Clone Name | rbasd23k11 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_465527.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1913 Score = 311 bits (157), Expect = 2e-81 Identities = 277/317 (87%) Strand = Plus / Minus Query: 355 tcagtaaataccaggaacaaccctgtaaggtactctgttgcagtacatcttccagtactt 414 ||||||||| ||||||| ||||||| | |||||| ||||||||||||||||||| ||||| Sbjct: 1504 tcagtaaatgccaggaataaccctgcacggtactttgttgcagtacatcttccaatactt 1445 Query: 415 gccgtactttgttgagcatctatcatcatccctcttcgctcggtcaagcagtagaatggt 474 ||| ||||||| |||||||| ||||||||||| || |||||||| | ||| | ||||| Sbjct: 1444 gccatactttgatgagcatcggtcatcatcccttttagctcggtcgaacagcaatatggt 1385 Query: 475 cagaaatatcacatagaagtatggcataaaatgagtgaaaagagctggaacggtccagaa 534 |||||| |||||||||||||| |||| |||||| |||||||||||||| |||||||| Sbjct: 1384 cagaaagatcacatagaagtacggcaggaaatgatcaaaaagagctggaactgtccagaa 1325 Query: 535 aaatgctgctaggatctctggggcatagtgaaagtgacgagaaaagccccaccatccaga 594 ||| || | ||| |||||||| |||||||||| |||||||| ||||||||||||||||| Sbjct: 1324 aaaagcagatagaatctctggaacatagtgaaaatgacgagacaagccccaccatccaga 1265 Query: 595 agtcaagagaagactggtttttgtttctccctttgttgtctgataggaagcaataatctt 654 |||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |||||| Sbjct: 1264 agtcaagagaagactgctttttgtttctccatttgtagtctgataggaagcaacaatctt 1205 Query: 655 tgacggggctttgcccc 671 || || |||||||||| Sbjct: 1204 agatggagctttgcccc 1188
>dbj|AK100199.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038E06, full insert sequence Length = 1911 Score = 311 bits (157), Expect = 2e-81 Identities = 277/317 (87%) Strand = Plus / Minus Query: 355 tcagtaaataccaggaacaaccctgtaaggtactctgttgcagtacatcttccagtactt 414 ||||||||| ||||||| ||||||| | |||||| ||||||||||||||||||| ||||| Sbjct: 1502 tcagtaaatgccaggaataaccctgcacggtactttgttgcagtacatcttccaatactt 1443 Query: 415 gccgtactttgttgagcatctatcatcatccctcttcgctcggtcaagcagtagaatggt 474 ||| ||||||| |||||||| ||||||||||| || |||||||| | ||| | ||||| Sbjct: 1442 gccatactttgatgagcatcggtcatcatcccttttagctcggtcgaacagcaatatggt 1383 Query: 475 cagaaatatcacatagaagtatggcataaaatgagtgaaaagagctggaacggtccagaa 534 |||||| |||||||||||||| |||| |||||| |||||||||||||| |||||||| Sbjct: 1382 cagaaagatcacatagaagtacggcaggaaatgatcaaaaagagctggaactgtccagaa 1323 Query: 535 aaatgctgctaggatctctggggcatagtgaaagtgacgagaaaagccccaccatccaga 594 ||| || | ||| |||||||| |||||||||| |||||||| ||||||||||||||||| Sbjct: 1322 aaaagcagatagaatctctggaacatagtgaaaatgacgagacaagccccaccatccaga 1263 Query: 595 agtcaagagaagactggtttttgtttctccctttgttgtctgataggaagcaataatctt 654 |||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |||||| Sbjct: 1262 agtcaagagaagactgctttttgtttctccatttgtagtctgataggaagcaacaatctt 1203 Query: 655 tgacggggctttgcccc 671 || || |||||||||| Sbjct: 1202 agatggagctttgcccc 1186
>gb|BT019183.1| Zea mays clone Contig854.F mRNA sequence Length = 916 Score = 295 bits (149), Expect = 1e-76 Identities = 275/317 (86%) Strand = Plus / Minus Query: 355 tcagtaaataccaggaacaaccctgtaaggtactctgttgcagtacatcttccagtactt 414 ||||||||| ||||||| || ||||| |||||| |||||||||| |||||||||||||| Sbjct: 539 tcagtaaatgccaggaatgactctgtatggtactttgttgcagtaaatcttccagtactt 480 Query: 415 gccgtactttgttgagcatctatcatcatccctcttcgctcggtcaagcagtagaatggt 474 |||||||||| |||||| | |||||||||||||| |||||||||| || || || || Sbjct: 479 cccgtactttgatgagcaccggtcatcatccctctttgctcggtcaaacaataatatagt 420 Query: 475 cagaaatatcacatagaagtatggcataaaatgagtgaaaagagctggaacggtccagaa 534 |||||| ||||| ||||||||||| | || ||| |||||||||||||||| |||||||| Sbjct: 419 cagaaagatcacgtagaagtatggtaggaagtgattgaaaagagctggaacagtccagaa 360 Query: 535 aaatgctgctaggatctctggggcatagtgaaagtgacgagaaaagccccaccatccaga 594 |||||| | ||| ||||||||| ||||||| |||||||| || ||||||||||||||||| Sbjct: 359 aaatgcagatagtatctctgggacatagtggaagtgacgtgacaagccccaccatccaga 300 Query: 595 agtcaagagaagactggtttttgtttctccctttgttgtctgataggaagcaataatctt 654 ||||||||||||||||||||| |||||||||||||| |||||||| || |||| |||||| Sbjct: 299 agtcaagagaagactggttttagtttctccctttgtagtctgataagaggcaacaatctt 240 Query: 655 tgacggggctttgcccc 671 || || || ||||||| Sbjct: 239 agatggagccttgcccc 223
>gb|AY105566.1| Zea mays PCO110886 mRNA sequence Length = 1863 Score = 295 bits (149), Expect = 1e-76 Identities = 275/317 (86%) Strand = Plus / Minus Query: 355 tcagtaaataccaggaacaaccctgtaaggtactctgttgcagtacatcttccagtactt 414 ||||||||| ||||||| || ||||| |||||| |||||||||| |||||||||||||| Sbjct: 1455 tcagtaaatgccaggaatgactctgtatggtactttgttgcagtaaatcttccagtactt 1396 Query: 415 gccgtactttgttgagcatctatcatcatccctcttcgctcggtcaagcagtagaatggt 474 |||||||||| |||||| | |||||||||||||| |||||||||| || || || || Sbjct: 1395 cccgtactttgatgagcaccggtcatcatccctctttgctcggtcaaacaataatatagt 1336 Query: 475 cagaaatatcacatagaagtatggcataaaatgagtgaaaagagctggaacggtccagaa 534 |||||| ||||| ||||||||||| | || ||| |||||||||||||||| |||||||| Sbjct: 1335 cagaaagatcacgtagaagtatggtaggaagtgattgaaaagagctggaacagtccagaa 1276 Query: 535 aaatgctgctaggatctctggggcatagtgaaagtgacgagaaaagccccaccatccaga 594 |||||| | ||| ||||||||| ||||||| |||||||| || ||||||||||||||||| Sbjct: 1275 aaatgcagatagtatctctgggacatagtggaagtgacgtgacaagccccaccatccaga 1216 Query: 595 agtcaagagaagactggtttttgtttctccctttgttgtctgataggaagcaataatctt 654 ||||||||||||||||||||| |||||||||||||| |||||||| || |||| |||||| Sbjct: 1215 agtcaagagaagactggttttagtttctccctttgtagtctgataagaggcaacaatctt 1156 Query: 655 tgacggggctttgcccc 671 || || || ||||||| Sbjct: 1155 agatggagccttgcccc 1139
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 105 bits (53), Expect = 2e-19 Identities = 65/69 (94%) Strand = Plus / Plus Query: 585 accatccagaagtcaagagaagactggtttttgtttctccctttgttgtctgataggaag 644 |||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| Sbjct: 15742512 accatccagaagtcaagagaagactgctttttgtttctccatttgtagtctgataggaag 15742571 Query: 645 caataatct 653 ||| ||||| Sbjct: 15742572 caacaatct 15742580 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Plus Query: 512 aaaagagctggaacggtccagaaaaatgctgctaggatctctggggcatagtgaaagtga 571 |||||||||||||| ||||||||||| || | ||| |||||||| |||||||||| ||| Sbjct: 15742320 aaaagagctggaactgtccagaaaaaagcagatagaatctctggaacatagtgaaaatga 15742379 Query: 572 cgagaaaagccccacc 587 ||||| |||||||||| Sbjct: 15742380 cgagacaagccccacc 15742395 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 355 tcagtaaataccaggaacaaccctgtaaggtactctgttgcagtacatcttccagtactt 414 ||||||||| ||||||| ||||||| | |||||| ||||||||||||||||||| ||||| Sbjct: 15741493 tcagtaaatgccaggaataaccctgcacggtactttgttgcagtacatcttccaatactt 15741552 Query: 415 gcc 417 ||| Sbjct: 15741553 gcc 15741555 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 419 tactttgttgagcatctatcatcatccctcttcgctcggtcaagcagtagaatggtcaga 478 ||||||| |||||||| ||||||||||| || |||||||| | ||| | ||||||||| Sbjct: 15742152 tactttgatgagcatcggtcatcatcccttttagctcggtcgaacagcaatatggtcaga 15742211 Query: 479 aatatcacatagaagtatggca 500 || |||||||||||||| |||| Sbjct: 15742212 aagatcacatagaagtacggca 15742233
>dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1342_D02 Length = 125460 Score = 105 bits (53), Expect = 2e-19 Identities = 65/69 (94%) Strand = Plus / Plus Query: 585 accatccagaagtcaagagaagactggtttttgtttctccctttgttgtctgataggaag 644 |||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| Sbjct: 452 accatccagaagtcaagagaagactgctttttgtttctccatttgtagtctgataggaag 511 Query: 645 caataatct 653 ||| ||||| Sbjct: 512 caacaatct 520 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Plus Query: 512 aaaagagctggaacggtccagaaaaatgctgctaggatctctggggcatagtgaaagtga 571 |||||||||||||| ||||||||||| || | ||| |||||||| |||||||||| ||| Sbjct: 260 aaaagagctggaactgtccagaaaaaagcagatagaatctctggaacatagtgaaaatga 319 Query: 572 cgagaaaagccccacc 587 ||||| |||||||||| Sbjct: 320 cgagacaagccccacc 335 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 419 tactttgttgagcatctatcatcatccctcttcgctcggtcaagcagtagaatggtcaga 478 ||||||| |||||||| ||||||||||| || |||||||| | ||| | ||||||||| Sbjct: 92 tactttgatgagcatcggtcatcatcccttttagctcggtcgaacagcaatatggtcaga 151 Query: 479 aatatcacatagaagtatggca 500 || |||||||||||||| |||| Sbjct: 152 aagatcacatagaagtacggca 173
>dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0035A24 Length = 176446 Score = 105 bits (53), Expect = 2e-19 Identities = 65/69 (94%) Strand = Plus / Plus Query: 585 accatccagaagtcaagagaagactggtttttgtttctccctttgttgtctgataggaag 644 |||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| Sbjct: 151199 accatccagaagtcaagagaagactgctttttgtttctccatttgtagtctgataggaag 151258 Query: 645 caataatct 653 ||| ||||| Sbjct: 151259 caacaatct 151267 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Plus Query: 512 aaaagagctggaacggtccagaaaaatgctgctaggatctctggggcatagtgaaagtga 571 |||||||||||||| ||||||||||| || | ||| |||||||| |||||||||| ||| Sbjct: 151007 aaaagagctggaactgtccagaaaaaagcagatagaatctctggaacatagtgaaaatga 151066 Query: 572 cgagaaaagccccacc 587 ||||| |||||||||| Sbjct: 151067 cgagacaagccccacc 151082 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 355 tcagtaaataccaggaacaaccctgtaaggtactctgttgcagtacatcttccagtactt 414 ||||||||| ||||||| ||||||| | |||||| ||||||||||||||||||| ||||| Sbjct: 150180 tcagtaaatgccaggaataaccctgcacggtactttgttgcagtacatcttccaatactt 150239 Query: 415 gcc 417 ||| Sbjct: 150240 gcc 150242 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 419 tactttgttgagcatctatcatcatccctcttcgctcggtcaagcagtagaatggtcaga 478 ||||||| |||||||| ||||||||||| || |||||||| | ||| | ||||||||| Sbjct: 150839 tactttgatgagcatcggtcatcatcccttttagctcggtcgaacagcaatatggtcaga 150898 Query: 479 aatatcacatagaagtatggca 500 || |||||||||||||| |||| Sbjct: 150899 aagatcacatagaagtacggca 150920
>gb|AY700050.1| Morus alba sterol delta-7 reductase (Dwf5) mRNA, partial cds Length = 864 Score = 77.8 bits (39), Expect = 4e-11 Identities = 96/115 (83%) Strand = Plus / Minus Query: 510 tgaaaagagctggaacggtccagaaaaatgctgctaggatctctggggcatagtgaaagt 569 |||||||||||||||| ||||||||||| || |||| || ||||| |||||||||| | Sbjct: 793 tgaaaagagctggaacagtccagaaaaaggcagctaatatttctggtacatagtgaaaat 734 Query: 570 gacgagaaaagccccaccatccagaagtcaagagaagactggtttttgtttctcc 624 | ||||| || |||||||||||||| || || |||| || ||||||||||||| Sbjct: 733 gccgagataatccccaccatccagaggttaaaagaatgctattttttgtttctcc 679
>gb|AF417293.1| Castanea sativa putative delta-7-sterol reductase mRNA, partial cds Length = 538 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 431 catctatcatcatccctcttcgctcggtcaagcagtagaatggtcagaaatatcacatag 490 |||| |||||||||||| || |||||||||| || || || || ||||||||||||||| Sbjct: 128 catcgatcatcatccctttttgctcggtcaaaaagaaggatagtaagaaatatcacatag 69 Query: 491 aagtatggcataaaatgagtgaaaagagctggaacggtccagaa 534 ||| | || | |||||| | || |||||||| ||||||||||| Sbjct: 68 aagaaaggtaggaaatgattaaagagagctgggacggtccagaa 25
>gb|AY465906.1| Tropaeolum majus sterol delta-7 reductase mRNA, complete cds Length = 1604 Score = 56.0 bits (28), Expect = 2e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 403 cttccagtacttgccgtactttgttgagcatctatcatcatccctcttcgctcggtcaag 462 |||||||||||| || ||||| | | ||||| |||||||| || || |||||||||| Sbjct: 1296 cttccagtactttccatacttggatctgcatcggtcatcatctcttttggctcggtcaaa 1237 Query: 463 cagtagaatggtcagaaatatcacatagaagtatggcataaaatgagtgaaaagagctgg 522 || || ||||| || || | ||| |||||||| || | || |||| ||||||||||||| Sbjct: 1236 gagaaggatggtaaggaacaccacgtagaagtacggaagaacatgattgaaaagagctgg 1177 Query: 523 aacggtccagaa 534 ||||||||||| Sbjct: 1176 gacggtccagaa 1165
>gb|BT014090.1| Lycopersicon esculentum clone 133194F, mRNA sequence Length = 1512 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 510 tgaaaagagctggaacggtccagaaaaatgctgctaggatctctggggcatagtgaaagt 569 ||||||||||||| || ||||||||||||| |||| || ||||| ||||||| || | Sbjct: 1179 tgaaaagagctggtacactccagaaaaatgccgctaatatttctggaacatagtggaaat 1120 Query: 570 gacgagaaaagccccaccatcc 591 | |||| |||||||||||||| Sbjct: 1119 ggcgagctaagccccaccatcc 1098
>ref|NM_103926.3| Arabidopsis thaliana DWF5 (DWARF 5); sterol delta7 reductase AT1G50430 (DWF5) mRNA, complete cds Length = 1612 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 581 ccccaccatccagaagtcaagagaagactggtttttgtttc 621 |||||||||||||| || ||||||||||| ||||| ||||| Sbjct: 1157 ccccaccatccagacgttaagagaagactagttttagtttc 1117
>gb|BT000245.1| Arabidopsis thaliana sterol delta7 reductase (At1g50430) mRNA, complete cds Length = 1401 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 581 ccccaccatccagaagtcaagagaagactggtttttgtttc 621 |||||||||||||| || ||||||||||| ||||| ||||| Sbjct: 1073 ccccaccatccagacgttaagagaagactagttttagtttc 1033
>gb|AY099589.1| Arabidopsis thaliana sterol delta7 reductase (At1g50430) mRNA, complete cds Length = 1547 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 581 ccccaccatccagaagtcaagagaagactggtttttgtttc 621 |||||||||||||| || ||||||||||| ||||| ||||| Sbjct: 1124 ccccaccatccagacgttaagagaagactagttttagtttc 1084
>gb|DQ122179.1| Gossypium hirsutum sterol delta-7 reductase DWF5 mRNA, complete cds Length = 1666 Score = 50.1 bits (25), Expect = 0.010 Identities = 145/185 (78%) Strand = Plus / Minus Query: 437 tcatcatccctcttcgctcggtcaagcagtagaatggtcagaaatatcacatagaagtat 496 |||||||||||||| |||||||| | | || ||||| ||||| | || ||||||||| Sbjct: 1271 tcatcatccctcttggctcggtcgaataagaggatggtaagaaacacgacgtagaagtat 1212 Query: 497 ggcataaaatgagtgaaaagagctggaacggtccagaaaaatgctgctaggatctctggg 556 |||| |||||| |||| | ||| ||||| ||||| || ||||| |||| || ||||| Sbjct: 1211 ggcagaaaatggttgaataaagccggaacagtccaaaagaatgcagctaatatttctggc 1152 Query: 557 gcatagtgaaagtgacgagaaaagccccaccatccagaagtcaagagaagactggttttt 616 |||| || || ||||||| || | ||||||||| || || || ||||| |||||||| Sbjct: 1151 acataatggaaatgacgagccaaacaccaccatcccgatgttaaaagaaggctggttttg 1092 Query: 617 gtttc 621 ||||| Sbjct: 1091 gtttc 1087
>emb|BX814766.1|CNS0ADP2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB93ZC07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1549 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 581 ccccaccatccagaagtcaagagaagactggtttttgtttc 621 |||||||||||||| || ||||||||||| ||||| ||||| Sbjct: 1157 ccccaccatccagacgttaagagaagactagttttagtttc 1117
>emb|BX816975.1|CNS0ADC4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH79ZD11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 569 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 581 ccccaccatccagaagtcaagagaagactggtttttgtttc 621 |||||||||||||| || ||||||||||| ||||| ||||| Sbjct: 138 ccccaccatccagacgttaagagaagactagttttagtttc 98
>emb|BX815520.1|CNS0ACRS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS69ZH02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1484 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 581 ccccaccatccagaagtcaagagaagactggtttttgtttc 621 |||||||||||||| || ||||||||||| ||||| ||||| Sbjct: 1097 ccccaccatccagacgttaagagaagactagttttagtttc 1057
>emb|BX815483.1|CNS0ACUG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS65ZC11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1382 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 581 ccccaccatccagaagtcaagagaagactggtttttgtttc 621 |||||||||||||| || ||||||||||| ||||| ||||| Sbjct: 1118 ccccaccatccagacgttaagagaagactagttttagtttc 1078
>emb|BX815400.1|CNS0ACTM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS57ZH04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1486 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 581 ccccaccatccagaagtcaagagaagactggtttttgtttc 621 |||||||||||||| || ||||||||||| ||||| ||||| Sbjct: 1147 ccccaccatccagacgttaagagaagactagttttagtttc 1107
>emb|BX815175.1|CNS0ACTH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS3ZC11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1558 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 581 ccccaccatccagaagtcaagagaagactggtttttgtttc 621 |||||||||||||| || ||||||||||| ||||| ||||| Sbjct: 1159 ccccaccatccagacgttaagagaagactagttttagtttc 1119
>emb|BX818511.1|CNS0ACIW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL83ZC04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1437 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 581 ccccaccatccagaagtcaagagaagactggtttttgtttc 621 |||||||||||||| || ||||||||||| ||||| ||||| Sbjct: 1153 ccccaccatccagacgttaagagaagactagttttagtttc 1113
>gb|U49398.1|ATU49398 Arabidopsis thaliana sterol delta-7 reductase (ST7R) mRNA, complete cds Length = 1497 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Minus Query: 581 ccccaccatccagaagtcaagagaagactggtttttgtttc 621 |||||||||||||| || ||||||||||| ||||| ||||| Sbjct: 1148 ccccaccatccagacgttaagagaagactagttttagtttc 1108
>gb|M27821.1|MZENAR Maize NADH:nitrate reductase (NR) mRNA, 3' end Length = 2126 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 406 ccagtacttgccgtactttgttg 428 ||||||||||||||||||||||| Sbjct: 411 ccagtacttgccgtactttgttg 389
>gb|AF523077.1| Acacia lycopodiifolia trnK gene, partial sequence; and maturase-like protein gene, partial cds; chloroplast genes for chloroplast products Length = 2034 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Plus Query: 150 aaaatcatgtgaaaaagcttgataca 175 |||||||| ||||||||||||||||| Sbjct: 1821 aaaatcatatgaaaaagcttgataca 1846
>gb|AF523076.1| Acacia adoxa chloroplast trnK gene, intron sequence; and maturase-like sequence Length = 2443 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Plus Query: 150 aaaatcatgtgaaaaagcttgataca 175 |||||||| ||||||||||||||||| Sbjct: 1807 aaaatcatatgaaaaagcttgataca 1832
>gb|DQ371879.1| Acacia lycopodifolia voucher CANB 615616 trnK gene, partial sequence; chloroplast Length = 1981 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Plus Query: 150 aaaatcatgtgaaaaagcttgataca 175 |||||||| ||||||||||||||||| Sbjct: 1768 aaaatcatatgaaaaagcttgataca 1793
>gb|AF239701.1| Arabidopsis thaliana sterol delta7 reductase (DWARF5) gene, complete cds Length = 4880 Score = 44.1 bits (22), Expect = 0.59 Identities = 34/38 (89%) Strand = Plus / Minus Query: 584 caccatccagaagtcaagagaagactggtttttgtttc 621 ||||||||||| || ||||||||||| ||||| ||||| Sbjct: 3561 caccatccagacgttaagagaagactagttttagtttc 3524
>gb|AC074124.4| Homo sapiens BAC clone RP11-763F8 from 4, complete sequence Length = 165723 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 601 gagaagactggtttttgtttct 622 |||||||||||||||||||||| Sbjct: 95641 gagaagactggtttttgtttct 95662
>gb|AC012561.2|AC012561 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence Length = 105733 Score = 44.1 bits (22), Expect = 0.59 Identities = 34/38 (89%) Strand = Plus / Minus Query: 584 caccatccagaagtcaagagaagactggtttttgtttc 621 ||||||||||| || ||||||||||| ||||| ||||| Sbjct: 94366 caccatccagacgttaagagaagactagttttagtttc 94329
>gb|AC129552.20| Mus musculus chromosome 5, clone RP24-122N24, complete sequence Length = 153520 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 500 ataaaatgagtgaaaagagctggaa 524 ||||||||| ||||||||||||||| Sbjct: 2701 ataaaatgaatgaaaagagctggaa 2725
>gb|AC103975.9| Homo sapiens chromosome 15, clone RP11-1001M11, complete sequence Length = 213676 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 390 tgttgcagtacatcttccagt 410 ||||||||||||||||||||| Sbjct: 40499 tgttgcagtacatcttccagt 40519
>gb|AC091523.23| Mus musculus strain C57BL/6J clone rp23-77a8 map 1, complete sequence Length = 235509 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 81 taaaaacctagagaacatagctctc 105 |||||||||||| |||||||||||| Sbjct: 172389 taaaaacctagaaaacatagctctc 172413
>gb|AC158228.3| Mus musculus chromosome 5, clone RP23-118K12, complete sequence Length = 208055 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 600 agagaagactggtttttgttt 620 ||||||||||||||||||||| Sbjct: 21087 agagaagactggtttttgttt 21067
>gb|AC158930.3| Mus musculus chromosome 1, clone RP23-244J9, complete sequence Length = 214509 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 81 taaaaacctagagaacatagctctc 105 |||||||||||| |||||||||||| Sbjct: 10877 taaaaacctagaaaacatagctctc 10901
>gb|AC163270.5| Mus musculus chromosome 1, clone RP24-292B21, complete sequence Length = 154928 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 aagagtagttcattttcattt 134 ||||||||||||||||||||| Sbjct: 99239 aagagtagttcattttcattt 99219
>gb|AC022748.10| Homo sapiens chromosome 15, clone RP11-160C18, complete sequence Length = 163642 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 tgttgcagtacatcttccagt 410 ||||||||||||||||||||| Sbjct: 102897 tgttgcagtacatcttccagt 102877
>gb|AC182398.3| Pan troglodytes BAC clone CH251-119B5 from chromosome 15, complete sequence Length = 150565 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 tgttgcagtacatcttccagt 410 ||||||||||||||||||||| Sbjct: 7016 tgttgcagtacatcttccagt 6996
>gb|AC101455.9| Mus musculus chromosome 1, clone RP23-185E17, complete sequence Length = 185594 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 aagagtagttcattttcattt 134 ||||||||||||||||||||| Sbjct: 139078 aagagtagttcattttcattt 139098
>gb|AC068338.14| Homo sapiens chromosome 15, clone RP11-817O13, complete sequence Length = 174192 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 tgttgcagtacatcttccagt 410 ||||||||||||||||||||| Sbjct: 64285 tgttgcagtacatcttccagt 64265
>gb|AC105137.17| Homo sapiens chromosome 15, clone CTD-2562G15, complete sequence Length = 178059 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 390 tgttgcagtacatcttccagt 410 ||||||||||||||||||||| Sbjct: 8091 tgttgcagtacatcttccagt 8111
>emb|BX005036.6| Mouse DNA sequence from clone RP23-185E17 on chromosome 1, complete sequence Length = 185591 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 aagagtagttcattttcattt 134 ||||||||||||||||||||| Sbjct: 139075 aagagtagttcattttcattt 139095
>gb|AC114984.18| Mus musculus chromosome 18, clone RP23-248F9, complete sequence Length = 185563 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 484 cacatagaagtatggcataa 503 |||||||||||||||||||| Sbjct: 94605 cacatagaagtatggcataa 94586
>gb|DQ481668.1| Takifugu rubripes HoxDa gene cluster, complete sequence Length = 366816 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 501 taaaatgagtgaaaagagctggaa 524 ||||||||||||||| |||||||| Sbjct: 239741 taaaatgagtgaaaatagctggaa 239764
>emb|BX677675.9| Zebrafish DNA sequence from clone DKEYP-90G12 in linkage group 2, complete sequence Length = 124301 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 catcaaagtgaaactagaga 51 |||||||||||||||||||| Sbjct: 31501 catcaaagtgaaactagaga 31520
>gb|AC132357.3| Mus musculus BAC clone RP24-120G2 from chromosome 18, complete sequence Length = 189088 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 cacatagaagtatggcataa 503 |||||||||||||||||||| Sbjct: 65721 cacatagaagtatggcataa 65740
>gb|AE014303.1| Homo sapiens chromosome 13q34 schizophrenia region contig 2 section 3 of 3 of the complete sequence Length = 209806 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 cataaaatgagtgaaaagag 518 |||||||||||||||||||| Sbjct: 5507 cataaaatgagtgaaaagag 5526
>gb|AC150314.5| Mus musculus BAC clone RP23-269O24 from chromosome 10, complete sequence Length = 243006 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 ctttgttgagcatctatcat 440 |||||||||||||||||||| Sbjct: 59877 ctttgttgagcatctatcat 59896
>emb|AL160153.11| Human DNA sequence from clone RP11-397O8 on chromosome 13 Contains the 3' end of the ITGBL1 gene for integrin, beta-like 1 (with EGF-like repeat domains), a novel gene, the 3' end of the FGF14 gene for fibroblast growth factor 14 and a high-mobility group box 1 (HMGB1) pseudogene, complete sequence Length = 147607 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 cataaaatgagtgaaaagag 518 |||||||||||||||||||| Sbjct: 57272 cataaaatgagtgaaaagag 57291
>gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, complete sequence Length = 238662 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 cacatagaagtatggcataa 503 |||||||||||||||||||| Sbjct: 34163 cacatagaagtatggcataa 34182
>emb|BX294154.1| Pirellula sp. strain 1 complete genome; segment 22/24 Length = 299050 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 gctggaacggtccagaaaaa 537 |||||||||||||||||||| Sbjct: 78896 gctggaacggtccagaaaaa 78915
>emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 209982 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 aaaaataaaaacctagagaa 95 |||||||||||||||||||| Sbjct: 41464 aaaaataaaaacctagagaa 41445
>emb|CR860142.1| Pongo pygmaeus mRNA; cDNA DKFZp469G1019 (from clone DKFZp469G1019) Length = 3770 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 572 cgagaaaagccccaccatccagaa 595 |||| ||||||||||||||||||| Sbjct: 1728 cgagcaaagccccaccatccagaa 1705
>emb|CR556722.7| Zebrafish DNA sequence from clone CH211-195N12 in linkage group 13, complete sequence Length = 205873 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 603 gaagactggtttttgtttct 622 |||||||||||||||||||| Sbjct: 120664 gaagactggtttttgtttct 120645
>ref|XM_680543.1| PREDICTED: Danio rerio similar to Leucine zipper-EF-hand containing transmembrane protein 1, mitochondrial precursor (LOC557464), partial mRNA Length = 1296 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 603 gaagactggtttttgtttct 622 |||||||||||||||||||| Sbjct: 741 gaagactggtttttgtttct 760
>gb|AE008685.1|AE008685 Mus musculus T-cell receptor alpha/delta locus section 3 of 4 of the complete region Length = 400099 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 gaacaaccctgtaaggtact 388 |||||||||||||||||||| Sbjct: 243004 gaacaaccctgtaaggtact 242985
>gb|AE008684.1|AE008684 Mus musculus T-cell receptor alpha/delta locus section 2 of 4 of the complete region Length = 400099 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 gaacaaccctgtaaggtact 388 |||||||||||||||||||| Sbjct: 204838 gaacaaccctgtaaggtact 204819
>gb|AC008872.6| Homo sapiens chromosome 5 clone CTD-2198D21, complete sequence Length = 128703 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 351 ccattcagtaaataccaggaacaa 374 |||| ||||||||||||||||||| Sbjct: 9692 ccatgcagtaaataccaggaacaa 9715
>gb|AC158239.2| Mus musculus BAC clone RP23-48A24 from chromosome 10, complete sequence Length = 256496 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 ctttgttgagcatctatcat 440 |||||||||||||||||||| Sbjct: 28354 ctttgttgagcatctatcat 28335
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 agagtagttcattttcattt 134 |||||||||||||||||||| Sbjct: 16985920 agagtagttcattttcattt 16985901
>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0488D02 Length = 154537 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 agagtagttcattttcattt 134 |||||||||||||||||||| Sbjct: 115733 agagtagttcattttcattt 115714
>emb|BX119973.7| Zebrafish DNA sequence from clone RP71-77D7 in linkage group 13, complete sequence Length = 182073 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 603 gaagactggtttttgtttct 622 |||||||||||||||||||| Sbjct: 52012 gaagactggtttttgtttct 51993
>gb|AC005402.1|AC005402 Mus musculus clone UWGC:mbac37 from 14D1-D2 (T-Cell Receptor Alpha Locus), complete sequence Length = 132090 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 gaacaaccctgtaaggtact 388 |||||||||||||||||||| Sbjct: 111955 gaacaaccctgtaaggtact 111936
>gb|AC003997.1|AC003997 Mouse BAC mbac20 from 14D1-D2 (T-Cell Receptor Alpha Locus), complete sequence Length = 122176 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 gaacaaccctgtaaggtact 388 |||||||||||||||||||| Sbjct: 88417 gaacaaccctgtaaggtact 88398
>gb|AC140787.4| Mus musculus BAC clone RP23-411H17 from 10, complete sequence Length = 217336 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 ctttgttgagcatctatcat 440 |||||||||||||||||||| Sbjct: 88257 ctttgttgagcatctatcat 88238
>emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chromosome 4, complete sequence Length = 191676 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 597 tcaagagaagactggtttttgttt 620 ||||||||||||| |||||||||| Sbjct: 115144 tcaagagaagacttgtttttgttt 115121 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,956,370 Number of Sequences: 3902068 Number of extensions: 6956370 Number of successful extensions: 119474 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119255 Number of HSP's gapped (non-prelim): 219 length of query: 671 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 648 effective length of database: 17,143,297,704 effective search space: 11108856912192 effective search space used: 11108856912192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)