>emb|X63052.1|HVCP29 Hordeum vulgare gene for CP29 precursor for core chlorophyll a/b
            binding (CAB) protein of photosystem II (PSII)
          Length = 2689

 Score =  180 bits (91), Expect = 5e-43
 Identities = 97/100 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    gccgnagttcgcgccaaacttgttgagcgcctnggggatgatgaatccggcggcgccgag 60
            |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1649 gccgcagttcgcgccaaacttgttgagcgcctcggggatgatgaatccggcggcgccgag 1590

                                                    
Query: 61   catggnccacctggcatggatgagctcaaaggcctggtac 100
            ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1589 catggcccacctggcatggatgagctcaaaggcctggtac 1550

>dbj|AK104824.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F05, full
           insert sequence
          Length = 1157

 Score =  117 bits (59), Expect = 6e-24
 Identities = 92/104 (88%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccgnagttcgcgccaaacttgttgagcgcctnggggatgatgaatccggcggcgccgag 60
           |||| |||| |||||||||||||||   |||| |||||||||||| || |||||||||||
Sbjct: 525 gccgcagtttgcgccaaacttgttgcaggcctcggggatgatgaacccagcggcgccgag 466

                                                       
Query: 61  catggnccacctggcatggatgagctcaaaggcctggtacttgg 104
           ||| | ||||||||||||||| |||||| |||||||||||||||
Sbjct: 465 catcgcccacctggcatggatcagctcataggcctggtacttgg 422

>dbj|AK098872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001B10, full
           insert sequence
          Length = 1101

 Score =  117 bits (59), Expect = 6e-24
 Identities = 92/104 (88%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccgnagttcgcgccaaacttgttgagcgcctnggggatgatgaatccggcggcgccgag 60
           |||| |||| |||||||||||||||   |||| |||||||||||| || |||||||||||
Sbjct: 515 gccgcagtttgcgccaaacttgttgcaggcctcggggatgatgaacccagcggcgccgag 456

                                                       
Query: 61  catggnccacctggcatggatgagctcaaaggcctggtacttgg 104
           ||| | ||||||||||||||| |||||| |||||||||||||||
Sbjct: 455 catcgcccacctggcatggatcagctcataggcctggtacttgg 412

>dbj|AK061295.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D05, full
           insert sequence
          Length = 1186

 Score =  117 bits (59), Expect = 6e-24
 Identities = 92/104 (88%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccgnagttcgcgccaaacttgttgagcgcctnggggatgatgaatccggcggcgccgag 60
           |||| |||| |||||||||||||||   |||| |||||||||||| || |||||||||||
Sbjct: 526 gccgcagtttgcgccaaacttgttgcaggcctcggggatgatgaacccagcggcgccgag 467

                                                       
Query: 61  catggnccacctggcatggatgagctcaaaggcctggtacttgg 104
           ||| | ||||||||||||||| |||||| |||||||||||||||
Sbjct: 466 catcgcccacctggcatggatcagctcataggcctggtacttgg 423

>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0091I11, complete sequence
          Length = 135993

 Score =  109 bits (55), Expect = 2e-21
 Identities = 88/100 (88%)
 Strand = Plus / Minus

                                                                         
Query: 1     gccgnagttcgcgccaaacttgttgagcgcctnggggatgatgaatccggcggcgccgag 60
             |||| |||| |||||||||||||||   |||| |||||||||||| || |||||||||||
Sbjct: 39307 gccgcagtttgcgccaaacttgttgcaggcctcggggatgatgaacccagcggcgccgag 39248

                                                     
Query: 61    catggnccacctggcatggatgagctcaaaggcctggtac 100
             ||| | ||||||||||||||| |||||| |||||||||||
Sbjct: 39247 catcgcccacctggcatggatcagctcataggcctggtac 39208

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  109 bits (55), Expect = 2e-21
 Identities = 88/100 (88%)
 Strand = Plus / Minus

                                                                           
Query: 1       gccgnagttcgcgccaaacttgttgagcgcctnggggatgatgaatccggcggcgccgag 60
               |||| |||| |||||||||||||||   |||| |||||||||||| || |||||||||||
Sbjct: 7580221 gccgcagtttgcgccaaacttgttgcaggcctcggggatgatgaacccagcggcgccgag 7580162

                                                       
Query: 61      catggnccacctggcatggatgagctcaaaggcctggtac 100
               ||| | ||||||||||||||| |||||| |||||||||||
Sbjct: 7580161 catcgcccacctggcatggatcagctcataggcctggtac 7580122

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  109 bits (55), Expect = 2e-21
 Identities = 88/100 (88%)
 Strand = Plus / Minus

                                                                           
Query: 1       gccgnagttcgcgccaaacttgttgagcgcctnggggatgatgaatccggcggcgccgag 60
               |||| |||| |||||||||||||||   |||| |||||||||||| || |||||||||||
Sbjct: 7650308 gccgcagtttgcgccaaacttgttgcaggcctcggggatgatgaacccagcggcgccgag 7650249

                                                       
Query: 61      catggnccacctggcatggatgagctcaaaggcctggtac 100
               ||| | ||||||||||||||| |||||| |||||||||||
Sbjct: 7650248 catcgcccacctggcatggatcagctcataggcctggtac 7650209

>gb|AY105650.1| Zea mays PCO135935 mRNA sequence
          Length = 1366

 Score = 65.9 bits (33), Expect = 2e-08
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                   
Query: 50  gcggcgccgagcatggnccacctggcatggatgagctcaaaggcctggtacttggc 105
           ||||| |||||||||| ||| ||||||||||| |||||  ||||||||||||||||
Sbjct: 561 gcggcaccgagcatggcccatctggcatggatcagctcgtaggcctggtacttggc 506

>gb|U23189.1|ZMU23189 Zea mays chlorophyll a/b-binding apoprotein CP26 (Lhcb5-2) mRNA,
           complete cds
          Length = 1073

 Score = 65.9 bits (33), Expect = 2e-08
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                   
Query: 50  gcggcgccgagcatggnccacctggcatggatgagctcaaaggcctggtacttggc 105
           ||||| |||||||||| ||| ||||||||||| |||||  ||||||||||||||||
Sbjct: 417 gcggcaccgagcatggcccatctggcatggatcagctcgtaggcctggtacttggc 362

>gb|U23188.1|ZMU23188 Zea mays chlorophyll a/b-binding apoprotein CP26 (Lhcb5-1) mRNA,
           complete cds
          Length = 957

 Score = 65.9 bits (33), Expect = 2e-08
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                   
Query: 50  gcggcgccgagcatggnccacctggcatggatgagctcaaaggcctggtacttggc 105
           ||||| |||||||||| ||| ||||||||||| |||||  ||||||||||||||||
Sbjct: 419 gcggcaccgagcatggcccatctggcatggatcagctcgtaggcctggtacttggc 364

>emb|AL713870.26| Mouse DNA sequence from clone RP24-239D8 on chromosome 11 Contains the
             5' end of the Slc36a3 gene for solute carrier family 36
             (proton/amino acid symporter) member 3, two novel genes,
             the Tramd1 gene for tramdorin 1 (transmembrane domain rich
             protein), the Slc36a1 gene for solute carrier family 36
             (proton/amino acid symporter) member 1 and the gene for
             the ortholog of human and rat FAT tumor suppressor homolog
             2 (Drosophila) FAT2, complete sequence
          Length = 188782

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    gatgagctcaaaggcctggt 98
             ||||||||||||||||||||
Sbjct: 56492 gatgagctcaaaggcctggt 56511

>dbj|AB122115.1| Chlamydomonas reinhardtii LhcI-2 gene for light-harvesting
            chlorophyll-a/b protein of photosystem I (Type III),
            complete cds
          Length = 2389

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 47   ccggcggcgccgagcatggncca 69
            ||||||||||||||||||| |||
Sbjct: 1177 ccggcggcgccgagcatggccca 1155

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     gaatccggcggcgccgagca 62
              ||||||||||||||||||||
Sbjct: 668416 gaatccggcggcgccgagca 668435

>ref|XM_865969.1| PREDICTED: Bos taurus similar to chromosome 9 open reading frame
           90, transcript variant 2 (LOC510689), mRNA
          Length = 1735

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 87  caaaggcctggtacttggc 105
           |||||||||||||||||||
Sbjct: 65  caaaggcctggtacttggc 83

>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 42      tgaatccggcggcgccgagcatg 64
               ||||| |||||||||||||||||
Sbjct: 5465100 tgaattcggcggcgccgagcatg 5465078

>gb|AC139335.3| Mus musculus BAC clone RP23-376N11 from chromosome 10, complete sequence
          Length = 195132

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 84     gctcaaaggcctggtactt 102
              |||||||||||||||||||
Sbjct: 123861 gctcaaaggcctggtactt 123843

>emb|CR378680.1| Photobacterium profundum SS9 chromosome 2; segment 6/7
          Length = 349751

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 73     ggcatggatgagctcaaag 91
              |||||||||||||||||||
Sbjct: 153461 ggcatggatgagctcaaag 153443

>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29
          Length = 314100

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     gatgaatccggcggcgccg 58
              |||||||||||||||||||
Sbjct: 201550 gatgaatccggcggcgccg 201568

>gb|AC087863.10| Homo sapiens 12q BAC RP11-357K6 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 179876

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 74    gcatggatgagctcaaagg 92
             |||||||||||||||||||
Sbjct: 92708 gcatggatgagctcaaagg 92726

>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                        
Query: 19     cttgttgagcgcctnggggatgatga 44
              ||||||||||| || |||||||||||
Sbjct: 745022 cttgttgagcggctcggggatgatga 745047

>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence
          Length = 210614

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    gatgaatccggcggcgccg 58
             |||||||||||||||||||
Sbjct: 44010 gatgaatccggcggcgccg 44028

>gb|AC147634.3| Mus musculus BAC clone RP23-305G22 from 10, complete sequence
          Length = 207157

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 84     gctcaaaggcctggtactt 102
              |||||||||||||||||||
Sbjct: 184145 gctcaaaggcctggtactt 184163


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 553,723
Number of Sequences: 3902068
Number of extensions: 553723
Number of successful extensions: 35490
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35313
Number of HSP's gapped (non-prelim): 177
length of query: 105
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 84
effective length of database: 17,151,101,840
effective search space: 1440692554560
effective search space used: 1440692554560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)