||||||||||||| Sbjct: 2736127 gaatgccttgctcttctcga 2736146
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 caggcccatcccctggaccagatc 242 ||||||||||||| |||||||||| Sbjct: 2852036 caggcccatcccccggaccagatc 2852059
>gb|AC153616.8| Mus musculus 6 BAC RP23-328I7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 195332 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cttctgcacctgctctagca 186 |||||||||||||||||||| Sbjct: 169133 cttctgcacctgctctagca 169114
>gb|AC115003.18| Mus musculus chromosome 6, clone RP24-179P9, complete sequence Length = 168290 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 cttctgcacctgctctagca 186 |||||||||||||||||||| Sbjct: 159242 cttctgcacctgctctagca 159261
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 ggctggatgatctccttgccgggg 317 |||||||||| ||||||||||||| Sbjct: 52211 ggctggatgacctccttgccgggg 52234 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,795,940 Number of Sequences: 3902068 Number of extensions: 3795940 Number of successful extensions: 70127 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69973 Number of HSP's gapped (non-prelim): 147 length of query: 593 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 570 effective length of database: 17,143,297,704 effective search space: 9771679691280 effective search space used: 9771679691280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
