ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23j19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COPZ1_BOVIN (P35604) Coatomer subunit zeta-1 (Zeta-1 coat protei... 72 8e-13
2COPZ1_PONPY (Q5R5F2) Coatomer subunit zeta-1 (Zeta-1 coat protei... 72 1e-12
3COPZ1_MOUSE (P61924) Coatomer subunit zeta-1 (Zeta-1 coat protei... 72 1e-12
4COPZ1_HUMAN (P61923) Coatomer subunit zeta-1 (Zeta-1 coat protei... 72 1e-12
5COPZ_CAEEL (O17901) Probable coatomer subunit zeta (Zeta-coat pr... 61 2e-09
6COPZ2_MOUSE (Q9JHH9) Coatomer subunit zeta-2 (Zeta-2 coat protei... 60 4e-09
7COPZ2_HUMAN (Q9P299) Coatomer subunit zeta-2 (Zeta-2 coat protei... 60 5e-09
8COPZ_SCHPO (O74891) Probable coatomer subunit zeta (Zeta-coat pr... 42 9e-04
9COPZ_YEAST (P53600) Coatomer subunit zeta (Zeta-coat protein) (Z... 41 0.002
1013S2_FAGES (O23880) 13S globulin seed storage protein 2 precurso... 30 5.9
11LRP1_CHICK (P98157) Low-density lipoprotein receptor-related pro... 29 7.7
12CLPB2_CHLTE (Q8KA87) Probable chaperone clpB 2 29 7.7
13DBP5_USTMA (Q4P7Z8) ATP-dependent RNA helicase DBP5 (EC 3.6.1.-) 29 10.0
14LAMA_DROME (Q00174) Laminin alpha chain precursor 29 10.0

>COPZ1_BOVIN (P35604) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)|
          Length = 177

 Score = 72.4 bits (176), Expect = 8e-13
 Identities = 46/126 (36%), Positives = 65/126 (51%)
 Frame = -2

Query: 534 RSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRT 355
           R+++EI LL+G  VVYK   DL+F+V     ENEL++  VL    DS+  +LR +VEKR 
Sbjct: 54  RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRA 113

Query: 354 AXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREHF 175
                                 E+D   +  +VA    D  VP +EQT+SQ L +A+E  
Sbjct: 114 LLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGED--VPLTEQTVSQVLQSAKEQI 171

Query: 174 ARSLLK 157
             SLL+
Sbjct: 172 KWSLLR 177



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>COPZ1_PONPY (Q5R5F2) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)|
          Length = 177

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 46/126 (36%), Positives = 65/126 (51%)
 Frame = -2

Query: 534 RSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRT 355
           R+++EI LL+G  VVYK   DL+F+V     ENEL++  VL    DS+  +LR +VEKR 
Sbjct: 54  RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRA 113

Query: 354 AXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREHF 175
                                 E+D   +  +VA    D  VP +EQT+SQ L +A+E  
Sbjct: 114 LLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGED--VPLTEQTVSQVLQSAKEQI 171

Query: 174 ARSLLK 157
             SLL+
Sbjct: 172 KWSLLR 177



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>COPZ1_MOUSE (P61924) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)|
          Length = 177

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 46/126 (36%), Positives = 65/126 (51%)
 Frame = -2

Query: 534 RSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRT 355
           R+++EI LL+G  VVYK   DL+F+V     ENEL++  VL    DS+  +LR +VEKR 
Sbjct: 54  RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRA 113

Query: 354 AXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREHF 175
                                 E+D   +  +VA    D  VP +EQT+SQ L +A+E  
Sbjct: 114 LLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGED--VPLTEQTVSQVLQSAKEQI 171

Query: 174 ARSLLK 157
             SLL+
Sbjct: 172 KWSLLR 177



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>COPZ1_HUMAN (P61923) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)|
          Length = 177

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 46/126 (36%), Positives = 65/126 (51%)
 Frame = -2

Query: 534 RSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRT 355
           R+++EI LL+G  VVYK   DL+F+V     ENEL++  VL    DS+  +LR +VEKR 
Sbjct: 54  RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRA 113

Query: 354 AXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREHF 175
                                 E+D   +  +VA    D  VP +EQT+SQ L +A+E  
Sbjct: 114 LLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGED--VPLTEQTVSQVLQSAKEQI 171

Query: 174 ARSLLK 157
             SLL+
Sbjct: 172 KWSLLR 177



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>COPZ_CAEEL (O17901) Probable coatomer subunit zeta (Zeta-coat protein)|
           (Zeta-COP)
          Length = 184

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 4/134 (2%)
 Frame = -2

Query: 546 KTNARSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDV 367
           KT+  + A+I LLDG   +Y+   DL+F+V     ENEL +   L    D+V ++LR +V
Sbjct: 53  KTSRNTSADILLLDGVTCLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNV 112

Query: 366 EKRTAXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQA---- 199
           EK+                       ETDA  +  + A  + +  V FS+Q++SQ     
Sbjct: 113 EKKALIDSMDTIMLIIDEICDEGIIMETDAQAVVQRTALKSDE--VSFSDQSVSQIGFSF 170

Query: 198 LATAREHFARSLLK 157
           + +A E F  SLLK
Sbjct: 171 MKSANEQFKWSLLK 184



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>COPZ2_MOUSE (Q9JHH9) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)|
          Length = 205

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 40/127 (31%), Positives = 61/127 (48%)
 Frame = -2

Query: 537 ARSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKR 358
           +R+E+EI  L G  +VYK   D+  +V     ENEL++ +VL    DS+  +LR +VEKR
Sbjct: 81  SRTESEIAFLGGMTIVYKSSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKR 140

Query: 357 TAXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREH 178
                                  E+D   +  KV     D  +  +EQ+++Q L +A+E 
Sbjct: 141 WLLENMDGAFLVLDETVDGGVILESDPQQVIQKVNFRTDDSGL--TEQSVAQVLQSAKEQ 198

Query: 177 FARSLLK 157
              SLLK
Sbjct: 199 IKWSLLK 205



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>COPZ2_HUMAN (Q9P299) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)|
          Length = 210

 Score = 59.7 bits (143), Expect = 5e-09
 Identities = 41/127 (32%), Positives = 62/127 (48%)
 Frame = -2

Query: 537 ARSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKR 358
           +R+E+EI    G  +VYK   DL  +V     ENEL++ +VL    +S+  +LR +VEKR
Sbjct: 86  SRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKR 145

Query: 357 TAXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREH 178
                                  E+D   +  KV   A DG +  +EQ+++Q L +A+E 
Sbjct: 146 WLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGGL--TEQSVAQVLQSAKEQ 203

Query: 177 FARSLLK 157
              SLLK
Sbjct: 204 IKWSLLK 210



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>COPZ_SCHPO (O74891) Probable coatomer subunit zeta (Zeta-coat protein)|
           (Zeta-COP)
          Length = 190

 Score = 42.4 bits (98), Expect = 9e-04
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 4/130 (3%)
 Frame = -2

Query: 534 RSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRT 355
           +++ +I   DG +VV   V D+ F++  G +ENE+++   L+   D++ LL +   +KRT
Sbjct: 58  KTQNDILTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRT 117

Query: 354 AXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVATNAADGS----VPFSEQTISQALATA 187
                                 ET+   IA +V       +      F E     +   A
Sbjct: 118 LLENYDQLVIVVDETIDDGVILETEPALIAARVTKGPVSEAQAIVSDFKEMGFMNSFQKA 177

Query: 186 REHFARSLLK 157
           RE     +LK
Sbjct: 178 REKITERILK 187



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>COPZ_YEAST (P53600) Coatomer subunit zeta (Zeta-coat protein) (Zeta-COP)|
          Length = 189

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 21/94 (22%), Positives = 45/94 (47%)
 Frame = -2

Query: 534 RSEAEITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRT 355
           + ++EI + + ++V+YK   D+  ++ A  +ENE+++         ++ L+L   ++K+ 
Sbjct: 60  KQDSEILIFEDHLVLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLILNSGMDKKN 119

Query: 354 AXXXXXXXXXXXXXXXXXXXXXETDANTIAGKVA 253
                                 ETD+NTIA +V+
Sbjct: 120 IQENYDMVLLAIDETIDNGVILETDSNTIASRVS 153



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>13S2_FAGES (O23880) 13S globulin seed storage protein 2 precursor|
           (Legumin-like protein 2) [Contains: 13S globulin seed
           storage protein 2 acidic chain; 13S globulin seed
           storage protein 2 basic chain]
          Length = 504

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 18/73 (24%)
 Frame = -2

Query: 519 ITLLDGNIVVYKFVQDLHFFVTAG------------------DDENELIIANVLQGFADS 394
           +TLLD N    +  +++  F  AG                  DD+  L+ AN+L GF D 
Sbjct: 191 VTLLDANSYHKQLDENVRSFFLAGQSQRETREEGSDRQSRESDDDEALLGANILSGFQDE 250

Query: 393 VGLLLRGDVEKRT 355
           +   L  DV++ T
Sbjct: 251 ILHELFRDVDRET 263



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>LRP1_CHICK (P98157) Low-density lipoprotein receptor-related protein 1 precursor|
            (LRP) (Alpha-2-macroglobulin receptor) (A2MR)
          Length = 4543

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 25/90 (27%), Positives = 40/90 (44%)
 Frame = +1

Query: 79   QAYSIVARPQTHTSCNRGDRRSSGFSLQKRSCKVFPGCGQSLGYCLLREGNRTVSSIGCN 258
            +A  I A+  T+ +C RG ++       K SC+    C        LR G  T S +  N
Sbjct: 3793 EAQCIQAQSSTYCTCRRGFQKVP----DKNSCQDVNEC--------LRFG--TCSQLCNN 3838

Query: 259  LPRNGIRICFKNYAAINNLINAEKYQVQVL 348
               + +  C KN+   +N+  AE  + Q+L
Sbjct: 3839 TKGSHVCSCAKNFMKTDNMCKAEGSEHQIL 3868



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>CLPB2_CHLTE (Q8KA87) Probable chaperone clpB 2|
          Length = 442

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 522 EITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQ 409
           E+   DG +++  F+ +LH  V AG  E  +  AN+L+
Sbjct: 268 EVQASDGEVIL--FIDELHLLVGAGSAEGSMDAANILK 303



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>DBP5_USTMA (Q4P7Z8) ATP-dependent RNA helicase DBP5 (EC 3.6.1.-)|
          Length = 456

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -2

Query: 201 ALATAREHFARSLLK*ETTASSVTPVTTCVCL 106
           ALA +RE  AR ++    T S  T VTTC+CL
Sbjct: 139 ALAPSRE-LARQIMDVARTMSKFTNVTTCLCL 169



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>LAMA_DROME (Q00174) Laminin alpha chain precursor|
          Length = 3712

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
 Frame = -1

Query: 283 RCEYH-CGEGCNQCC*RFCSLL*ADNI--------PSSGHSQGTLCKISSEV 155
           RC++H CG  CN+CC  F       N         P + H     CK   EV
Sbjct: 297 RCQHHTCGIQCNECCPGFEQKKWRQNTNARPFNCEPCNCHGHSNECKYDEEV 348


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,825,944
Number of Sequences: 219361
Number of extensions: 1339474
Number of successful extensions: 4017
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4012
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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