ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23k20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 97.6 bits (49), Expect = 1e-17 Identities = 116/138 (84%), Gaps = 4/138 (2%) Strand = Plus / Plus Query: 3 actnaaacattggtagagccaaggagactgcgtgagctgatacatnatgcctcttgctct 62 ||| |||||||| |||||||||||||| ||| ||||||||| ||| |||||||||||||| Sbjct: 19559695 acttaaacattgatagagccaaggagattgcatgagctgat-catcatgcctcttgctct 19559753 Query: 63 catgttgaaacctcnggnttacactggactcggggaatcggtgctgccctgactctgatn 122 ||| |||||||| || |||| ||||||| ||||| | ||||| | ||||||||| Sbjct: 19559754 cattctgaaaccttagggctacattggactcagggaacc---gctgctccgactctgatt 19559810 Query: 123 cagcagaagtcgatgatg 140 ||||||||||||| |||| Sbjct: 19559811 cagcagaagtcgacgatg 19559828
>dbj|AK099463.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023H09, full insert sequence Length = 768 Score = 97.6 bits (49), Expect = 1e-17 Identities = 116/138 (84%), Gaps = 4/138 (2%) Strand = Plus / Minus Query: 3 actnaaacattggtagagccaaggagactgcgtgagctgatacatnatgcctcttgctct 62 ||| |||||||| |||||||||||||| ||| ||||||||| ||| |||||||||||||| Sbjct: 625 acttaaacattgatagagccaaggagattgcatgagctgat-catcatgcctcttgctct 567 Query: 63 catgttgaaacctcnggnttacactggactcggggaatcggtgctgccctgactctgatn 122 ||| |||||||| || |||| ||||||| ||||| | ||||| | ||||||||| Sbjct: 566 cattctgaaaccttagggctacattggactcagggaacc---gctgctccgactctgatt 510 Query: 123 cagcagaagtcgatgatg 140 ||||||||||||| |||| Sbjct: 509 cagcagaagtcgacgatg 492
>dbj|AK069349.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023017L09, full insert sequence Length = 809 Score = 97.6 bits (49), Expect = 1e-17 Identities = 116/138 (84%), Gaps = 4/138 (2%) Strand = Plus / Minus Query: 3 actnaaacattggtagagccaaggagactgcgtgagctgatacatnatgcctcttgctct 62 ||| |||||||| |||||||||||||| ||| ||||||||| ||| |||||||||||||| Sbjct: 655 acttaaacattgatagagccaaggagattgcatgagctgat-catcatgcctcttgctct 597 Query: 63 catgttgaaacctcnggnttacactggactcggggaatcggtgctgccctgactctgatn 122 ||| |||||||| || |||| ||||||| ||||| | ||||| | ||||||||| Sbjct: 596 cattctgaaaccttagggctacattggactcagggaacc---gctgctccgactctgatt 540 Query: 123 cagcagaagtcgatgatg 140 ||||||||||||| |||| Sbjct: 539 cagcagaagtcgacgatg 522
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 97.6 bits (49), Expect = 1e-17 Identities = 116/138 (84%), Gaps = 4/138 (2%) Strand = Plus / Plus Query: 3 actnaaacattggtagagccaaggagactgcgtgagctgatacatnatgcctcttgctct 62 ||| |||||||| |||||||||||||| ||| ||||||||| ||| |||||||||||||| Sbjct: 19485908 acttaaacattgatagagccaaggagattgcatgagctgat-catcatgcctcttgctct 19485966 Query: 63 catgttgaaacctcnggnttacactggactcggggaatcggtgctgccctgactctgatn 122 ||| |||||||| || |||| ||||||| ||||| | ||||| | ||||||||| Sbjct: 19485967 cattctgaaaccttagggctacattggactcagggaacc---gctgctccgactctgatt 19486023 Query: 123 cagcagaagtcgatgatg 140 ||||||||||||| |||| Sbjct: 19486024 cagcagaagtcgacgatg 19486041
>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144596 Score = 97.6 bits (49), Expect = 1e-17 Identities = 116/138 (84%), Gaps = 4/138 (2%) Strand = Plus / Plus Query: 3 actnaaacattggtagagccaaggagactgcgtgagctgatacatnatgcctcttgctct 62 ||| |||||||| |||||||||||||| ||| ||||||||| ||| |||||||||||||| Sbjct: 91876 acttaaacattgatagagccaaggagattgcatgagctgat-catcatgcctcttgctct 91934 Query: 63 catgttgaaacctcnggnttacactggactcggggaatcggtgctgccctgactctgatn 122 ||| |||||||| || |||| ||||||| ||||| | ||||| | ||||||||| Sbjct: 91935 cattctgaaaccttagggctacattggactcagggaacc---gctgctccgactctgatt 91991 Query: 123 cagcagaagtcgatgatg 140 ||||||||||||| |||| Sbjct: 91992 cagcagaagtcgacgatg 92009
>gb|AY355958.1| Canis familiaris isolate cOR13M3 olfactory receptor family 13 subfamily M-like gene, partial sequence Length = 654 Score = 42.1 bits (21), Expect = 0.68 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 ggtgctgccctgactctgatncag 125 |||||||||||||||||||| ||| Sbjct: 637 ggtgctgccctgactctgatgcag 614 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 819,360 Number of Sequences: 3902068 Number of extensions: 819360 Number of successful extensions: 56995 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56941 Number of HSP's gapped (non-prelim): 44 length of query: 211 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 189 effective length of database: 17,147,199,772 effective search space: 3240820756908 effective search space used: 3240820756908 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
