ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23k07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYT1_MOUSE (Q8CFC2) Myelin transcription factor 1 (MyT1) (Neural... 30 3.9
2MYT1_HUMAN (Q01538) Myelin transcription factor 1 (MyT1) (MyTI) ... 30 3.9
3UREE_SYNEL (Q8DJ62) Urease accessory protein ureE 29 8.6
4MYT1_XENLA (P70047) Myelin transcription factor 1 (X-MyT1) 29 8.6

>MYT1_MOUSE (Q8CFC2) Myelin transcription factor 1 (MyT1) (Neural zinc finger|
            factor 2) (NZF-2)
          Length = 1127

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 527  EEEAINSEVQSQRVSWAMDLKGLEAKKKVLEEQGPVALESFHGLLDITLQ 378
            E EA   ++QSQ  S   +LK +E + K++EEQ         GL    +Q
Sbjct: 1022 EMEAAMVQLQSQISSMEKNLKNIEEENKLIEEQNEALFLELSGLSQALIQ 1071



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>MYT1_HUMAN (Q01538) Myelin transcription factor 1 (MyT1) (MyTI) (Proteolipid|
            protein-binding protein) (PLPB1)
          Length = 1121

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 527  EEEAINSEVQSQRVSWAMDLKGLEAKKKVLEEQGPVALESFHGLLDITLQ 378
            E EA   ++QSQ  S   +LK +E + K++EEQ         GL    +Q
Sbjct: 1020 EMEAAMVQLQSQISSMEKNLKNIEEENKLIEEQNEALFLELSGLSQALIQ 1069



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>UREE_SYNEL (Q8DJ62) Urease accessory protein ureE|
          Length = 144

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -2

Query: 252 RMSGRLHCHFDRELSIYLSILGQKLVLYVGQVMRVLSLV*MITVCRKERPWL 97
           R   RLHCH D   S+YL  L + + L  G  +R      ++TV  K  P L
Sbjct: 27  RCRRRLHCHSDEGESLYLK-LPRGITLQPGDRLRDEDATVIVTVHAKPEPTL 77



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>MYT1_XENLA (P70047) Myelin transcription factor 1 (X-MyT1)|
          Length = 1122

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 530  MEEEAINSEVQSQRVSWAMDLKGLEAKKKVLEEQGPVALESFHGL 396
            ME + +N  +QSQ  +   +LK +E + KV+EEQ         GL
Sbjct: 1018 MEADMVN--LQSQITTMEKNLKNIEEENKVIEEQNEALFVELSGL 1060


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,425,201
Number of Sequences: 219361
Number of extensions: 1449253
Number of successful extensions: 3910
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3909
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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