Clone Information

BLAST Search Result

Clone Name	rbasd23k09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AF104258.1\|AF104258 Festuca rubra putative copper-inducible 3...	240	5e-60
2	gb\|AC134236.4\| Oryza sativa (japonica cultivar-group) chromosome...	143	8e-31
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	143	8e-31
4	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	143	8e-31
5	gb\|AC134237.2\| Oryza sativa (japonica cultivar-group) chromosome...	143	8e-31
6	dbj\|AK103356.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	143	8e-31
7	dbj\|AK103522.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	143	8e-31
8	ref\|NM_187554.1\| Oryza sativa (japonica cultivar-group), predic...	78	4e-11
9	gb\|AY112342.1\| Zea mays CL10331_1 mRNA sequence	60	1e-05
10	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	46	0.14
11	gb\|AY424891.1\| Toxoplasma gondii UDP-N-acetyl-D-galactosamine:po...	44	0.57
12	gb\|AC140216.3\| Mus musculus BAC clone RP23-276B20 from chromosom...	42	2.3
13	gb\|AC175208.3\| Cavia porcellus clone CH234-14J14, complete sequence	42	2.3
14	emb\|BX321884.15\| Zebrafish DNA sequence from clone DKEYP-29A10 i...	42	2.3
15	gb\|AE005682.1\| Caulobacter crescentus CB15 section 8 of 359 of t...	42	2.3
16	gb\|AC099767.1\| Caenorhabditis briggsae cosmid G24F01, complete s...	42	2.3
17	gb\|AC161058.2\| Mus musculus BAC clone RP23-205J6 from chromosome...	42	2.3
18	gb\|AE005674.1\| Shigella flexneri 2a str. 301, complete genome	40	8.9
19	ref\|XM_615341.2\| PREDICTED: Bos taurus similar to dystonin isofo...	40	8.9
20	emb\|BX601645.15\| Zebrafish DNA sequence from clone CH211-207J7 i...	40	8.9
21	gb\|AC122910.5\| Mus musculus BAC clone RP23-54P3 from chromosome ...	40	8.9
22	gb\|AC122532.4\| Mus musculus BAC clone RP24-538A10 from chromosom...	40	8.9
23	gb\|AC125353.2\| Mus musculus BAC clone RP23-455B17 from 6, comple...	40	8.9
24	ref\|XM_947735.1\| Theileria annulata strain Ankara exonuclease 1 ...	40	8.9
25	gb\|AE014075.1\| Escherichia coli CFT073, complete genome	40	8.9
26	gb\|AC149494.4\| Medicago truncatula clone mth2-116m7, complete se...	40	8.9
27	gb\|CP000243.1\| Escherichia coli UTI89, complete genome	40	8.9
28	gb\|U00096.2\| Escherichia coli K-12 MG1655, complete genome	40	8.9
29	emb\|AL136442.12\| Human DNA sequence from clone RP11-25J23 on chr...	40	8.9
30	emb\|AL136111.10\| Human DNA sequence from clone RP13-73G13 on chr...	40	8.9
31	emb\|AL591146.21\| Mouse DNA sequence from clone RP23-252E4 on chr...	40	8.9
32	emb\|AL591410.8\| Mouse DNA sequence from clone RP23-96I2 on chrom...	40	8.9
33	gb\|AC131152.3\| Homo sapiens 3 BAC RP11-162E24 (Roswell Park Canc...	40	8.9
34	gb\|L19201.1\|ECOUW87 E. coli chromosomal region from 87.2 to 89.2...	40	8.9
35	dbj\|BS000648.1\| Pan troglodytes chromosome Y clone:PTB-526G10, c...	40	8.9
36	dbj\|AP009048.1\| Escherichia coli W3110 DNA, complete genome	40	8.9
37	gb\|AC023793.13\| Homo sapiens 3 BAC RP11-91F9 (Roswell Park Cance...	40	8.9
38	gb\|AC084766.8\| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genom...	40	8.9
39	emb\|BX294186.9\| Zebrafish DNA sequence from clone DKEY-170O10 in...	40	8.9
40	tpg\|BK001744.1\| TPA: TPA_exp: Suid herpesvirus 1, complete genome	40	8.9
41	tpg\|BK000083.1\| TPA: TPA_exp: Oryza sativa (japonica cultivar-gr...	40	8.9
42	gb\|AC093110.4\| Homo sapiens BAC clone RP11-564H16 from 2, comple...	40	8.9
43	gb\|AC073971.4\| Homo sapiens BAC clone RP11-168G24 from 2, comple...	40	8.9
44	gb\|AC073254.6\| Homo sapiens BAC clone RP11-176L22 from 2, comple...	40	8.9
45	gb\|AC011305.2\|AC011305 Homo sapiens BAC clone RP11-390E9 from Y,...	40	8.9
46	gb\|AE014073.1\| Shigella flexneri 2a str. 2457T, complete genome	40	8.9
47	emb\|BX544888.2\| Mouse DNA sequence from clone RP24-232N15 on chr...	40	8.9
48	gb\|AC083910.9\| Mus musculus 1 BAC RP23-337F12 (Roswell Park Canc...	40	8.9
49	gb\|AE005174.2\| Escherichia coli O157:H7 EDL933, complete genome	40	8.9
50	dbj\|BA000007.2\| Escherichia coli O157:H7 DNA, complete genome	40	8.9
51	gb\|CP000034.1\| Shigella dysenteriae Sd197, complete genome	40	8.9
52	gb\|M34651.1\|SH1PROIE Pseudorabies virus with upstream and downst...	40	8.9
53	gb\|CP000036.1\| Shigella boydii Sb227, complete genome	40	8.9
54	gb\|CP000038.1\| Shigella sonnei Ss046, complete genome	40	8.9
55	gb\|L04757.1\|ECOFPR Escherichia coli ferredoxin (flavodoxin) NADP...	40	8.9

>gb|AF104258.1|AF104258 Festuca rubra putative copper-inducible 35.6 kDa protein (Pmc733)
            mRNA, complete cds
          Length = 1754

 Score =  240 bits (121), Expect = 5e-60
 Identities = 154/165 (93%)
 Strand = Plus / Minus

                                                                        
Query: 488  atgtcaaacttgcaccggtaagccgtagttctggaatgacctgatgtggccatcccagct 547
            |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1333 atgtcaaaattgcaccggcaagccatagttctggaatgacctgatgtggccatcccagct 1274

                                                                        
Query: 548  tgcggtgactatgacctggccccaggcatgtgtggctgcattctggcaagacgccttcag 607
            |||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1273 tgcactgactatgacctggccccaggcatgtgtagctgcattctggcaagacgccttcag 1214

                                                         
Query: 608  gaacttgtactgcgatttacgcaacgtagatgccgtcgctgagtt 652
            |||||||||||| ||||||||||| ||||||| || | |||||||
Sbjct: 1213 gaacttgtactgagatttacgcaatgtagatgtcgccactgagtt 1169



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 52/54 (96%), Gaps = 2/54 (3%)
 Strand = Plus / Minus

                                                                  
Query: 307  ctacatacaacttatggtccacaagcatgttagcacaagaaaccagccatgtga 360
            ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 1544 ctacatacaacttatggtc-acaagcatgttagcacaag-aaccagccatgtga 1493

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>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0056G13, complete sequence
          Length = 148011

 Score =  143 bits (72), Expect = 8e-31
 Identities = 123/140 (87%)
 Strand = Plus / Minus

                                                                        
Query: 486  ccatgtcaaacttgcaccggtaagccgtagttctggaatgacctgatgtggccatcccag 545
            |||||||| |||||||| |||||||| ||||||||||| || ||||||| ||||||||||
Sbjct: 9845 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 9786

                                                                        
Query: 546  cttgcggtgactatgacctggccccaggcatgtgtggctgcattctggcaagacgccttc 605
            | ||| |  ||||| |||||||||||||| || || || |||||||||||||| ||||||
Sbjct: 9785 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 9726

                                
Query: 606  aggaacttgtactgcgattt 625
            |||||||||||||| |||||
Sbjct: 9725 aggaacttgtactgagattt 9706



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 286   gatcttggaggaccacccgggctacatacaacttatggtccacaagca 333
             ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 10031 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 9984

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  143 bits (72), Expect = 8e-31
 Identities = 123/140 (87%)
 Strand = Plus / Minus

                                                                          
Query: 486    ccatgtcaaacttgcaccggtaagccgtagttctggaatgacctgatgtggccatcccag 545
              |||||||| |||||||| |||||||| ||||||||||| || ||||||| ||||||||||
Sbjct: 853310 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 853251

                                                                          
Query: 546    cttgcggtgactatgacctggccccaggcatgtgtggctgcattctggcaagacgccttc 605
              | ||| |  ||||| |||||||||||||| || || || |||||||||||||| ||||||
Sbjct: 853250 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 853191

                                  
Query: 606    aggaacttgtactgcgattt 625
              |||||||||||||| |||||
Sbjct: 853190 aggaacttgtactgagattt 853171



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                              
Query: 286    gatcttggaggaccacccgggctacatacaacttatggtccacaagca 333
              ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 853496 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 853449



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 5        caacaaatcaaatgaatcca 24
                ||||||||||||||||||||
Sbjct: 14768820 caacaaatcaaatgaatcca 14768801

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score =  143 bits (72), Expect = 8e-31
 Identities = 123/140 (87%)
 Strand = Plus / Minus

                                                                          
Query: 486    ccatgtcaaacttgcaccggtaagccgtagttctggaatgacctgatgtggccatcccag 545
              |||||||| |||||||| |||||||| ||||||||||| || ||||||| ||||||||||
Sbjct: 853308 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 853249

                                                                          
Query: 546    cttgcggtgactatgacctggccccaggcatgtgtggctgcattctggcaagacgccttc 605
              | ||| |  ||||| |||||||||||||| || || || |||||||||||||| ||||||
Sbjct: 853248 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 853189

                                  
Query: 606    aggaacttgtactgcgattt 625
              |||||||||||||| |||||
Sbjct: 853188 aggaacttgtactgagattt 853169



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                              
Query: 286    gatcttggaggaccacccgggctacatacaacttatggtccacaagca 333
              ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 853494 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 853447



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 5        caacaaatcaaatgaatcca 24
                ||||||||||||||||||||
Sbjct: 14763354 caacaaatcaaatgaatcca 14763335

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>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090O10,
              complete sequence
          Length = 162132

 Score =  143 bits (72), Expect = 8e-31
 Identities = 123/140 (87%)
 Strand = Plus / Minus

                                                                          
Query: 486    ccatgtcaaacttgcaccggtaagccgtagttctggaatgacctgatgtggccatcccag 545
              |||||||| |||||||| |||||||| ||||||||||| || ||||||| ||||||||||
Sbjct: 148855 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 148796

                                                                          
Query: 546    cttgcggtgactatgacctggccccaggcatgtgtggctgcattctggcaagacgccttc 605
              | ||| |  ||||| |||||||||||||| || || || |||||||||||||| ||||||
Sbjct: 148795 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 148736

                                  
Query: 606    aggaacttgtactgcgattt 625
              |||||||||||||| |||||
Sbjct: 148735 aggaacttgtactgagattt 148716



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                              
Query: 286    gatcttggaggaccacccgggctacatacaacttatggtccacaagca 333
              ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 149041 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 148994

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>dbj|AK103356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126K20, full
            insert sequence
          Length = 4064

 Score =  143 bits (72), Expect = 8e-31
 Identities = 123/140 (87%)
 Strand = Plus / Minus

                                                                        
Query: 486  ccatgtcaaacttgcaccggtaagccgtagttctggaatgacctgatgtggccatcccag 545
            |||||||| |||||||| |||||||| ||||||||||| || ||||||| ||||||||||
Sbjct: 2534 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 2475

                                                                        
Query: 546  cttgcggtgactatgacctggccccaggcatgtgtggctgcattctggcaagacgccttc 605
            | ||| |  ||||| |||||||||||||| || || || |||||||||||||| ||||||
Sbjct: 2474 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 2415

                                
Query: 606  aggaacttgtactgcgattt 625
            |||||||||||||| |||||
Sbjct: 2414 aggaacttgtactgagattt 2395



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 286  gatcttggaggaccacccgggctacatacaacttatggtccacaagca 333
            ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 2720 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 2673

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>dbj|AK103522.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131K03, full
            insert sequence
          Length = 3088

 Score =  143 bits (72), Expect = 8e-31
 Identities = 123/140 (87%)
 Strand = Plus / Minus

                                                                        
Query: 486  ccatgtcaaacttgcaccggtaagccgtagttctggaatgacctgatgtggccatcccag 545
            |||||||| |||||||| |||||||| ||||||||||| || ||||||| ||||||||||
Sbjct: 2535 ccatgtcacacttgcacaggtaagccatagttctggaaggatctgatgtagccatcccag 2476

                                                                        
Query: 546  cttgcggtgactatgacctggccccaggcatgtgtggctgcattctggcaagacgccttc 605
            | ||| |  ||||| |||||||||||||| || || || |||||||||||||| ||||||
Sbjct: 2475 cctgcagccactattacctggccccaggcgtgcgtagcagcattctggcaagaagccttc 2416

                                
Query: 606  aggaacttgtactgcgattt 625
            |||||||||||||| |||||
Sbjct: 2415 aggaacttgtactgagattt 2396



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 286  gatcttggaggaccacccgggctacatacaacttatggtccacaagca 333
            ||||||| |||||||| | | ||||||||||||| |||||||||||||
Sbjct: 2721 gatcttgaaggaccactcagactacatacaacttctggtccacaagca 2674

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>ref|NM_187554.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2328

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                        
Query: 563  ctggccccaggcatgtgtggctgcattctggcaagacgccttcaggaacttgtactgcga 622
            |||||||||||| || || || |||||||||||||| |||||||||||||||||||| ||
Sbjct: 2160 ctggccccaggcgtgcgtagcagcattctggcaagaagccttcaggaacttgtactgaga 2101

               
Query: 623  ttt 625
            |||
Sbjct: 2100 ttt 2098

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>gb|AY112342.1| Zea mays CL10331_1 mRNA sequence
          Length = 630

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 502 ccggtaagccgtagttctggaatgacctgatgtggccatcccagcttgcggtgactat 559
           |||||||||| ||||||||||| |||||||| | ||||||||| | ||| ||||||||
Sbjct: 488 ccggtaagccatagttctggaacgacctgatcttgccatcccatcctgcagtgactat 545

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 63      ctccccgcccgccccgaccgacc 85
               |||||||||||||||||||||||
Sbjct: 4220409 ctccccgcccgccccgaccgacc 4220387

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>gb|AY424891.1| Toxoplasma gondii UDP-N-acetyl-D-galactosamine:polypeptide
            N-acetylgalactosaminyltransferase T2 gene, complete cds
          Length = 10000

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 160  gaacaacagagaaaacaaacat 181
            ||||||||||||||||||||||
Sbjct: 6229 gaacaacagagaaaacaaacat 6250

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>gb|AC140216.3| Mus musculus BAC clone RP23-276B20 from chromosome 5, complete sequence
          Length = 194560

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 401   caagctccagccagccaggcttctt 425
             ||||||||||||||||||| |||||
Sbjct: 24267 caagctccagccagccagggttctt 24291

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>gb|AC175208.3| Cavia porcellus clone CH234-14J14, complete sequence
          Length = 140345

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 240    gaagagggcctggctactgct 260
              |||||||||||||||||||||
Sbjct: 123138 gaagagggcctggctactgct 123158

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>emb|BX321884.15| Zebrafish DNA sequence from clone DKEYP-29A10 in linkage group 3,
             complete sequence
          Length = 173019

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 509   gccgtagttctggaatgacctgatg 533
             ||||||||||||||||||| |||||
Sbjct: 50046 gccgtagttctggaatgacatgatg 50070

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>gb|AE005682.1| Caulobacter crescentus CB15 section 8 of 359 of the complete genome
          Length = 10272

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 235  ccaaggaagagggcctggctactgc 259
            ||||||||||||||| |||||||||
Sbjct: 5283 ccaaggaagagggcccggctactgc 5307

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>gb|AC099767.1| Caenorhabditis briggsae cosmid G24F01, complete sequence
          Length = 23211

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 6    aacaaatcaaatgaatccaat 26
            |||||||||||||||||||||
Sbjct: 8312 aacaaatcaaatgaatccaat 8292

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>gb|AC161058.2| Mus musculus BAC clone RP23-205J6 from chromosome 5, complete sequence
          Length = 222180

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 401   caagctccagccagccaggcttctt 425
             ||||||||||||||||||| |||||
Sbjct: 67791 caagctccagccagccagggttctt 67767

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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 343     aagaaaccagccatgtgatg 362
               ||||||||||||||||||||
Sbjct: 4128845 aagaaaccagccatgtgatg 4128826

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>ref|XM_615341.2| PREDICTED: Bos taurus similar to dystonin isoform a (LOC535297), mRNA
          Length = 23670

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   tcaagctccagccagccagg 419
             ||||||||||||||||||||
Sbjct: 11416 tcaagctccagccagccagg 11435

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>emb|BX601645.15| Zebrafish DNA sequence from clone CH211-207J7 in linkage group 6,
              complete sequence
          Length = 223513

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    gcatcgtcgttgctggcggg 286
              ||||||||||||||||||||
Sbjct: 109466 gcatcgtcgttgctggcggg 109447

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>gb|AC122910.5| Mus musculus BAC clone RP23-54P3 from chromosome 6, complete
           sequence
          Length = 221390

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 117 atatgttcatccattctctcctat 140
           ||||||||||||||||| ||||||
Sbjct: 932 atatgttcatccattctgtcctat 955

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>gb|AC122532.4| Mus musculus BAC clone RP24-538A10 from chromosome 5, complete sequence
          Length = 174724

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 562   cctggccccaggcatgtgtg 581
             ||||||||||||||||||||
Sbjct: 45042 cctggccccaggcatgtgtg 45061

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>gb|AC125353.2| Mus musculus BAC clone RP23-455B17 from 6, complete sequence
          Length = 171963

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 117   atatgttcatccattctctcctat 140
             ||||||||||||||||| ||||||
Sbjct: 58005 atatgttcatccattctgtcctat 57982

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>ref|XM_947735.1| Theileria annulata strain Ankara exonuclease 1 (TA09295) partial
           mRNA
          Length = 2607

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 9   aaatcaaatgaatccaatat 28
           ||||||||||||||||||||
Sbjct: 445 aaatcaaatgaatccaatat 464

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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 343     aagaaaccagccatgtgatg 362
               ||||||||||||||||||||
Sbjct: 4633520 aagaaaccagccatgtgatg 4633501

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>gb|AC149494.4| Medicago truncatula clone mth2-116m7, complete sequence
          Length = 95710

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   acaacagagaaaacaaacat 181
             ||||||||||||||||||||
Sbjct: 58486 acaacagagaaaacaaacat 58467

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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 343     aagaaaccagccatgtgatg 362
               ||||||||||||||||||||
Sbjct: 4390824 aagaaaccagccatgtgatg 4390805

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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 343     aagaaaccagccatgtgatg 362
               ||||||||||||||||||||
Sbjct: 4111885 aagaaaccagccatgtgatg 4111866

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>emb|AL136442.12| Human DNA sequence from clone RP11-25J23 on chromosome 13 Contains the
             3' end of a novel gene (KIAA1165) (likely ortholog of
             mouse Nedd4 WW domain-binding protein 5A) and a novel
             gene, complete sequence
          Length = 157695

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   cgccccttctggtgaagcaa 470
             ||||||||||||||||||||
Sbjct: 66707 cgccccttctggtgaagcaa 66688

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>emb|AL136111.10| Human DNA sequence from clone RP13-73G13 on chromosome X Contains GSSs,
             complete sequence
          Length = 68759

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   agagaaaacaaacatcatca 186
             ||||||||||||||||||||
Sbjct: 26967 agagaaaacaaacatcatca 26948

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>emb|AL591146.21| Mouse DNA sequence from clone RP23-252E4 on chromosome 11 Contains the 3'
              end of the Myo1d gene for myosin ID, two novel genes, the
              Cdk5r gene for cyclin-dependent kinase 5 regulatory subunit
              (p35), the Psmd11 gene for non-ATPase proteasome (prosome,
              macropain) 26S subunit 11, the Zfp207 gene for zinc finger
              protein 207 and the 3' end of the Rhbdl4 gene for rhomboid
              veinlet-like 4 (Drosophila), complete sequence
          Length = 195208

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    gaaaacaaacatcatcaaga 189
              ||||||||||||||||||||
Sbjct: 193429 gaaaacaaacatcatcaaga 193410

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>emb|AL591410.8| Mouse DNA sequence from clone RP23-96I2 on chromosome 11 Contains part of
              the Myo1d gene for myosin ID, complete sequence
          Length = 231675

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    gaaaacaaacatcatcaaga 189
              ||||||||||||||||||||
Sbjct: 231455 gaaaacaaacatcatcaaga 231474

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>gb|AC131152.3| Homo sapiens 3 BAC RP11-162E24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 49714

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   atgttcatccattctctcct 138
             ||||||||||||||||||||
Sbjct: 32183 atgttcatccattctctcct 32164

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>gb|L19201.1|ECOUW87 E. coli chromosomal region from 87.2 to 89.2 minutes
          Length = 96484

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   aagaaaccagccatgtgatg 362
             ||||||||||||||||||||
Sbjct: 75495 aagaaaccagccatgtgatg 75476

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>dbj|BS000648.1| Pan troglodytes chromosome Y clone:PTB-526G10, complete sequences
          Length = 135606

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   agagaaaacaaacatcatca 186
             ||||||||||||||||||||
Sbjct: 82760 agagaaaacaaacatcatca 82741

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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 343     aagaaaccagccatgtgatg 362
               ||||||||||||||||||||
Sbjct: 3522819 aagaaaccagccatgtgatg 3522838

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>gb|AC023793.13| Homo sapiens 3 BAC RP11-91F9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 151230

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    caacagagaaaacaaacatc 182
              ||||||||||||||||||||
Sbjct: 123416 caacagagaaaacaaacatc 123397

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>gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genomic sequence, complete
              sequence
          Length = 130306

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      caacaaatcaaatgaatcca 24
              ||||||||||||||||||||
Sbjct: 107732 caacaaatcaaatgaatcca 107713

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>emb|BX294186.9| Zebrafish DNA sequence from clone DKEY-170O10 in linkage group 5,
              complete sequence
          Length = 143396

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      caacaaatcaaatgaatcca 24
              ||||||||||||||||||||
Sbjct: 137681 caacaaatcaaatgaatcca 137700

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>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 63     ctccccgcccgccccgaccgaccg 86
              |||||||||||||||| |||||||
Sbjct: 134946 ctccccgcccgccccgtccgaccg 134969



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 63     ctccccgcccgccccgaccgaccg 86
              |||||||||||||||| |||||||
Sbjct: 109656 ctccccgcccgccccgtccgaccg 109633

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>tpg|BK000083.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) cellulose
           synthase-like A5 gene, complete cds
          Length = 5430

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 5   caacaaatcaaatgaatcca 24
           ||||||||||||||||||||
Sbjct: 436 caacaaatcaaatgaatcca 455

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>gb|AC093110.4| Homo sapiens BAC clone RP11-564H16 from 2, complete sequence
          Length = 168550

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 407    ccagccagccaggcttcttg 426
              ||||||||||||||||||||
Sbjct: 129662 ccagccagccaggcttcttg 129681

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>gb|AC073971.4| Homo sapiens BAC clone RP11-168G24 from 2, complete sequence
          Length = 86077

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   tacaacttatggtccacaag 331
             ||||||||||||||||||||
Sbjct: 24442 tacaacttatggtccacaag 24423

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>gb|AC073254.6| Homo sapiens BAC clone RP11-176L22 from 2, complete sequence
          Length = 83528

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 562   cctggccccaggcatgtgtg 581
             ||||||||||||||||||||
Sbjct: 33565 cctggccccaggcatgtgtg 33546

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>gb|AC011305.2|AC011305 Homo sapiens BAC clone RP11-390E9 from Y, complete sequence
          Length = 69485

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 167  agagaaaacaaacatcatca 186
            ||||||||||||||||||||
Sbjct: 2457 agagaaaacaaacatcatca 2438

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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 343     aagaaaccagccatgtgatg 362
               ||||||||||||||||||||
Sbjct: 3644374 aagaaaccagccatgtgatg 3644393

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>emb|BX544888.2| Mouse DNA sequence from clone RP24-232N15 on chromosome 4, complete
             sequence
          Length = 68939

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 338   agcacaagaaaccagccatgtgat 361
             ||||||||||||||| ||||||||
Sbjct: 29566 agcacaagaaaccagacatgtgat 29543

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>gb|AC083910.9| Mus musculus 1 BAC RP23-337F12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208408

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    ggaacaacagagaaaacaaa 178
              ||||||||||||||||||||
Sbjct: 174223 ggaacaacagagaaaacaaa 174204

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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 343     aagaaaccagccatgtgatg 362
               ||||||||||||||||||||
Sbjct: 4982585 aagaaaccagccatgtgatg 4982566

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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 343     aagaaaccagccatgtgatg 362
               ||||||||||||||||||||
Sbjct: 4913821 aagaaaccagccatgtgatg 4913802

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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 343     aagaaaccagccatgtgatg 362
               ||||||||||||||||||||
Sbjct: 3556835 aagaaaccagccatgtgatg 3556854

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>gb|M34651.1|SH1PROIE Pseudorabies virus with upstream and downsteam sequences
          Length = 15141

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 63   ctccccgcccgccccgaccgaccg 86
            |||||||||||||||| |||||||
Sbjct: 3370 ctccccgcccgccccgtccgaccg 3393

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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 343     aagaaaccagccatgtgatg 362
               ||||||||||||||||||||
Sbjct: 3967437 aagaaaccagccatgtgatg 3967418

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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 343     aagaaaccagccatgtgatg 362
               ||||||||||||||||||||
Sbjct: 4327903 aagaaaccagccatgtgatg 4327884

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>gb|L04757.1|ECOFPR Escherichia coli ferredoxin (flavodoxin) NADP+ reductase (fpr)
           gene, complete cds
          Length = 878

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 343 aagaaaccagccatgtgatg 362
           ||||||||||||||||||||
Sbjct: 655 aagaaaccagccatgtgatg 674


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,328,351
Number of Sequences: 3902068
Number of extensions: 5328351
Number of successful extensions: 117328
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116731
Number of HSP's gapped (non-prelim): 595
length of query: 652
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 629
effective length of database: 17,143,297,704
effective search space: 10783134255816
effective search space used: 10783134255816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result