ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23j15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate al... 248 8e-63
2gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome... 176 2e-41
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 176 2e-41
4dbj|AK104899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 2e-41
5dbj|AK073758.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 2e-41
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 176 2e-41
7gb|AY103557.1| Zea mays PCO070710 mRNA sequence 172 4e-40
8dbj|AK105927.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 9e-35
9gb|AF017362.1|AF017362 Oryza sativa aldolase mRNA, complete cds 153 4e-34
10dbj|D13513.1|RICCHLALD Oryza sativa gene for cytoplasmic aldolas... 153 4e-34
11dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 96 7e-17
12gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 96 7e-17
13emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007... 96 7e-17
14gb|AY106811.1| Zea mays PCO109530 mRNA sequence 60 4e-06
15ref|XM_482693.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.92
16ref|NM_196900.1| Oryza sativa (japonica cultivar-group) hypothet... 42 0.92
17gb|AC137609.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.92
18gb|AC084767.11| Oryza sativa (japonica cultivar-group) chromosom... 42 0.92
19gb|AC137003.3| Oryza sativa (japonica cultivar-group) Chromosome... 42 0.92
20gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.92
21gb|AC118346.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.92
22gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 gen... 42 0.92
23dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
24dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
25dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
26dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
27dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
29gb|AC090714.9| Oryza sativa chromosome 3 BAC OSJNBb0031G04 genom... 42 0.92
30dbj|AP004376.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
31dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
32dbj|AP006626.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
33dbj|AP004561.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
34dbj|AP003936.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
35dbj|AP005485.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
36dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
37dbj|AP003798.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
38gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.92
39gb|AC012647.18| Trypanosoma brucei chromosome 2 clone RPCI93-27H... 40 3.7
40gb|BT017456.1| Zea mays clone EL01N0407B10.c mRNA sequence 40 3.7
41gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence 40 3.7
42gb|AC147962.1| Oryza sativa chromosome 3 BAC OSJNBa0083K01 genom... 40 3.7
43gb|AC128645.5| Oryza sativa chromosome 3 BAC OSJNBb0016P23 genom... 40 3.7
44gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 3.7 
>gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate aldolase precursor, mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1577

 Score =  248 bits (125), Expect = 8e-63
 Identities = 162/176 (92%)
 Strand = Plus / Minus

                                                                        
Query: 100  gatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgtcg 159
            ||||||||||||||||||||||||||||||  ||| ||||| || |||||||||||||||
Sbjct: 1267 gatcagtagctgtagttcttgacgaacatgccctccttggcggccgcggcctcgccgtcg 1208

                                                                        
Query: 160  ctggtgtacttnncgagctgcgccagggagttggccttggcgcgcagcagnagcgcctcc 219
            |||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1207 ctggtgtacttgccgagctgcgccagggagttggccttggcgcgcagcagaagcgcctcc 1148

                                                                    
Query: 220  tgcgctnccccgacgttctccggccgcccgccccacgtnttgaggcaggtgttctg 275
            |||||  || |||||||||| ||||||||||||||||| |||| ||||||||||||
Sbjct: 1147 tgcgccgccgcgacgttctctggccgcccgccccacgtcttgaagcaggtgttctg 1092



 Score =  103 bits (52), Expect = 3e-19
 Identities = 55/56 (98%)
 Strand = Plus / Minus

                                                                    
Query: 3    gacacactggctggctaaggtgccctcaagctgctcaaggcgctactagcactctc 58
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1356 gacacactgcctggctaaggtgccctcaagctgctcaaggcgctactagcactctc 1301
to top
>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007B15 map S10318, complete sequence
          Length = 125243

 Score =  176 bits (89), Expect = 2e-41
 Identities = 156/180 (86%)
 Strand = Plus / Plus

                                                                         
Query: 98    cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgt 157
             ||||| |||||  |||||||||||||||||||  ||| |||||  | |||||||||||||
Sbjct: 63349 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 63408

                                                                         
Query: 158   cgctggtgtacttnncgagctgcgccagggagttggccttggcgcgcagcagnagcgcct 217
             |||||||||||||  ||||||||||||| ||||||||||||||||| || || ||||| |
Sbjct: 63409 cgctggtgtacttgccgagctgcgccagcgagttggccttggcgcggaggagcagcgcgt 63468

                                                                         
Query: 218   cctgcgctnccccgacgttctccggccgcccgccccacgtnttgaggcaggtgttctgca 277
             |||||||  ||   |||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct: 63469 cctgcgccgccttcacgttctccggctgcccgccccacgtcttgaggcacgtgttctgca 63528
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  176 bits (89), Expect = 2e-41
 Identities = 156/180 (86%)
 Strand = Plus / Plus

                                                                           
Query: 98      cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgt 157
               ||||| |||||  |||||||||||||||||||  ||| |||||  | |||||||||||||
Sbjct: 3469394 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 3469453

                                                                           
Query: 158     cgctggtgtacttnncgagctgcgccagggagttggccttggcgcgcagcagnagcgcct 217
               |||||||||||||  ||||||||||||| ||||||||||||||||| || || ||||| |
Sbjct: 3469454 cgctggtgtacttgccgagctgcgccagcgagttggccttggcgcggaggagcagcgcgt 3469513

                                                                           
Query: 218     cctgcgctnccccgacgttctccggccgcccgccccacgtnttgaggcaggtgttctgca 277
               |||||||  ||   |||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct: 3469514 cctgcgccgccttcacgttctccggctgcccgccccacgtcttgaggcacgtgttctgca 3469573



 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 237      ctccggccgcccgccccacgt 257
                |||||||||||||||||||||
Sbjct: 27953571 ctccggccgcccgccccacgt 27953551



 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 237      ctccggccgcccgccccacgt 257
                |||||||||||||||||||||
Sbjct: 24178098 ctccggccgcccgccccacgt 24178118
to top
>dbj|AK104899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C04, full
            insert sequence
          Length = 1492

 Score =  176 bits (89), Expect = 2e-41
 Identities = 156/180 (86%)
 Strand = Plus / Minus

                                                                        
Query: 98   cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgt 157
            ||||| |||||  |||||||||||||||||||  ||| |||||  | |||||||||||||
Sbjct: 1265 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 1206

                                                                        
Query: 158  cgctggtgtacttnncgagctgcgccagggagttggccttggcgcgcagcagnagcgcct 217
            |||||||||||||  ||||||||||||| ||||||||||||||||| || || ||||| |
Sbjct: 1205 cgctggtgtacttgccgagctgcgccagcgagttggccttggcgcggaggagcagcgcgt 1146

                                                                        
Query: 218  cctgcgctnccccgacgttctccggccgcccgccccacgtnttgaggcaggtgttctgca 277
            |||||||  ||   |||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct: 1145 cctgcgccgccttcacgttctccggctgcccgccccacgtcttgaggcacgtgttctgca 1086
to top
>dbj|AK073758.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068O18, full
            insert sequence
          Length = 1622

 Score =  176 bits (89), Expect = 2e-41
 Identities = 156/180 (86%)
 Strand = Plus / Minus

                                                                        
Query: 98   cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgt 157
            ||||| |||||  |||||||||||||||||||  ||| |||||  | |||||||||||||
Sbjct: 1261 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 1202

                                                                        
Query: 158  cgctggtgtacttnncgagctgcgccagggagttggccttggcgcgcagcagnagcgcct 217
            |||||||||||||  ||||||||||||| ||||||||||||||||| || || ||||| |
Sbjct: 1201 cgctggtgtacttgccgagctgcgccagcgagttggccttggcgcggaggagcagcgcgt 1142

                                                                        
Query: 218  cctgcgctnccccgacgttctccggccgcccgccccacgtnttgaggcaggtgttctgca 277
            |||||||  ||   |||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct: 1141 cctgcgccgccttcacgttctccggctgcccgccccacgtcttgaggcacgtgttctgca 1082
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  176 bits (89), Expect = 2e-41
 Identities = 156/180 (86%)
 Strand = Plus / Plus

                                                                           
Query: 98      cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgt 157
               ||||| |||||  |||||||||||||||||||  ||| |||||  | |||||||||||||
Sbjct: 3478098 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 3478157

                                                                           
Query: 158     cgctggtgtacttnncgagctgcgccagggagttggccttggcgcgcagcagnagcgcct 217
               |||||||||||||  ||||||||||||| ||||||||||||||||| || || ||||| |
Sbjct: 3478158 cgctggtgtacttgccgagctgcgccagcgagttggccttggcgcggaggagcagcgcgt 3478217

                                                                           
Query: 218     cctgcgctnccccgacgttctccggccgcccgccccacgtnttgaggcaggtgttctgca 277
               |||||||  ||   |||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct: 3478218 cctgcgccgccttcacgttctccggctgcccgccccacgtcttgaggcacgtgttctgca 3478277



 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 237      ctccggccgcccgccccacgt 257
                |||||||||||||||||||||
Sbjct: 27972871 ctccggccgcccgccccacgt 27972851



 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 237      ctccggccgcccgccccacgt 257
                |||||||||||||||||||||
Sbjct: 24489767 ctccggccgcccgccccacgt 24489787
to top
>gb|AY103557.1| Zea mays PCO070710 mRNA sequence
          Length = 1761

 Score =  172 bits (87), Expect = 4e-40
 Identities = 151/174 (86%)
 Strand = Plus / Minus

                                                                        
Query: 104  agtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgtcgctgg 163
            |||||||||||||||||||||||||   ||| |||||  | |||||||||||||||  ||
Sbjct: 1404 agtagctgtagttcttgacgaacattccctccttggcctcggcggcctcgccgtcggagg 1345

                                                                        
Query: 164  tgtacttnncgagctgcgccagggagttggccttggcgcgcagcagnagcgcctcctgcg 223
            |||||||  ||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 1344 tgtacttgccgagctgcgccagggagttggccttggcgcgcagcagcagcgcgtcctgcg 1285

                                                                  
Query: 224  ctnccccgacgttctccggccgcccgccccacgtnttgaggcaggtgttctgca 277
            |  ||  ||| || |||||| | |||||||| || |||||||||||||||||||
Sbjct: 1284 ccgccttgaccttgtccggctggccgccccaggtcttgaggcaggtgttctgca 1231
to top
>dbj|AK105927.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A10, full
            insert sequence
          Length = 2135

 Score =  155 bits (78), Expect = 9e-35
 Identities = 118/133 (88%)
 Strand = Plus / Minus

                                                                        
Query: 145  gcggcctcgccgtcgctggtgtacttnncgagctgcgccagggagttggccttggcgcgc 204
            ||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||| 
Sbjct: 1209 gcggcctcgccgtcgctggtgtacttgccgagctgcgccagcgagttggccttggcgcgg 1150

                                                                        
Query: 205  agcagnagcgcctcctgcgctnccccgacgttctccggccgcccgccccacgtnttgagg 264
            || || ||||| ||||||||  ||   |||||||||||| ||||||||||||| ||||||
Sbjct: 1149 aggagcagcgcgtcctgcgccgccttcacgttctccggctgcccgccccacgtcttgagg 1090

                         
Query: 265  caggtgttctgca 277
            || ||||||||||
Sbjct: 1089 cacgtgttctgca 1077
to top
>gb|AF017362.1|AF017362 Oryza sativa aldolase mRNA, complete cds
          Length = 1302

 Score =  153 bits (77), Expect = 4e-34
 Identities = 153/180 (85%)
 Strand = Plus / Minus

                                                                        
Query: 98   cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgt 157
            ||||| |||||  |||||||||||||||||||   || |||||  | ||||| |||||||
Sbjct: 1157 cggattagtagacgtagttcttgacgaacatgccttccttggcctcggcggcttcgccgt 1098

                                                                        
Query: 158  cgctggtgtacttnncgagctgcgccagggagttggccttggcgcgcagcagnagcgcct 217
            |||||||||||||  ||||||||||||| ||||||||||||||||| || || ||||| |
Sbjct: 1097 cgctggtgtacttgccgagctgcgccagcgagttggccttggcgcggaggagcagcgcgt 1038

                                                                        
Query: 218  cctgcgctnccccgacgttctccggccgcccgccccacgtnttgaggcaggtgttctgca 277
            |||||||  |    |||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct: 1037 cctgcgccgctttcacgttctccggctgcccgccccacgtcttgaggcacgtgttctgca 978
to top
>dbj|D13513.1|RICCHLALD Oryza sativa gene for cytoplasmic aldolase, complete cds, clone:Aldp
          Length = 2915

 Score =  153 bits (77), Expect = 4e-34
 Identities = 153/180 (85%)
 Strand = Plus / Minus

                                                                        
Query: 98   cggatcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgt 157
            ||||| |||||  |||||||||||||||||||  ||| |||||  | |||||||||||||
Sbjct: 2793 cggattagtagacgtagttcttgacgaacatgccctccttggcctcggcggcctcgccgt 2734

                                                                        
Query: 158  cgctggtgtacttnncgagctgcgccagggagttggccttggcgcgcagcagnagcgcct 217
            |||||||||||||  ||||||||||||| ||||||||||||||||| || || ||    |
Sbjct: 2733 cgctggtgtacttgccgagctgcgccagcgagttggccttggcgcggaggagcaggcggt 2674

                                                                        
Query: 218  cctgcgctnccccgacgttctccggccgcccgccccacgtnttgaggcaggtgttctgca 277
            |||||||  ||   |||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct: 2673 cctgcgccgccttcacgttctccggctgcccgccccacgtcttgaggcacgtgttctgca 2614
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 79/90 (87%)
 Strand = Plus / Minus

                                                                           
Query: 102     tcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgtcgct 161
               ||||||| ||||||||||||||||||||  |||  ||||  | |||||||||||||||||
Sbjct: 3543513 tcagtaggtgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgct 3543454

                                             
Query: 162     ggtgtacttnncgagctgcgccagggagtt 191
               |||||||||  ||||||||||||| |||||
Sbjct: 3543453 ggtgtacttgccgagctgcgccagcgagtt 3543424



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                           
Query: 218     cctgcgctnccccgacgttctccggccgcccgccccacgtnttgaggcaggtgttctgca 277
               |||||||  || ||||||||||| |||| | ||||||||| |||||||||||||||||||
Sbjct: 3543420 cctgcgccgccgcgacgttctcccgccggctgccccacgtcttgaggcaggtgttctgca 3543361
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 79/90 (87%)
 Strand = Plus / Minus

                                                                           
Query: 102     tcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgtcgct 161
               ||||||| ||||||||||||||||||||  |||  ||||  | |||||||||||||||||
Sbjct: 3543458 tcagtaggtgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgct 3543399

                                             
Query: 162     ggtgtacttnncgagctgcgccagggagtt 191
               |||||||||  ||||||||||||| |||||
Sbjct: 3543398 ggtgtacttgccgagctgcgccagcgagtt 3543369



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                           
Query: 218     cctgcgctnccccgacgttctccggccgcccgccccacgtnttgaggcaggtgttctgca 277
               |||||||  || ||||||||||| |||| | ||||||||| |||||||||||||||||||
Sbjct: 3543365 cctgcgccgccgcgacgttctcccgccggctgccccacgtcttgaggcaggtgttctgca 3543306
to top
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103647

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 79/90 (87%)
 Strand = Plus / Minus

                                                                         
Query: 102   tcagtagctgtagttcttgacgaacatgttctctttggcagctgcggcctcgccgtcgct 161
             ||||||| ||||||||||||||||||||  |||  ||||  | |||||||||||||||||
Sbjct: 58441 tcagtaggtgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgct 58382

                                           
Query: 162   ggtgtacttnncgagctgcgccagggagtt 191
             |||||||||  ||||||||||||| |||||
Sbjct: 58381 ggtgtacttgccgagctgcgccagcgagtt 58352



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                         
Query: 218   cctgcgctnccccgacgttctccggccgcccgccccacgtnttgaggcaggtgttctgca 277
             |||||||  || ||||||||||| |||| | ||||||||| |||||||||||||||||||
Sbjct: 58348 cctgcgccgccgcgacgttctcccgccggctgccccacgtcttgaggcaggtgttctgca 58289
to top
>gb|AY106811.1| Zea mays PCO109530 mRNA sequence
          Length = 1545

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                        
Query: 173  cgagctgcgccagggagttggccttggcgcgcagcagnagcgcctcctgcgctnccccga 232
            ||||||| ||||| ||||||||||| ||||||| ||| || |||| ||||||| || | |
Sbjct: 1173 cgagctgggccagcgagttggcctttgcgcgcaccagcagggccttctgcgctgcctcca 1114

                            
Query: 233  cgttctccggccgccc 248
            ||||||| || |||||
Sbjct: 1113 cgttctcagggcgccc 1098
to top
>ref|XM_482693.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 405

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 237 ctccggccgcccgccccacgt 257
           |||||||||||||||||||||
Sbjct: 192 ctccggccgcccgccccacgt 172
to top
>ref|NM_196900.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0071K18.21), mRNA
          Length = 984

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 237 ctccggccgcccgccccacgt 257
           |||||||||||||||||||||
Sbjct: 774 ctccggccgcccgccccacgt 754
to top
>gb|AC137609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0010H19, complete sequence
          Length = 162902

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 237   ctccggccgcccgccccacgt 257
             |||||||||||||||||||||
Sbjct: 49881 ctccggccgcccgccccacgt 49901
to top
>gb|AC084767.11| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0057P11
              map R606A, complete sequence
          Length = 163580

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 237    ctccggccgcccgccccacgt 257
              |||||||||||||||||||||
Sbjct: 147737 ctccggccgcccgccccacgt 147757
to top
>gb|AC137003.3| Oryza sativa (japonica cultivar-group) Chromosome 5 BAC clone
             OSJNBb0069G11, complete sequence
          Length = 174844

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 237   ctccggccgcccgccccacgt 257
             |||||||||||||||||||||
Sbjct: 96944 ctccggccgcccgccccacgt 96924
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 237      ctccggccgcccgccccacgt 257
                |||||||||||||||||||||
Sbjct: 19984276 ctccggccgcccgccccacgt 19984256



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 237      ctccggccgcccgccccacg 256
                ||||||||||||||||||||
Sbjct: 21061264 ctccggccgcccgccccacg 21061283
to top
>gb|AC118346.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0039F06, complete sequence
          Length = 133022

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 237   ctccggccgcccgccccacgt 257
             |||||||||||||||||||||
Sbjct: 27328 ctccggccgcccgccccacgt 27308
to top
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete
             sequence
          Length = 149758

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 237   ctccggccgcccgccccacgt 257
             |||||||||||||||||||||
Sbjct: 74044 ctccggccgcccgccccacgt 74064



 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 237   ctccggccgcccgccccacgt 257
             |||||||||||||||||||||
Sbjct: 66774 ctccggccgcccgccccacgt 66794
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 237      ctccggccgcccgccccacgt 257
                |||||||||||||||||||||
Sbjct: 16593468 ctccggccgcccgccccacgt 16593448



 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 237      ctccggccgcccgccccacgt 257
                |||||||||||||||||||||
Sbjct: 16586198 ctccggccgcccgccccacgt 16586178
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 237      ctccggccgcccgccccacgt 257
                |||||||||||||||||||||
Sbjct: 24057665 ctccggccgcccgccccacgt 24057685



 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 237      ctccggccgcccgccccacgt 257
                |||||||||||||||||||||
Sbjct: 21950504 ctccggccgcccgccccacgt 21950524



 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 237      ctccggccgcccgccccacgt 257
                |||||||||||||||||||||
Sbjct: 13870557 ctccggccgcccgccccacgt 13870577



 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 237      ctccggccgcccgccccacgt 257
                |||||||||||||||||||||
Sbjct: 10996684 ctccggccgcccgccccacgt 10996664
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 237      ctccggccgcccgccccacgt 257
                |||||||||||||||||||||
Sbjct: 12070445 ctccggccgcccgccccacgt 12070465
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 237     ctccggccgcccgccccacgt 257
               |||||||||||||||||||||
Sbjct: 6536709 ctccggccgcccgccccacgt 6536729
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 237      ctccggccgcccgccccacgt 257
                |||||||||||||||||||||
Sbjct: 10480128 ctccggccgcccgccccacgt 10480108



 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 237      ctccggccgcccgccccacgt 257
                |||||||||||||||||||||
Sbjct: 10366848 ctccggccgcccgccccacgt 10366868
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 237      ctccggccgcccgccccacgt 257
                |||||||||||||||||||||
Sbjct: 19977304 ctccggccgcccgccccacgt 19977284



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 237      ctccggccgcccgccccacg 256
                ||||||||||||||||||||
Sbjct: 21054293 ctccggccgcccgccccacg 21054312
to top
>gb|AC090714.9| Oryza sativa chromosome 3 BAC OSJNBb0031G04 genomic sequence, complete
              sequence
          Length = 137297

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 237    ctccggccgcccgccccacgt 257
              |||||||||||||||||||||
Sbjct: 136565 ctccggccgcccgccccacgt 136545
to top
>dbj|AP004376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0481F05
          Length = 139739

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 237   ctccggccgcccgccccacgt 257
             |||||||||||||||||||||
Sbjct: 85065 ctccggccgcccgccccacgt 85085
to top
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0690H04
          Length = 137319

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 237   ctccggccgcccgccccacgt 257
             |||||||||||||||||||||
Sbjct: 53085 ctccggccgcccgccccacgt 53105
to top
>dbj|AP006626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1042B08
          Length = 142032

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 237   ctccggccgcccgccccacgt 257
             |||||||||||||||||||||
Sbjct: 79293 ctccggccgcccgccccacgt 79313
to top
>dbj|AP004561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0465H09
          Length = 148590

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 237   ctccggccgcccgccccacgt 257
             |||||||||||||||||||||
Sbjct: 78276 ctccggccgcccgccccacgt 78296
to top
>dbj|AP003936.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1003_E05
          Length = 137352

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 237   ctccggccgcccgccccacgt 257
             |||||||||||||||||||||
Sbjct: 90411 ctccggccgcccgccccacgt 90391
to top
>dbj|AP005485.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1136_D12
          Length = 105521

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 237   ctccggccgcccgccccacgt 257
             |||||||||||||||||||||
Sbjct: 14952 ctccggccgcccgccccacgt 14972
to top
>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0028A08
          Length = 150818

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 237   ctccggccgcccgccccacgt 257
             |||||||||||||||||||||
Sbjct: 11151 ctccggccgcccgccccacgt 11171
to top
>dbj|AP003798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1005_H01
          Length = 128124

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 237   ctccggccgcccgccccacgt 257
             |||||||||||||||||||||
Sbjct: 36253 ctccggccgcccgccccacgt 36273
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 237      ctccggccgcccgccccacgt 257
                |||||||||||||||||||||
Sbjct: 16601709 ctccggccgcccgccccacgt 16601689



 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 237      ctccggccgcccgccccacgt 257
                |||||||||||||||||||||
Sbjct: 16594439 ctccggccgcccgccccacgt 16594419
to top
>gb|AC012647.18| Trypanosoma brucei chromosome 2 clone RPCI93-27H14, complete sequence
          Length = 118437

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   acatgttctctttggcagct 144
             ||||||||||||||||||||
Sbjct: 27603 acatgttctctttggcagct 27584
to top
>gb|BT017456.1| Zea mays clone EL01N0407B10.c mRNA sequence
          Length = 859

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                      
Query: 175 agctgcgccagggagttggccttggcgcgcagcagnagcgcct 217
           ||||| ||||| ||||||||||| ||||||| ||| || ||||
Sbjct: 666 agctgtgccagcgagttggcctttgcgcgcaccagcagggcct 624
to top
>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence
          Length = 1193948

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    acatgttctctttggcagct 144
              ||||||||||||||||||||
Sbjct: 323939 acatgttctctttggcagct 323958
to top
>gb|AC147962.1| Oryza sativa chromosome 3 BAC OSJNBa0083K01 genomic sequence, complete
             sequence
          Length = 167239

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   ctccggccgcccgccccacg 256
             ||||||||||||||||||||
Sbjct: 24014 ctccggccgcccgccccacg 23995
to top
>gb|AC128645.5| Oryza sativa chromosome 3 BAC OSJNBb0016P23 genomic sequence, complete
             sequence
          Length = 131250

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   ctccggccgcccgccccacg 256
             ||||||||||||||||||||
Sbjct: 39020 ctccggccgcccgccccacg 39039
to top
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 23      tgccctcaagctgctcaagg 42
               ||||||||||||||||||||
Sbjct: 2164719 tgccctcaagctgctcaagg 2164738


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,553,023
Number of Sequences: 3902068
Number of extensions: 1553023
Number of successful extensions: 28776
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28403
Number of HSP's gapped (non-prelim): 362
length of query: 280
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 258
effective length of database: 17,147,199,772
effective search space: 4423977541176
effective search space used: 4423977541176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top