Clone Information

BLAST Search Result

Clone Name	rbasd23j23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK119708.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	214	2e-52
2	dbj\|AK060981.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	214	2e-52
3	gb\|AY103814.1\| Zea mays PCO099562 mRNA sequence	194	2e-46
4	gb\|AC134924.2\| Oryza sativa (japonica cultivar-group) chromosome...	178	1e-41
5	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	178	1e-41
6	dbj\|AK111295.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	178	1e-41
7	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	178	1e-41
8	gb\|AF467730.1\| Oryza sativa putative dormancy-asociated protein ...	174	2e-40
9	gb\|AC169374.2\| Sorghum bicolor clone SB_BBc0019I06, complete seq...	139	1e-29
10	gb\|AY973621.1\| Manihot esculenta auxin-repressed protein-like pr...	76	1e-10
11	gb\|AY973620.1\| Manihot esculenta auxin-repressed protein-like pr...	76	1e-10
12	gb\|L15194.1\| Malus x domestica unknown mRNA	56	1e-04
13	gb\|AF336307.1\|AF336307 Malus x domestica auxin-repressed protein...	56	1e-04
14	ref\|NM_128942.2\| Arabidopsis thaliana unknown protein AT2G33830 ...	52	0.002
15	ref\|NM_179889.1\| Arabidopsis thaliana unknown protein AT2G33830 ...	52	0.002
16	gb\|AF361846.1\| Arabidopsis thaliana At2g33830/T1B8.13 mRNA, comp...	52	0.002
17	gb\|AY066049.1\| Arabidopsis thaliana At2g33830/T1B8.13 mRNA, comp...	52	0.002
18	gb\|AY085689.1\| Arabidopsis thaliana clone 1711 mRNA, complete se...	52	0.002
19	dbj\|AB050786.1\| Arabidopsis thaliana mRNA for Dormancy-associate...	52	0.002
20	gb\|AY185352.1\| Brassica rapa subsp. pekinensis auxin-repressed p...	48	0.027
21	emb\|AJ867392.1\| Triticum aestivum mRNA for glycosyltransferase (...	44	0.43
22	emb\|CR396593.6\| Zebrafish DNA sequence from clone CH211-194G1 in...	44	0.43
23	ref\|NM_170650.2\| Drosophila melanogaster Myosin heavy chain-like...	44	0.43
24	ref\|NM_169703.1\| Drosophila melanogaster Myosin heavy chain-like...	44	0.43
25	ref\|NM_169701.1\| Drosophila melanogaster Myosin heavy chain-like...	44	0.43
26	ref\|NM_169700.1\| Drosophila melanogaster Myosin heavy chain-like...	44	0.43
27	ref\|NM_169699.1\| Drosophila melanogaster Myosin heavy chain-like...	44	0.43
28	gb\|AY069747.1\| Drosophila melanogaster LP08646 full length cDNA	44	0.43
29	gb\|AY051503.1\| Drosophila melanogaster GH15471 full length cDNA	44	0.43
30	gb\|AC007726.7\|AC007726 Drosophila melanogaster, chromosome 3R, r...	44	0.43
31	emb\|BX936416.11\| Zebrafish DNA sequence from clone CH211-194I16 ...	44	0.43
32	gb\|AE003711.3\| Drosophila melanogaster chromosome 3R, section 49...	44	0.43
33	gb\|BT001428.1\| Drosophila melanogaster GH16009 full insert cDNA	44	0.43
34	gb\|CP000031.1\| Silicibacter pomeroyi DSS-3, complete genome	42	1.7
35	emb\|AL663099.7\| Mouse DNA sequence from clone DN-384L23 on chrom...	42	1.7
36	dbj\|AP007154.1\| Aspergillus oryzae RIB40 genomic DNA, SC001	42	1.7
37	gb\|AF458410.1\|AF458410 Brassica oleracea auxin-repressed protein...	42	1.7
38	gb\|AF315553.1\|AF315553 Homo sapiens PRKY gene, partial sequence,...	42	1.7
39	gb\|CP000116.1\| Thiobacillus denitrificans ATCC 25259, complete g...	42	1.7
40	gb\|AC010104.3\|AC010104 Homo sapiens BAC clone RP11-540C18 from Y...	42	1.7
41	dbj\|AP006618.1\| Nocardia farcinica IFM 10152 DNA, complete genome	42	1.7
42	emb\|AL606750.13\| Mouse DNA sequence from clone RP23-335A19 on ch...	42	1.7
43	gb\|AC132262.2\| Mus musculus chromosome 5 clone RP24-370J24, comp...	40	6.7
44	gb\|AC149224.7\| Mus musculus BAC clone RP23-81D11 from chromosome...	40	6.7
45	gb\|AC010124.6\| Drosophila melanogaster clone BACR06O03, complete...	40	6.7
46	emb\|CR751601.8\| Zebrafish DNA sequence from clone CH211-162E3 in...	40	6.7
47	gb\|AC140411.3\| Mus musculus BAC clone RP24-93J6 from chromosome ...	40	6.7
48	gb\|AC134453.4\| Mus musculus BAC clone RP24-263P23 from chromosom...	40	6.7
49	gb\|AC104101.5\| Mus musculus BAC clone RP24-377D2 from chromosome...	40	6.7
50	emb\|AL031676.3\|HS753D4 Human DNA sequence from clone RP4-753D4 o...	40	6.7
51	emb\|AL669951.18\| Mouse DNA sequence from clone RP23-94F11 on chr...	40	6.7
52	emb\|BX649501.24\| Zebrafish DNA sequence from clone DKEY-123F20 i...	40	6.7
53	gb\|AE005702.1\| Caulobacter crescentus CB15 section 28 of 359 of ...	40	6.7
54	gb\|AC104166.2\| Homo sapiens chromosome 3 clone RP11-199N21, comp...	40	6.7
55	gb\|DQ396892.1\| Eulemur rubriventer clone 44HDZ119 microsatellite...	40	6.7
56	gb\|AC096922.2\| Homo sapiens chromosome 3 clone RP11-436J20, comp...	40	6.7
57	emb\|BX511085.16\| Zebrafish DNA sequence from clone DKEY-273I10 i...	40	6.7
58	emb\|BX571981.5\| Zebrafish DNA sequence from clone DKEY-31J3 in l...	40	6.7
59	ref\|NM_058322.2\| Caenorhabditis elegans R119.1 (R119.1) mRNA, co...	40	6.7
60	gb\|AC142417.2\| Homo sapiens fosmid clone XXFOS-87237G7 from 2, c...	40	6.7
61	gb\|AF063007.3\| Caenorhabditis elegans cosmid R119, complete sequ...	40	6.7
62	emb\|CT485668.1\| Leptosphaeria maculans : genomic region surround...	40	6.7
63	gb\|AE003685.5\| Drosophila melanogaster chromosome 3R, section 23...	40	6.7
64	gb\|CP000086.1\| Burkholderia thailandensis E264 chromosome I, com...	40	6.7
65	gb\|AC158363.2\| Mus musculus BAC clone RP23-214J3 from chromosome...	40	6.7

>dbj|AK119708.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-E08, full
           insert sequence
          Length = 782

 Score =  214 bits (108), Expect = 2e-52
 Identities = 135/144 (93%)
 Strand = Plus / Minus

                                                                       
Query: 327 tcctggtctcgtcgctgtaaagccagtcgtagacggtgggggagttgggctgggggcggt 386
           ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 442 tcctggtctcgtcgctgtacagccagtcgtagacggtgggggagttgggctgcgggcggt 383

                                                                       
Query: 387 cgaagaggttggcgccgaggcccttggtggcgaggttgctcccggggtggaagacgctcc 446
           ||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||
Sbjct: 382 cgaagaggttggcgccgaggctcttggtggcgaggttgctccccgggtggaacacgctcc 323

                                   
Query: 447 gccacacgctgccgccgcgcggcg 470
            ||||||| ||| ||| |||||||
Sbjct: 322 tccacacgttgctgccccgcggcg 299

to top

>dbj|AK060981.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-H08, full
           insert sequence
          Length = 801

 Score =  214 bits (108), Expect = 2e-52
 Identities = 135/144 (93%)
 Strand = Plus / Minus

                                                                       
Query: 327 tcctggtctcgtcgctgtaaagccagtcgtagacggtgggggagttgggctgggggcggt 386
           ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 442 tcctggtctcgtcgctgtacagccagtcgtagacggtgggggagttgggctgcgggcggt 383

                                                                       
Query: 387 cgaagaggttggcgccgaggcccttggtggcgaggttgctcccggggtggaagacgctcc 446
           ||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||
Sbjct: 382 cgaagaggttggcgccgaggctcttggtggcgaggttgctccccgggtggaacacgctcc 323

                                   
Query: 447 gccacacgctgccgccgcgcggcg 470
            ||||||| ||| ||| |||||||
Sbjct: 322 tccacacgttgctgccccgcggcg 299

to top

>gb|AY103814.1| Zea mays PCO099562 mRNA sequence
          Length = 1044

 Score =  194 bits (98), Expect = 2e-46
 Identities = 125/134 (93%)
 Strand = Plus / Minus

                                                                       
Query: 327 tcctggtctcgtcgctgtaaagccagtcgtagacggtgggggagttgggctgggggcggt 386
           ||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct: 608 tcctggtctcgtcgctgtagagccagtcgtagacggtgggggagttgggctgcggccggt 549

                                                                       
Query: 387 cgaagaggttggcgccgaggcccttggtggcgaggttgctcccggggtggaagacgctcc 446
           |||||||||||||||| | |||||||||||| ||||||||||| |||||||||||||| |
Sbjct: 548 cgaagaggttggcgcccatgcccttggtggccaggttgctccccgggtggaagacgctgc 489

                         
Query: 447 gccacacgctgccg 460
           |||||||| |||||
Sbjct: 488 gccacacgttgccg 475

to top

>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0076M06, complete sequence
          Length = 133581

 Score =  178 bits (90), Expect = 1e-41
 Identities = 114/122 (93%)
 Strand = Plus / Plus

                                                                         
Query: 349   ccagtcgtagacggtgggggagttgggctgggggcggtcgaagaggttggcgccgaggcc 408
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 54989 ccagtcgtagacggtgggggagttgggctgcgggcggtcgaagaggttggcgccgaggct 55048

                                                                         
Query: 409   cttggtggcgaggttgctcccggggtggaagacgctccgccacacgctgccgccgcgcgg 468
             ||||||||||||||||||||| |||||||| ||||||| ||||||| ||| ||| |||||
Sbjct: 55049 cttggtggcgaggttgctccccgggtggaacacgctcctccacacgttgctgccccgcgg 55108

               
Query: 469   cg 470
             ||
Sbjct: 55109 cg 55110



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 327   tcctggtctcgtcgctgtaaagcc 350
             ||||||||||||||||||| ||||
Sbjct: 54706 tcctggtctcgtcgctgtacagcc 54729

to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  178 bits (90), Expect = 1e-41
 Identities = 114/122 (93%)
 Strand = Plus / Plus

                                                                            
Query: 349      ccagtcgtagacggtgggggagttgggctgggggcggtcgaagaggttggcgccgaggcc 408
                |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 26253340 ccagtcgtagacggtgggggagttgggctgcgggcggtcgaagaggttggcgccgaggct 26253399

                                                                            
Query: 409      cttggtggcgaggttgctcccggggtggaagacgctccgccacacgctgccgccgcgcgg 468
                ||||||||||||||||||||| |||||||| ||||||| ||||||| ||| ||| |||||
Sbjct: 26253400 cttggtggcgaggttgctccccgggtggaacacgctcctccacacgttgctgccccgcgg 26253459

                  
Query: 469      cg 470
                ||
Sbjct: 26253460 cg 26253461



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 327      tcctggtctcgtcgctgtaaagcc 350
                ||||||||||||||||||| ||||
Sbjct: 26253057 tcctggtctcgtcgctgtacagcc 26253080

to top

>dbj|AK111295.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-A09, full
           insert sequence
          Length = 859

 Score =  178 bits (90), Expect = 1e-41
 Identities = 114/122 (93%)
 Strand = Plus / Plus

                                                                       
Query: 349 ccagtcgtagacggtgggggagttgggctgggggcggtcgaagaggttggcgccgaggcc 408
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 368 ccagtcgtagacggtgggggagttgggctgcgggcggtcgaagaggttggcgccgaggct 427

                                                                       
Query: 409 cttggtggcgaggttgctcccggggtggaagacgctccgccacacgctgccgccgcgcgg 468
           ||||||||||||||||||||| |||||||| ||||||| ||||||| ||| ||| |||||
Sbjct: 428 cttggtggcgaggttgctccccgggtggaacacgctcctccacacgttgctgccccgcgg 487

             
Query: 469 cg 470
           ||
Sbjct: 488 cg 489



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 327 tcctggtctcgtcgctgtaaagcc 350
           ||||||||||||||||||| ||||
Sbjct: 85  tcctggtctcgtcgctgtacagcc 108

to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  178 bits (90), Expect = 1e-41
 Identities = 114/122 (93%)
 Strand = Plus / Plus

                                                                            
Query: 349      ccagtcgtagacggtgggggagttgggctgggggcggtcgaagaggttggcgccgaggcc 408
                |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 26567598 ccagtcgtagacggtgggggagttgggctgcgggcggtcgaagaggttggcgccgaggct 26567657

                                                                            
Query: 409      cttggtggcgaggttgctcccggggtggaagacgctccgccacacgctgccgccgcgcgg 468
                ||||||||||||||||||||| |||||||| ||||||| ||||||| ||| ||| |||||
Sbjct: 26567658 cttggtggcgaggttgctccccgggtggaacacgctcctccacacgttgctgccccgcgg 26567717

                  
Query: 469      cg 470
                ||
Sbjct: 26567718 cg 26567719



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 327      tcctggtctcgtcgctgtaaagcc 350
                ||||||||||||||||||| ||||
Sbjct: 26567315 tcctggtctcgtcgctgtacagcc 26567338

to top

>gb|AF467730.1| Oryza sativa putative dormancy-asociated protein mRNA, complete cds
          Length = 787

 Score =  174 bits (88), Expect = 2e-40
 Identities = 131/144 (90%), Gaps = 1/144 (0%)
 Strand = Plus / Minus

                                                                       
Query: 327 tcctggtctcgtcgctgtaaagccagtcgtagacggtgggggagttgggctgggggcggt 386
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 371 tcctggtctcgtcgctgtacagccagtcgtagaccgtgggggagttgggctgggggcggt 312

                                                                       
Query: 387 cgaagaggttggcgccgaggcccttggtggcgaggttgctcccggggtggaagacgctcc 446
           |||| ||||||||||||| || |||||| |||| ||||||||| |||||||| |||||||
Sbjct: 311 cgaaaaggttggcgccgaagctcttggt-gcgaagttgctccccgggtggaacacgctcc 253

                                   
Query: 447 gccacacgctgccgccgcgcggcg 470
            ||||||| ||| ||| |||||||
Sbjct: 252 tccacacgttgctgccccgcggcg 229

to top

>gb|AC169374.2| Sorghum bicolor clone SB_BBc0019I06, complete sequence
          Length = 129695

 Score =  139 bits (70), Expect = 1e-29
 Identities = 97/106 (91%)
 Strand = Plus / Minus

                                                                         
Query: 349   ccagtcgtagacggtgggggagttgggctgggggcggtcgaagaggttggcgccgaggcc 408
             |||||||||||||||||||||||| ||||| |||||||||||||||||||| || | |||
Sbjct: 13127 ccagtcgtagacggtgggggagtttggctgcgggcggtcgaagaggttggcacccatgcc 13068

                                                           
Query: 409   cttggtggcgaggttgctcccggggtggaagacgctccgccacacg 454
             ||||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct: 13067 cttggtggccaggttgctccccgggtggaacacgctgcgccacacg 13022



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 327   tcctggtctcgtcgctgtaaagcc 350
             ||||||||||||||||||| ||||
Sbjct: 13940 tcctggtctcgtcgctgtagagcc 13917

to top

>gb|AY973621.1| Manihot esculenta auxin-repressed protein-like protein ARP2 mRNA,
           partial cds
          Length = 608

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 89/106 (83%)
 Strand = Plus / Minus

                                                                       
Query: 341 ctgtaaagccagtcgtagacggtgggggagttgggctgggggcggtcgaagaggttggcg 400
           |||||||||||||| ||||| ||||||||||| ||||| ||   ||||||||| |  || 
Sbjct: 179 ctgtaaagccagtcatagacagtgggggagttaggctgtggcttgtcgaagagctgagca 120

                                                         
Query: 401 ccgaggcccttggtggcgaggttgctcccggggtggaagacgctcc 446
           ||||| ||||| ||||| |||||||| || |||||||| |||||||
Sbjct: 119 ccgagacccttagtggcaaggttgctaccagggtggaaaacgctcc 74

to top

>gb|AY973620.1| Manihot esculenta auxin-repressed protein-like protein ARP1 mRNA,
           complete cds
          Length = 743

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 89/106 (83%)
 Strand = Plus / Minus

                                                                       
Query: 341 ctgtaaagccagtcgtagacggtgggggagttgggctgggggcggtcgaagaggttggcg 400
           |||||||||||||| ||||| ||||||||||| ||||| ||   ||||||||| |  || 
Sbjct: 351 ctgtaaagccagtcatagacagtgggggagttaggctgtggcttgtcgaagagctgagca 292

                                                         
Query: 401 ccgaggcccttggtggcgaggttgctcccggggtggaagacgctcc 446
           ||||| ||||| ||||| |||||||| || |||||||| |||||||
Sbjct: 291 ccgagacccttagtggcaaggttgctaccagggtggaaaacgctcc 246

to top

>gb|L15194.1| Malus x domestica unknown mRNA
          Length = 705

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 327 tcctggtctcgtcgctgtaaagccagtcgtagacggtgggggagttgggctg 378
           ||||||||||  | ||||| |||||||||||||| ||||| |||||||||||
Sbjct: 376 tcctggtctccccactgtagagccagtcgtagacagtgggagagttgggctg 325

to top

>gb|AF336307.1|AF336307 Malus x domestica auxin-repressed protein like-protein mRNA,
           complete cds
          Length = 734

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 327 tcctggtctcgtcgctgtaaagccagtcgtagacggtgggggagttgggctg 378
           ||||||||||  | ||||| |||||||||||||| ||||| |||||||||||
Sbjct: 372 tcctggtctccccactgtagagccagtcgtagacagtgggagagttgggctg 321

to top

>ref|NM_128942.2| Arabidopsis thaliana unknown protein AT2G33830 transcript variant
           AT2G33830.1 mRNA, complete cds
          Length = 618

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 335 tcgtcgctgtaaagccagtcgtagacggtgggggagtt 372
           ||||||||||| ||||| |||||||||||||| |||||
Sbjct: 352 tcgtcgctgtatagccaatcgtagacggtgggagagtt 315

to top

>ref|NM_179889.1| Arabidopsis thaliana unknown protein AT2G33830 transcript variant
           AT2G33830.2 mRNA, complete cds
          Length = 626

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 335 tcgtcgctgtaaagccagtcgtagacggtgggggagtt 372
           ||||||||||| ||||| |||||||||||||| |||||
Sbjct: 360 tcgtcgctgtatagccaatcgtagacggtgggagagtt 323

to top

>gb|AF361846.1| Arabidopsis thaliana At2g33830/T1B8.13 mRNA, complete cds
          Length = 621

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 335 tcgtcgctgtaaagccagtcgtagacggtgggggagtt 372
           ||||||||||| ||||| |||||||||||||| |||||
Sbjct: 358 tcgtcgctgtatagccaatcgtagacggtgggagagtt 321

to top

>gb|AY066049.1| Arabidopsis thaliana At2g33830/T1B8.13 mRNA, complete cds
          Length = 327

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 335 tcgtcgctgtaaagccagtcgtagacggtgggggagtt 372
           ||||||||||| ||||| |||||||||||||| |||||
Sbjct: 305 tcgtcgctgtatagccaatcgtagacggtgggagagtt 268

to top

>gb|AY085689.1| Arabidopsis thaliana clone 1711 mRNA, complete sequence
          Length = 597

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 335 tcgtcgctgtaaagccagtcgtagacggtgggggagtt 372
           ||||||||||| ||||| |||||||||||||| |||||
Sbjct: 353 tcgtcgctgtatagccaatcgtagacggtgggagagtt 316

to top

>dbj|AB050786.1| Arabidopsis thaliana mRNA for Dormancy-associated protein homolog,
           complete cds
          Length = 621

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 335 tcgtcgctgtaaagccagtcgtagacggtgggggagtt 372
           ||||||||||| ||||| |||||||||||||| |||||
Sbjct: 358 tcgtcgctgtatagccaatcgtagacggtgggagagtt 321

to top

>gb|AY185352.1| Brassica rapa subsp. pekinensis auxin-repressed protein mRNA,
           partial cds
          Length = 570

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 335 tcgtcgctgtaaagccagtcgtagacggtggg 366
           ||||||||||| | ||||||||||||||||||
Sbjct: 301 tcgtcgctgtacaaccagtcgtagacggtggg 270

to top

>emb|AJ867392.1| Triticum aestivum mRNA for glycosyltransferase (a1 gene)
          Length = 2384

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 397 ggcgccgaggcccttggtggcg 418
           ||||||||||||||||||||||
Sbjct: 75  ggcgccgaggcccttggtggcg 54

to top

>emb|CR396593.6| Zebrafish DNA sequence from clone CH211-194G1 in linkage group 5,
             complete sequence
          Length = 197143

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 18    aaacattgagaagaccacacca 39
             ||||||||||||||||||||||
Sbjct: 48464 aaacattgagaagaccacacca 48485

to top

>ref|NM_170650.2| Drosophila melanogaster Myosin heavy chain-like CG31045-RC,
            transcript variant C (Mhcl), mRNA
          Length = 2928

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 338  tcgctgtaaagccagtcgtaga 359
            ||||||||||||||||||||||
Sbjct: 2505 tcgctgtaaagccagtcgtaga 2484

to top

>ref|NM_169703.1| Drosophila melanogaster Myosin heavy chain-like CG31045-RD,
            transcript variant D (Mhcl), mRNA
          Length = 4004

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 338  tcgctgtaaagccagtcgtaga 359
            ||||||||||||||||||||||
Sbjct: 3682 tcgctgtaaagccagtcgtaga 3661

to top

>ref|NM_169701.1| Drosophila melanogaster Myosin heavy chain-like CG31045-RB,
            transcript variant B (Mhcl), mRNA
          Length = 6384

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 338  tcgctgtaaagccagtcgtaga 359
            ||||||||||||||||||||||
Sbjct: 6062 tcgctgtaaagccagtcgtaga 6041

to top

>ref|NM_169700.1| Drosophila melanogaster Myosin heavy chain-like CG31045-RA,
            transcript variant A (Mhcl), mRNA
          Length = 6201

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 338  tcgctgtaaagccagtcgtaga 359
            ||||||||||||||||||||||
Sbjct: 5879 tcgctgtaaagccagtcgtaga 5858

to top

>ref|NM_169699.1| Drosophila melanogaster Myosin heavy chain-like CG31045-RE,
            transcript variant E (Mhcl), mRNA
          Length = 6706

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 338  tcgctgtaaagccagtcgtaga 359
            ||||||||||||||||||||||
Sbjct: 6384 tcgctgtaaagccagtcgtaga 6363

to top

>gb|AY069747.1| Drosophila melanogaster LP08646 full length cDNA
          Length = 4254

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 338  tcgctgtaaagccagtcgtaga 359
            ||||||||||||||||||||||
Sbjct: 3682 tcgctgtaaagccagtcgtaga 3661

to top

>gb|AY051503.1| Drosophila melanogaster GH15471 full length cDNA
          Length = 6223

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 338  tcgctgtaaagccagtcgtaga 359
            ||||||||||||||||||||||
Sbjct: 5879 tcgctgtaaagccagtcgtaga 5858

to top

>gb|AC007726.7|AC007726 Drosophila melanogaster, chromosome 3R, region 89B-89B, BAC clone
             BACR05C20, complete sequence
          Length = 177278

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 338   tcgctgtaaagccagtcgtaga 359
             ||||||||||||||||||||||
Sbjct: 99088 tcgctgtaaagccagtcgtaga 99109

to top

>emb|BX936416.11| Zebrafish DNA sequence from clone CH211-194I16 in linkage group 18,
              complete sequence
          Length = 214763

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 70     cacacaaagtacacacatacac 91
              ||||||||||||||||||||||
Sbjct: 145187 cacacaaagtacacacatacac 145166

to top

>gb|AE003711.3| Drosophila melanogaster chromosome 3R, section 49 of 118 of the complete
              sequence
          Length = 236475

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 338    tcgctgtaaagccagtcgtaga 359
              ||||||||||||||||||||||
Sbjct: 190562 tcgctgtaaagccagtcgtaga 190583

to top

>gb|BT001428.1| Drosophila melanogaster GH16009 full insert cDNA
          Length = 2942

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 338  tcgctgtaaagccagtcgtaga 359
            ||||||||||||||||||||||
Sbjct: 2505 tcgctgtaaagccagtcgtaga 2484

to top

>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 454     gctgccgccgcgcggcggcgt 474
               |||||||||||||||||||||
Sbjct: 1884703 gctgccgccgcgcggcggcgt 1884683

to top

>emb|AL663099.7| Mouse DNA sequence from clone DN-384L23 on chromosome 3 Contains a
             glyceraldehyde-3-phosphate dehydrogenase (GAPD)
             pseudogene, two novel genes (4930406D18RIK)
             (4930431B09Rik), the 5' end of a novel gene
             (E130019M14RIK) and a CpG island, complete sequence
          Length = 177135

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 76    aagtacacacatacacccatcactc 100
             ||||||||||||||||||| |||||
Sbjct: 78133 aagtacacacatacacccaacactc 78157

to top

>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001
          Length = 2005935

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 243    agcagcaaacatggcgtcgtc 263
              |||||||||||||||||||||
Sbjct: 901517 agcagcaaacatggcgtcgtc 901497

to top

>gb|AF458410.1|AF458410 Brassica oleracea auxin-repressed protein (ARP1) mRNA, complete cds
          Length = 605

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 335 tcgtcgctgtaaagccagtcgtagacggt 363
           ||||||||||| |||||||| ||||||||
Sbjct: 331 tcgtcgctgtacagccagtcatagacggt 303

to top

>gb|AF315553.1|AF315553 Homo sapiens PRKY gene, partial sequence, in clone Y813, complete
              sequence
          Length = 197321

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 19     aacattgagaagaccacacca 39
              |||||||||||||||||||||
Sbjct: 133431 aacattgagaagaccacacca 133451

to top

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 391     gaggttggcgccgaggcccttggtggcga 419
               ||||||||||||||||||  |||||||||
Sbjct: 2139433 gaggttggcgccgaggccgatggtggcga 2139405

to top

>gb|AC010104.3|AC010104 Homo sapiens BAC clone RP11-540C18 from Y, complete sequence
          Length = 110250

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 19    aacattgagaagaccacacca 39
             |||||||||||||||||||||
Sbjct: 57096 aacattgagaagaccacacca 57076

to top

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 393     ggttggcgccgaggcccttgg 413
               |||||||||||||||||||||
Sbjct: 1267212 ggttggcgccgaggcccttgg 1267192

to top

>emb|AL606750.13| Mouse DNA sequence from clone RP23-335A19 on chromosome 3, complete
              sequence
          Length = 207366

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 76     aagtacacacatacacccatcactc 100
              ||||||||||||||||||| |||||
Sbjct: 135759 aagtacacacatacacccaacactc 135783

to top

>gb|AC132262.2| Mus musculus chromosome 5 clone RP24-370J24, complete sequence
          Length = 176466

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 313    gtggttgctcctggtcctgg 332
              ||||||||||||||||||||
Sbjct: 116683 gtggttgctcctggtcctgg 116702

to top

>gb|AC149224.7| Mus musculus BAC clone RP23-81D11 from chromosome 19, complete sequence
          Length = 217821

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     gcacacaaagtacacacata 88
              ||||||||||||||||||||
Sbjct: 114417 gcacacaaagtacacacata 114398

to top

>gb|AC010124.6| Drosophila melanogaster clone BACR06O03, complete sequence
          Length = 193483

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   gtgggggagttgggctgggg 381
             ||||||||||||||||||||
Sbjct: 58835 gtgggggagttgggctgggg 58854

to top

>emb|CR751601.8| Zebrafish DNA sequence from clone CH211-162E3 in linkage group 14,
              complete sequence
          Length = 141943

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 371    ttgggctgggggcggtcgaa 390
              ||||||||||||||||||||
Sbjct: 113159 ttgggctgggggcggtcgaa 113140

to top

>gb|AC140411.3| Mus musculus BAC clone RP24-93J6 from chromosome 19, complete sequence
          Length = 163978

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    cacaaagtacacacatacac 91
             ||||||||||||||||||||
Sbjct: 33495 cacaaagtacacacatacac 33514

to top

>gb|AC134453.4| Mus musculus BAC clone RP24-263P23 from chromosome 15, complete
             sequence
          Length = 131905

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 68    cgcacacaaagtacacacatacac 91
             ||||||||||| ||||||||||||
Sbjct: 77570 cgcacacaaaggacacacatacac 77593

to top

>gb|AC104101.5| Mus musculus BAC clone RP24-377D2 from chromosome 5, complete sequence
          Length = 185414

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   gtggttgctcctggtcctgg 332
             ||||||||||||||||||||
Sbjct: 72092 gtggttgctcctggtcctgg 72073

to top

>emb|AL031676.3|HS753D4 Human DNA sequence from clone RP4-753D4 on chromosome 20q12 Contains
             part of the PTPRT gene for protein tyrosine phosphatase
             receptor type T and a novel gene, complete sequence
          Length = 126635

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   aaactgaggtaacaaaagaa 144
             ||||||||||||||||||||
Sbjct: 76053 aaactgaggtaacaaaagaa 76034

to top

>emb|AL669951.18| Mouse DNA sequence from clone RP23-94F11 on chromosome 11 Contains three
              novel genes, a ribosomal protein L9 (Rpl9) pseudogene, a
              transcription elongation factor A (SII) 3 (Tcea3)
              pseudogene and the 3' end of the Fbxw1b gene for F-box and
              WD-40 domain protein 1B, complete sequence
          Length = 251085

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     cacacaaagtacacacatac 89
              ||||||||||||||||||||
Sbjct: 118428 cacacaaagtacacacatac 118447

to top

>emb|BX649501.24| Zebrafish DNA sequence from clone DKEY-123F20 in linkage group 5,
             complete sequence
          Length = 194220

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    attgagaagaccacaccacc 41
             ||||||||||||||||||||
Sbjct: 76209 attgagaagaccacaccacc 76228

to top

>gb|AE005702.1| Caulobacter crescentus CB15 section 28 of 359 of the complete genome
          Length = 5094

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 454  gctgccgccgcgcggcggcg 473
            ||||||||||||||||||||
Sbjct: 4488 gctgccgccgcgcggcggcg 4507

to top

>gb|AC104166.2| Homo sapiens chromosome 3 clone RP11-199N21, complete sequence
          Length = 171705

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 365   ggggagttgggctgggggcggtcgaaga 392
             |||||||| ||||||||||||| |||||
Sbjct: 32167 ggggagtttggctgggggcggttgaaga 32194

to top

>gb|DQ396892.1| Eulemur rubriventer clone 44HDZ119 microsatellite sequence
          Length = 158

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 76 aagtacacacatacacccat 95
          ||||||||||||||||||||
Sbjct: 61 aagtacacacatacacccat 80

to top

>gb|AC096922.2| Homo sapiens chromosome 3 clone RP11-436J20, complete sequence
          Length = 218652

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 365  ggggagttgggctgggggcggtcgaaga 392
            |||||||| ||||||||||||| |||||
Sbjct: 1128 ggggagtttggctgggggcggttgaaga 1101

to top

>emb|BX511085.16| Zebrafish DNA sequence from clone DKEY-273I10 in linkage group 22,
             complete sequence
          Length = 117103

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    attgagaagaccacaccacc 41
             ||||||||||||||||||||
Sbjct: 62342 attgagaagaccacaccacc 62361

to top

>emb|BX571981.5| Zebrafish DNA sequence from clone DKEY-31J3 in linkage group 14, complete
              sequence
          Length = 258091

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 371    ttgggctgggggcggtcgaa 390
              ||||||||||||||||||||
Sbjct: 153411 ttgggctgggggcggtcgaa 153430

to top

>ref|NM_058322.2| Caenorhabditis elegans R119.1 (R119.1) mRNA, complete cds
          Length = 2197

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 383 cggtcgaagaggttggcgcc 402
           ||||||||||||||||||||
Sbjct: 740 cggtcgaagaggttggcgcc 759

to top

>gb|AC142417.2| Homo sapiens fosmid clone XXFOS-87237G7 from 2, complete sequence
          Length = 19840

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 71    acacaaagtacacacatacacccatcac 98
             ||||| ||||||||||||||| ||||||
Sbjct: 19605 acacacagtacacacatacacacatcac 19578

to top

>gb|AF063007.3| Caenorhabditis elegans cosmid R119, complete sequence
          Length = 38976

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 383  cggtcgaagaggttggcgcc 402
            ||||||||||||||||||||
Sbjct: 4365 cggtcgaagaggttggcgcc 4346

to top

>emb|CT485668.1| Leptosphaeria maculans : genomic region surrounding the avirulence gene
             AvrLm1 (AM084345)
          Length = 100390

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    acacacatacacccatcact 99
             ||||||||||||||||||||
Sbjct: 51554 acacacatacacccatcact 51535

to top

>gb|AE003685.5| Drosophila melanogaster chromosome 3R, section 23 of 118 of the
             complete sequence
          Length = 241476

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   gtgggggagttgggctgggg 381
             ||||||||||||||||||||
Sbjct: 56178 gtgggggagttgggctgggg 56159

to top

>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 451    cacgctgccgccgcgcggcggcgt 474
              ||||| ||||||||||||||||||
Sbjct: 371823 cacgccgccgccgcgcggcggcgt 371846

to top

>gb|AC158363.2| Mus musculus BAC clone RP23-214J3 from chromosome 15, complete
            sequence
          Length = 228138

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 68   cgcacacaaagtacacacatacac 91
            ||||||||||| ||||||||||||
Sbjct: 9112 cgcacacaaaggacacacatacac 9135


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,974,608
Number of Sequences: 3902068
Number of extensions: 3974608
Number of successful extensions: 82442
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81959
Number of HSP's gapped (non-prelim): 483
length of query: 492
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 470
effective length of database: 17,147,199,772
effective search space: 8059183892840
effective search space used: 8059183892840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result