ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23j18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017937.1| Zea mays clone EL01N0520G04.c mRNA sequence 66 6e-08
2ref|NM_001030703.1| Gallus gallus phosphatidylserine receptor (P... 42 0.91
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.91
4gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genom... 42 0.91
5emb|AJ719379.1| Gallus gallus mRNA for hypothetical protein, clo... 42 0.91
6dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 42 0.91
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
8ref|NM_196426.1| Oryza sativa (japonica cultivar-group) hypothet... 40 3.6
9ref|NM_193802.1| Oryza sativa (japonica cultivar-group), predic... 40 3.6
10gb|AC137924.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.6
11ref|XM_870881.1| PREDICTED: Bos taurus similar to seven in absen... 40 3.6
12gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 3.6
13gb|AC023818.5| Homo sapiens chromosome 16 clone CTD-2600H12, com... 40 3.6
14gb|AC126469.7| Homo sapiens 3 BAC RP11-644C3 (Roswell Park Cance... 40 3.6
15gb|AC156398.13| Mus musculus 6 BAC RP24-279F16 (Roswell Park Can... 40 3.6
16emb|AL359973.11| Human DNA sequence from clone RP11-10B2 on chro... 40 3.6
17ref|XM_968169.1| PREDICTED: Tribolium castaneum similar to CG332... 40 3.6
18emb|BX569692.1| Synechococcus sp. WH8102 complete genome; segmen... 40 3.6
19emb|AJ400626.1|HSA400626 Homo sapiens SIAH1 gene, exons 1-2 40 3.6
20ref|NM_204746.1| Gallus gallus pre-B-cell leukemia transcription... 40 3.6
21dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
22gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nippo... 40 3.6
23gb|AY242058.1| Oryza sativa (japonica cultivar-group) MONOCULM 1... 40 3.6
24dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
25dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
26dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
27dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
28dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
29dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
30dbj|AP008247.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
31dbj|AP006530.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
32dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
33dbj|AP005903.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
34dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
35emb|BX119978.6| Mouse DNA sequence from clone RP23-354H3 on chro... 40 3.6
36dbj|AK102045.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.6
37dbj|AK101567.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.6
38dbj|AK065862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.6
39dbj|AK065200.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.6
40dbj|AK065034.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.6
41dbj|AK058524.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.6
42gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.6
43gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.6
44gb|AY885237.1| Homo sapiens sema domain, immunoglobulin domain (... 40 3.6
45gb|AC012435.13| Homo sapiens chromosome 15, clone RP11-10O17, co... 40 3.6
46dbj|AB043619.1| Gallus gallus PBX1A mRNA, complete cds 40 3.6
47dbj|AB072970.1| Homo sapiens Siah-1 gene, promoter region and ex... 40 3.6 
>gb|BT017937.1| Zea mays clone EL01N0520G04.c mRNA sequence
          Length = 893

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                        
Query: 233 ggtggtgcttcttgacgccgtctccccccttgccgccgccgccgc 277
           |||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct: 534 ggtggtgcttcttgccgccgtctccgcccttgccgccggcgccgc 490
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>ref|NM_001030703.1| Gallus gallus phosphatidylserine receptor (PTDSR), mRNA
          Length = 4919

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 257 cccccttgccgccgccgccgc 277
           |||||||||||||||||||||
Sbjct: 30  cccccttgccgccgccgccgc 10
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 257      cccccttgccgccgccgccgc 277
                |||||||||||||||||||||
Sbjct: 33332781 cccccttgccgccgccgccgc 33332801
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>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete
             sequence
          Length = 122815

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 257   cccccttgccgccgccgccgc 277
             |||||||||||||||||||||
Sbjct: 89297 cccccttgccgccgccgccgc 89317
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>emb|AJ719379.1| Gallus gallus mRNA for hypothetical protein, clone 1m8
          Length = 4919

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 257 cccccttgccgccgccgccgc 277
           |||||||||||||||||||||
Sbjct: 30  cccccttgccgccgccgccgc 10
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 257     cccccttgccgccgccgccgc 277
               |||||||||||||||||||||
Sbjct: 1950212 cccccttgccgccgccgccgc 1950232



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 242     tcttgacgccgtctcccccc 261
               ||||||||||||||||||||
Sbjct: 2184844 tcttgacgccgtctcccccc 2184863
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 257      cccccttgccgccgccgccgc 277
                |||||||||||||||||||||
Sbjct: 33423291 cccccttgccgccgccgccgc 33423311
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>ref|NM_196426.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNBa0060A14.16), mRNA
          Length = 1218

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 258  ccccttgccgccgccgccgc 277
            ||||||||||||||||||||
Sbjct: 1005 ccccttgccgccgccgccgc 986
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>ref|NM_193802.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 420

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 254 ctccccccttgccgccgccgccgc 277
           |||||||| |||||||||||||||
Sbjct: 153 ctccccccctgccgccgccgccgc 130
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>gb|AC137924.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0095K08,
              complete sequence
          Length = 180999

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    ccccttgccgccgccgccgc 277
              ||||||||||||||||||||
Sbjct: 146374 ccccttgccgccgccgccgc 146355
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>ref|XM_870881.1| PREDICTED: Bos taurus similar to seven in absentia homolog 1
           isoform b (LOC534655), mRNA
          Length = 2695

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 254 ctccccccttgccgccgccgccgc 277
           ||||||||| ||||||||||||||
Sbjct: 584 ctcccccctggccgccgccgccgc 561
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 258     ccccttgccgccgccgccgc 277
               ||||||||||||||||||||
Sbjct: 3621900 ccccttgccgccgccgccgc 3621881
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>gb|AC023818.5| Homo sapiens chromosome 16 clone CTD-2600H12, complete sequence
          Length = 173304

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 254   ctccccccttgccgccgccgccgc 277
             ||||||||| ||||||||||||||
Sbjct: 44180 ctcccccctggccgccgccgccgc 44157
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>gb|AC126469.7| Homo sapiens 3 BAC RP11-644C3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 110204

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    aacagtgacagtgagacatc 57
             ||||||||||||||||||||
Sbjct: 25436 aacagtgacagtgagacatc 25455
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>gb|AC156398.13| Mus musculus 6 BAC RP24-279F16 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 170925

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     acacaacagtgacagtgaga 53
              ||||||||||||||||||||
Sbjct: 134882 acacaacagtgacagtgaga 134863
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>emb|AL359973.11| Human DNA sequence from clone RP11-10B2 on chromosome Xq24-26.1
             Contains a prostaglandin-endoperoxide synthase 1
             (prostaglandin G/H synthase and cyclooxygenase) (PTGS1)
             pseudogene, the gene for a novel protein similar to part
             of NADH dehydrogenase 4L (MTND4L) and a pseudogene similar
             to part of NADH dehydrogenase 4 (MTND4), complete sequence
          Length = 109699

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    tacacacaacagtgacagtg 50
             ||||||||||||||||||||
Sbjct: 51890 tacacacaacagtgacagtg 51909
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>ref|XM_968169.1| PREDICTED: Tribolium castaneum similar to CG33257-PA (LOC662046),
           mRNA
          Length = 933

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 ccccttgccgccgccgccgc 277
           ||||||||||||||||||||
Sbjct: 795 ccccttgccgccgccgccgc 776
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>emb|BX569692.1| Synechococcus sp. WH8102 complete genome; segment 4/7
          Length = 345997

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   ggcggcaaacaacaacagca 135
             ||||||||||||||||||||
Sbjct: 10034 ggcggcaaacaacaacagca 10053
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>emb|AJ400626.1|HSA400626 Homo sapiens SIAH1 gene, exons 1-2
          Length = 31705

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 254  ctccccccttgccgccgccgccgc 277
            ||||||||| ||||||||||||||
Sbjct: 5383 ctcccccctggccgccgccgccgc 5360
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>ref|NM_204746.1| Gallus gallus pre-B-cell leukemia transcription factor 1 (PBX1), mRNA
          Length = 1818

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 256  ccccccttgccgccgccgcc 275
            ||||||||||||||||||||
Sbjct: 1650 ccccccttgccgccgccgcc 1669
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>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0560B06
          Length = 161720

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 254   ctccccccttgccgccgccgccgc 277
             |||||||| |||||||||||||||
Sbjct: 11173 ctccccccctgccgccgccgccgc 11150
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>gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0060A14, from chromosome 10, complete sequence
          Length = 151343

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    ccccttgccgccgccgccgc 277
              ||||||||||||||||||||
Sbjct: 106459 ccccttgccgccgccgccgc 106440



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 254   ctccccccttgccgccgccgccgc 277
             ||||||||| ||||||||||||||
Sbjct: 97060 ctcccccctcgccgccgccgccgc 97083
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>gb|AY242058.1| Oryza sativa (japonica cultivar-group) MONOCULM 1 (MOC1) gene,
            complete cds
          Length = 3176

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 254  ctccccccttgccgccgccgccgc 277
            ||||||||| ||||||||||||||
Sbjct: 1428 ctcccccctcgccgccgccgccgc 1451
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 258     ccccttgccgccgccgccgc 277
               ||||||||||||||||||||
Sbjct: 7851574 ccccttgccgccgccgccgc 7851593
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 258      ccccttgccgccgccgccgc 277
                ||||||||||||||||||||
Sbjct: 13414082 ccccttgccgccgccgccgc 13414063



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 254      ctccccccttgccgccgccgccgc 277
                ||||||||| ||||||||||||||
Sbjct: 13404683 ctcccccctcgccgccgccgccgc 13404706
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 254     ctccccccttgccgccgccgccgc 277
               ||||||||| ||||||||||||||
Sbjct: 4952752 ctcccccctcgccgccgccgccgc 4952775
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 258      ccccttgccgccgccgccgc 277
                ||||||||||||||||||||
Sbjct: 22180905 ccccttgccgccgccgccgc 22180886
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 254      ctccccccttgccgccgccgccgc 277
                ||||||||| ||||||||||||||
Sbjct: 23931298 ctcccccctcgccgccgccgccgc 23931321
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 254      ctccccccttgccgccgccgccgc 277
                |||||||| |||||||||||||||
Sbjct: 14995121 ctccccccctgccgccgccgccgc 14995098
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>dbj|AP008247.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0784G04
          Length = 157458

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 254   ctccccccttgccgccgccgccgc 277
             |||||||| |||||||||||||||
Sbjct: 34682 ctccccccctgccgccgccgccgc 34659
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>dbj|AP006530.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1329D01
          Length = 141938

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 254   ctccccccttgccgccgccgccgc 277
             |||||||| |||||||||||||||
Sbjct: 21368 ctccccccctgccgccgccgccgc 21345
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>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0490F09
          Length = 149542

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 254   ctccccccttgccgccgccgccgc 277
             ||||||||| ||||||||||||||
Sbjct: 60909 ctcccccctcgccgccgccgccgc 60932
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>dbj|AP005903.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1012G11
          Length = 167168

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 254    ctccccccttgccgccgccgccgc 277
              ||||||||| ||||||||||||||
Sbjct: 135284 ctcccccctcgccgccgccgccgc 135307
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>dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0058I18
          Length = 151453

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    ccccttgccgccgccgccgc 277
              ||||||||||||||||||||
Sbjct: 134561 ccccttgccgccgccgccgc 134542
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>emb|BX119978.6| Mouse DNA sequence from clone RP23-354H3 on chromosome X, complete
             sequence
          Length = 72115

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 120   gcaaacaacaacagcagngttcctaac 146
             |||| |||||||||||| |||||||||
Sbjct: 39410 gcaagcaacaacagcagagttcctaac 39384
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>dbj|AK102045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081M13, full
           insert sequence
          Length = 1682

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 ccccttgccgccgccgccgc 277
           ||||||||||||||||||||
Sbjct: 69  ccccttgccgccgccgccgc 88
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>dbj|AK101567.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050F16, full
           insert sequence
          Length = 3056

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 254 ctccccccttgccgccgccgccgc 277
           |||||||| |||||||||||||||
Sbjct: 135 ctccccccctgccgccgccgccgc 158
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>dbj|AK065862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044F03, full
           insert sequence
          Length = 3873

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 254 ctccccccttgccgccgccgccgc 277
           ||||||||| ||||||||||||||
Sbjct: 11  ctcccccctcgccgccgccgccgc 34
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>dbj|AK065200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E22, full
           insert sequence
          Length = 1341

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 254 ctccccccttgccgccgccgccgc 277
           ||||||||| ||||||||||||||
Sbjct: 29  ctcccccctcgccgccgccgccgc 52
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>dbj|AK065034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H04, full
           insert sequence
          Length = 1216

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 254 ctccccccttgccgccgccgccgc 277
           ||||||||| ||||||||||||||
Sbjct: 29  ctcccccctcgccgccgccgccgc 52
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>dbj|AK058524.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-H11, full
           insert sequence
          Length = 1522

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 ccccttgccgccgccgccgc 277
           ||||||||||||||||||||
Sbjct: 64  ccccttgccgccgccgccgc 83
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 258      ccccttgccgccgccgccgc 277
                ||||||||||||||||||||
Sbjct: 13421422 ccccttgccgccgccgccgc 13421403



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 254      ctccccccttgccgccgccgccgc 277
                ||||||||| ||||||||||||||
Sbjct: 13412023 ctcccccctcgccgccgccgccgc 13412046
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 258     ccccttgccgccgccgccgc 277
               ||||||||||||||||||||
Sbjct: 7921661 ccccttgccgccgccgccgc 7921680
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>gb|AY885237.1| Homo sapiens sema domain, immunoglobulin domain (Ig), and GPI
            membrane anchor, (semaphorin) 7A (SEMA7A) gene, complete
            cds
          Length = 27880

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 258  ccccttgccgccgccgccgc 277
            ||||||||||||||||||||
Sbjct: 2644 ccccttgccgccgccgccgc 2663
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>gb|AC012435.13| Homo sapiens chromosome 15, clone RP11-10O17, complete sequence
          Length = 132994

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   ccccttgccgccgccgccgc 277
             ||||||||||||||||||||
Sbjct: 26282 ccccttgccgccgccgccgc 26263
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>dbj|AB043619.1| Gallus gallus PBX1A mRNA, complete cds
          Length = 1818

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 256  ccccccttgccgccgccgcc 275
            ||||||||||||||||||||
Sbjct: 1650 ccccccttgccgccgccgcc 1669
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>dbj|AB072970.1| Homo sapiens Siah-1 gene, promoter region and exon 1
          Length = 3550

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 254  ctccccccttgccgccgccgccgc 277
            ||||||||| ||||||||||||||
Sbjct: 3363 ctcccccctggccgccgccgccgc 3340


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,108,285
Number of Sequences: 3902068
Number of extensions: 3108285
Number of successful extensions: 194518
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 190850
Number of HSP's gapped (non-prelim): 3668
length of query: 277
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 255
effective length of database: 17,147,199,772
effective search space: 4372535941860
effective search space used: 4372535941860
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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