ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23j18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF5_MAIZE (P55876) Eukaryotic translation initiation factor 5 (e... 29 3.6

>IF5_MAIZE (P55876) Eukaryotic translation initiation factor 5 (eIF-5)|
          Length = 451

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 61  LSKP*KKKGAKDNTSVKLRRQTTTA 135
           L K  KKKG+KD+T+  L+++ TTA
Sbjct: 180 LKKDAKKKGSKDSTAKGLKKKATTA 204


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,467,449
Number of Sequences: 219361
Number of extensions: 325233
Number of successful extensions: 789
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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