ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23j19 |
|---|---|
| Clone Library Name | barley_pub |
>COPZ1_BOVIN (P35604) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 72.4 bits (176), Expect = 8e-13 Identities = 46/126 (36%), Positives = 65/126 (51%) Frame = -2 Query: 534 RSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRT 355 R+++EI LL+G VVYK DL+F+V ENEL++ VL DS+ +LR +VEKR Sbjct: 54 RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRA 113 Query: 354 AXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREHF 175 E+D + +VA D VP +EQT+SQ L +A+E Sbjct: 114 LLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGED--VPLTEQTVSQVLQSAKEQI 171 Query: 174 ARSLLK 157 SLL+ Sbjct: 172 KWSLLR 177
>COPZ1_PONPY (Q5R5F2) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 71.6 bits (174), Expect = 1e-12 Identities = 46/126 (36%), Positives = 65/126 (51%) Frame = -2 Query: 534 RSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRT 355 R+++EI LL+G VVYK DL+F+V ENEL++ VL DS+ +LR +VEKR Sbjct: 54 RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRA 113 Query: 354 AXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREHF 175 E+D + +VA D VP +EQT+SQ L +A+E Sbjct: 114 LLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGED--VPLTEQTVSQVLQSAKEQI 171 Query: 174 ARSLLK 157 SLL+ Sbjct: 172 KWSLLR 177
>COPZ1_MOUSE (P61924) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 71.6 bits (174), Expect = 1e-12 Identities = 46/126 (36%), Positives = 65/126 (51%) Frame = -2 Query: 534 RSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRT 355 R+++EI LL+G VVYK DL+F+V ENEL++ VL DS+ +LR +VEKR Sbjct: 54 RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRA 113 Query: 354 AXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREHF 175 E+D + +VA D VP +EQT+SQ L +A+E Sbjct: 114 LLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGED--VPLTEQTVSQVLQSAKEQI 171 Query: 174 ARSLLK 157 SLL+ Sbjct: 172 KWSLLR 177
>COPZ1_HUMAN (P61923) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 71.6 bits (174), Expect = 1e-12 Identities = 46/126 (36%), Positives = 65/126 (51%) Frame = -2 Query: 534 RSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRT 355 R+++EI LL+G VVYK DL+F+V ENEL++ VL DS+ +LR +VEKR Sbjct: 54 RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRA 113 Query: 354 AXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREHF 175 E+D + +VA D VP +EQT+SQ L +A+E Sbjct: 114 LLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGED--VPLTEQTVSQVLQSAKEQI 171 Query: 174 ARSLLK 157 SLL+ Sbjct: 172 KWSLLR 177
>COPZ_CAEEL (O17901) Probable coatomer subunit zeta (Zeta-coat protein)| (Zeta-COP) Length = 184 Score = 60.8 bits (146), Expect = 2e-09 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 4/134 (2%) Frame = -2 Query: 546 KTNARSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDV 367 KT+ + A+I LLDG +Y+ DL+F+V ENEL + L D+V ++LR +V Sbjct: 53 KTSRNTSADILLLDGVTCLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNV 112 Query: 366 EKRTAXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQA---- 199 EK+ ETDA + + A + + V FS+Q++SQ Sbjct: 113 EKKALIDSMDTIMLIIDEICDEGIIMETDAQAVVQRTALKSDE--VSFSDQSVSQIGFSF 170 Query: 198 LATAREHFARSLLK 157 + +A E F SLLK Sbjct: 171 MKSANEQFKWSLLK 184
>COPZ2_MOUSE (Q9JHH9) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 205 Score = 60.1 bits (144), Expect = 4e-09 Identities = 40/127 (31%), Positives = 61/127 (48%) Frame = -2 Query: 537 ARSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKR 358 +R+E+EI L G +VYK D+ +V ENEL++ +VL DS+ +LR +VEKR Sbjct: 81 SRTESEIAFLGGMTIVYKSSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKR 140 Query: 357 TAXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREH 178 E+D + KV D + +EQ+++Q L +A+E Sbjct: 141 WLLENMDGAFLVLDETVDGGVILESDPQQVIQKVNFRTDDSGL--TEQSVAQVLQSAKEQ 198 Query: 177 FARSLLK 157 SLLK Sbjct: 199 IKWSLLK 205
>COPZ2_HUMAN (Q9P299) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 210 Score = 59.7 bits (143), Expect = 5e-09 Identities = 41/127 (32%), Positives = 62/127 (48%) Frame = -2 Query: 537 ARSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKR 358 +R+E+EI G +VYK DL +V ENEL++ +VL +S+ +LR +VEKR Sbjct: 86 SRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKR 145 Query: 357 TAXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREH 178 E+D + KV A DG + +EQ+++Q L +A+E Sbjct: 146 WLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGGL--TEQSVAQVLQSAKEQ 203 Query: 177 FARSLLK 157 SLLK Sbjct: 204 IKWSLLK 210
>COPZ_SCHPO (O74891) Probable coatomer subunit zeta (Zeta-coat protein)| (Zeta-COP) Length = 190 Score = 42.4 bits (98), Expect = 9e-04 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 4/130 (3%) Frame = -2 Query: 534 RSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRT 355 +++ +I DG +VV V D+ F++ G +ENE+++ L+ D++ LL + +KRT Sbjct: 58 KTQNDILTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRT 117 Query: 354 AXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVATNAADGS----VPFSEQTISQALATA 187 ET+ IA +V + F E + A Sbjct: 118 LLENYDQLVIVVDETIDDGVILETEPALIAARVTKGPVSEAQAIVSDFKEMGFMNSFQKA 177 Query: 186 REHFARSLLK 157 RE +LK Sbjct: 178 REKITERILK 187
>COPZ_YEAST (P53600) Coatomer subunit zeta (Zeta-coat protein) (Zeta-COP)| Length = 189 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/94 (22%), Positives = 45/94 (47%) Frame = -2 Query: 534 RSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRT 355 + ++EI + + ++V+YK D+ ++ A +ENE+++ ++ L+L ++K+ Sbjct: 60 KQDSEILIFEDHLVLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLILNSGMDKKN 119 Query: 354 AXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVA 253 ETD+NTIA +V+ Sbjct: 120 IQENYDMVLLAIDETIDNGVILETDSNTIASRVS 153
>13S2_FAGES (O23880) 13S globulin seed storage protein 2 precursor| (Legumin-like protein 2) [Contains: 13S globulin seed storage protein 2 acidic chain; 13S globulin seed storage protein 2 basic chain] Length = 504 Score = 29.6 bits (65), Expect = 5.9 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 18/73 (24%) Frame = -2 Query: 519 ITLLDGNIVVYKFVQDLHFFVTAG------------------DDENELIIANVLQGFADS 394 +TLLD N + +++ F AG DD+ L+ AN+L GF D Sbjct: 191 VTLLDANSYHKQLDENVRSFFLAGQSQRETREEGSDRQSRESDDDEALLGANILSGFQDE 250 Query: 393 VGLLLRGDVEKRT 355 + L DV++ T Sbjct: 251 ILHELFRDVDRET 263
>LRP1_CHICK (P98157) Low-density lipoprotein receptor-related protein 1 precursor| (LRP) (Alpha-2-macroglobulin receptor) (A2MR) Length = 4543 Score = 29.3 bits (64), Expect = 7.7 Identities = 25/90 (27%), Positives = 40/90 (44%) Frame = +1 Query: 79 QAYSIVARPQTHTSCNRGDRRSSGFSLQKRSCKVFPGCGQSLGYCLLREGNRTVSSIGCN 258 +A I A+ T+ +C RG ++ K SC+ C LR G T S + N Sbjct: 3793 EAQCIQAQSSTYCTCRRGFQKVP----DKNSCQDVNEC--------LRFG--TCSQLCNN 3838 Query: 259 LPRNGIRICFKNYAAINNLINAEKYQVQVL 348 + + C KN+ +N+ AE + Q+L Sbjct: 3839 TKGSHVCSCAKNFMKTDNMCKAEGSEHQIL 3868
>CLPB2_CHLTE (Q8KA87) Probable chaperone clpB 2| Length = 442 Score = 29.3 bits (64), Expect = 7.7 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -2 Query: 522 EITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQ 409 E+ DG +++ F+ +LH V AG E + AN+L+ Sbjct: 268 EVQASDGEVIL--FIDELHLLVGAGSAEGSMDAANILK 303
>DBP5_USTMA (Q4P7Z8) ATP-dependent RNA helicase DBP5 (EC 3.6.1.-)| Length = 456 Score = 28.9 bits (63), Expect = 10.0 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = -2 Query: 201 ALATAREHFARSLLK*ETTASSVTPVTTCVCL 106 ALA +RE AR ++ T S T VTTC+CL Sbjct: 139 ALAPSRE-LARQIMDVARTMSKFTNVTTCLCL 169
>LAMA_DROME (Q00174) Laminin alpha chain precursor| Length = 3712 Score = 28.9 bits (63), Expect = 10.0 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 9/52 (17%) Frame = -1 Query: 283 RCEYH-CGEGCNQCC*RFCSLL*ADNI--------PSSGHSQGTLCKISSEV 155 RC++H CG CN+CC F N P + H CK EV Sbjct: 297 RCQHHTCGIQCNECCPGFEQKKWRQNTNARPFNCEPCNCHGHSNECKYDEEV 348 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,825,944 Number of Sequences: 219361 Number of extensions: 1339474 Number of successful extensions: 4017 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3880 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4012 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
