ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23j10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FTSZ2_PYRHO (O58491) Cell division protein ftsZ homolog 2 32 0.39
2K0690_HUMAN (Q5JTH9) Protein KIAA0690 29 3.3
3HPR1_YEAST (P17629) Protein HPR1 29 3.3
4RECO_PASMU (P57974) DNA repair protein recO (Recombination prote... 28 4.3
5BT1_MAIZE (P29518) Protein brittle-1, chloroplast precursor 28 4.3
6VGLH_HHV6U (P68324) Glycoprotein H precursor 28 4.3
7VGLH_HHV6G (P68323) Glycoprotein H precursor 28 4.3
8EXO1_SCHPO (P53695) Exodeoxyribonuclease 1 (EC 3.1.-.-) (Exodeox... 28 5.7

>FTSZ2_PYRHO (O58491) Cell division protein ftsZ homolog 2|
          Length = 414

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 22  ARLLXPHTNYMHLHQQLIHKYVPMVSS-AHGEHDHGDRSIQYLCTKSSTDEV 174
           A L+  +T+  HLHQ   HK + +  S  HG+   GD  I Y   ++S  E+
Sbjct: 60  ADLIAMNTDAQHLHQIKAHKKLLLGKSITHGKGSGGDPRIGYRAAEASASEI 111



to top

>K0690_HUMAN (Q5JTH9) Protein KIAA0690|
          Length = 1297

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 134 RSSIYAPKAPPMKCLRPPHRRLSSSEAEFLLAKLEHVLL 250
           RS+    K P +KCL    R+LS+   EF+ A +  V+L
Sbjct: 826 RSTSSPAKRPRLKCLLHIVRKLSAEHKEFITALIPEVIL 864



to top

>HPR1_YEAST (P17629) Protein HPR1|
          Length = 752

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = -3

Query: 328 EADLISTKKALYEALMRQDELLAFIDKQDML 236
           E++LIS K+ LYE L   +++LA ++  D+L
Sbjct: 164 ESNLISYKQPLYEKLRHWNDILAKLENNDIL 194



to top

>RECO_PASMU (P57974) DNA repair protein recO (Recombination protein O)|
          Length = 240

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 4   YTNRYTARLLXPHTNYMHLHQQLIHKYVPMVSSAH 108
           Y N    R+L P T Y HL Q  +     + S+ H
Sbjct: 95  YVNELLCRVLEPETGYPHLFQDYLRCLTGLASAEH 129



to top

>BT1_MAIZE (P29518) Protein brittle-1, chloroplast precursor|
          Length = 436

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 116 MIMATDRSSIYAPKAPPMKCLRPPHRRLSSSEAE 217
           ++ A D   I A  APP    RPP RR   SE E
Sbjct: 72  VVRAADNCDIAASLAPPFPGSRPPGRRGRGSEEE 105



to top

>VGLH_HHV6U (P68324) Glycoprotein H precursor|
          Length = 694

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 24/90 (26%), Positives = 41/90 (45%)
 Frame = +2

Query: 41  TQITCIYTNNLYINMYQWLALRTESMIMATDRSSIYAPKAPPMKCLRPPHRRLSSSEAEF 220
           T +   Y +N+ I+ Y+W  +       A    +IY       K +   +   S  E  F
Sbjct: 375 TYLATAYESNVTISKYKWTDI-------ANTLQNIYE------KHMFFTNLTFSDRETLF 421

Query: 221 LLAKLEHVLLVDEREQLILTH*RLVEGLLC 310
           +LA++ +++  DER Q    H +L+ G LC
Sbjct: 422 MLAEIANIIPTDERMQ---RHMQLLIGNLC 448



to top

>VGLH_HHV6G (P68323) Glycoprotein H precursor|
          Length = 694

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 24/90 (26%), Positives = 41/90 (45%)
 Frame = +2

Query: 41  TQITCIYTNNLYINMYQWLALRTESMIMATDRSSIYAPKAPPMKCLRPPHRRLSSSEAEF 220
           T +   Y +N+ I+ Y+W  +       A    +IY       K +   +   S  E  F
Sbjct: 375 TYLATAYESNVTISKYKWTDI-------ANTLQNIYE------KHMFFTNLTFSDRETLF 421

Query: 221 LLAKLEHVLLVDEREQLILTH*RLVEGLLC 310
           +LA++ +++  DER Q    H +L+ G LC
Sbjct: 422 MLAEIANIIPTDERMQ---RHMQLLIGNLC 448



to top

>EXO1_SCHPO (P53695) Exodeoxyribonuclease 1 (EC 3.1.-.-) (Exodeoxyribonuclease|
           I) (Exonuclease I) (EXO I)
          Length = 571

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 122 MATDRSSIYAPKAPPMKCLRPPHRRLSSSEAEFLLAKLEHVLLVDERE 265
           +A     +Y PK   +  L PP R LS  E  F+ +  ++ L +D  E
Sbjct: 276 LAFRHQRVYCPKDKTLVHLSPPERELSVHEDAFIGSFFDNQLAIDIAE 323


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,101,637
Number of Sequences: 219361
Number of extensions: 769482
Number of successful extensions: 2176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2175
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top