Clone Information

BLAST Search Result

Clone Name	rbasd23j06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC108876.2\| Oryza sativa (japonica cultivar-group) chromosome...	133	9e-28
2	gb\|AC117265.2\| Oryza sativa (japonica cultivar-group) chromosome...	133	9e-28
3	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	133	9e-28
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	103	8e-19
5	dbj\|AP004367.4\| Oryza sativa (japonica cultivar-group) genomic D...	103	8e-19
6	ref\|NM_202539.1\| Arabidopsis thaliana unknown protein AT3G09560 ...	66	2e-07
7	ref\|NM_111790.3\| Arabidopsis thaliana unknown protein AT3G09560 ...	66	2e-07
8	emb\|BX824069.1\|CNS0A7EB Arabidopsis thaliana Full-length cDNA Co...	66	2e-07
9	gb\|AC120885.3\| Oryza sativa (japonica cultivar-group) chromosome...	52	0.003
10	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.003
11	dbj\|AK062893.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.003
12	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	52	0.003
13	ref\|NM_123652.2\| Arabidopsis thaliana unknown protein AT5G42870 ...	50	0.010
14	dbj\|AB008264.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	50	0.010
15	gb\|AC016661.7\|AC016661 Arabidopsis thaliana chromosome 3 BAC F11...	48	0.041
16	ref\|XM_717419.1\| Candida albicans SC5314 hypothetical protein (C...	44	0.64
17	ref\|XM_717280.1\| Candida albicans SC5314 hypothetical protein (C...	44	0.64
18	gb\|AC007440.6\|AC007440 Drosophila melanogaster, chromosome 2R, r...	44	0.64
19	dbj\|AP003578.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.64
20	dbj\|AP002883.2\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.64
21	gb\|AE003823.3\| Drosophila melanogaster chromosome 2R, section 27...	44	0.64
22	emb\|AL935054.11\| Mouse DNA sequence from clone RP23-280A12 on ch...	42	2.5
23	gb\|AC021657.19\| Homo sapiens 3 BAC RP11-490B19 (Roswell Park Can...	42	2.5
24	gb\|AC157645.8\| Medicago truncatula clone mth2-70l21, complete se...	42	2.5
25	gb\|AC078843.2\|AC078843 Homo sapiens chromosome 7 clone RP11-59F6...	42	2.5
26	gb\|AC009530.5\|AC009530 Homo sapiens chromosome 7 clone RP11-302L...	42	2.5
27	ref\|XM_640978.1\| Dictyostelium discoideum ABC transporter G fami...	40	10.0
28	gb\|AC102490.7\| Mus musculus chromosome 1, clone RP24-512M8, comp...	40	10.0
29	gb\|AC137004.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	10.0
30	emb\|CT010434.8\| Mouse DNA sequence from clone RP23-225H9 on chro...	40	10.0
31	gb\|CP000053.1\| Rickettsia felis URRWXCal2, complete genome	40	10.0
32	ref\|XM_503343.1\| Yarrowia lipolytica CLIB122, YALI0D27016g predi...	40	10.0
33	gb\|AC114806.5\| Homo sapiens BAC clone RP11-1251F13 from 4, compl...	40	10.0
34	gb\|AC079264.23\| Homo sapiens Xp BAC RP11-315B16 (Roswell Park Ca...	40	10.0
35	gb\|AF482392.1\| Dictyostelium discoideum ABC transporter AbcG14 (...	40	10.0
36	gb\|AC021842.7\|AC021842 Homo sapiens chromosome 8, clone RP11-472...	40	10.0
37	gb\|AF037042.2\|AF037042 Dictyostelium discoideum ras-related GTPa...	40	10.0
38	gb\|AC087901.20\| Mus musculus strain C57BL/6J chromosome 17 clone...	40	10.0
39	emb\|CR382130.1\| Yarrowia lipolytica chromosome D of strain CLIB1...	40	10.0
40	emb\|AL672278.12\| Mouse DNA sequence from clone RP23-465H23 on ch...	40	10.0

>gb|AC108876.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1525_A02,
             complete sequence
          Length = 93826

 Score =  133 bits (67), Expect = 9e-28
 Identities = 106/119 (89%)
 Strand = Plus / Plus

                                                                         
Query: 610   ccttggggttgatgataaaaatcttgcctttcgaaattcccatctttttgtatgtaagct 669
             |||| |||||||||||||| || || ||||| | ||||||||||||||||||  ||||||
Sbjct: 57545 cctttgggttgatgataaagattttcccttttggaattcccatctttttgtaactaagct 57604

                                                                        
Query: 670   catcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaaggaaaaagt 728
             |||| || ||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 57605 catctgtatctctgttgccaaatccagcataaaatggattgtaatcagaagggaaaagt 57663



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                         
Query: 448   aactacactacaaatcaacgtctggcagtggcaccttccagtaattccatgagttgtagt 507
             |||||||||||| |||||| ||||||| ||||| ||||||||||||||| || |||||||
Sbjct: 57015 aactacactacagatcaacatctggcaatggcatcttccagtaattccaggaattgtagt 57074

                     
Query: 508   cttcctgc 515
             ||||||||
Sbjct: 57075 cttcctgc 57082



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 87/102 (85%)
 Strand = Plus / Plus

                                                                         
Query: 511   cctgctcaaccaaagttgttggagggaacatgtcattgacaagagtatgcaaggaggtat 570
             |||||||||| | ||| |||||||||||||| |||| |||||| ||||| ||||||||||
Sbjct: 57367 cctgctcaacaagagtggttggagggaacatatcatggacaagggtatgtaaggaggtat 57426

                                                       
Query: 571   atgacttcacatcaactgaactattgatggccacttcaccct 612
             | |||||||| || || ||||| || ||||| ||||| ||||
Sbjct: 57427 aggacttcacgtcgacagaactgtttatggctacttccccct 57468



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 227   cagatcactacctaaaagatgaatgatc 254
             ||||||||| ||||||||||| ||||||
Sbjct: 56800 cagatcactccctaaaagatgtatgatc 56827

to top

>gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1281_H05,
              complete sequence
          Length = 163130

 Score =  133 bits (67), Expect = 9e-28
 Identities = 106/119 (89%)
 Strand = Plus / Plus

                                                                          
Query: 610    ccttggggttgatgataaaaatcttgcctttcgaaattcccatctttttgtatgtaagct 669
              |||| |||||||||||||| || || ||||| | ||||||||||||||||||  ||||||
Sbjct: 151902 cctttgggttgatgataaagattttcccttttggaattcccatctttttgtaactaagct 151961

                                                                         
Query: 670    catcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaaggaaaaagt 728
              |||| || ||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 151962 catctgtatctctgttgccaaatccagcataaaatggattgtaatcagaagggaaaagt 152020



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                          
Query: 448    aactacactacaaatcaacgtctggcagtggcaccttccagtaattccatgagttgtagt 507
              |||||||||||| |||||| ||||||| ||||| ||||||||||||||| || |||||||
Sbjct: 151372 aactacactacagatcaacatctggcaatggcatcttccagtaattccaggaattgtagt 151431

                      
Query: 508    cttcctgc 515
              ||||||||
Sbjct: 151432 cttcctgc 151439



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 87/102 (85%)
 Strand = Plus / Plus

                                                                          
Query: 511    cctgctcaaccaaagttgttggagggaacatgtcattgacaagagtatgcaaggaggtat 570
              |||||||||| | ||| |||||||||||||| |||| |||||| ||||| ||||||||||
Sbjct: 151724 cctgctcaacaagagtggttggagggaacatatcatggacaagggtatgtaaggaggtat 151783

                                                        
Query: 571    atgacttcacatcaactgaactattgatggccacttcaccct 612
              | |||||||| || || ||||| || ||||| ||||| ||||
Sbjct: 151784 aggacttcacgtcgacagaactgtttatggctacttccccct 151825



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 227    cagatcactacctaaaagatgaatgatc 254
              ||||||||| ||||||||||| ||||||
Sbjct: 151157 cagatcactccctaaaagatgtatgatc 151184

to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  133 bits (67), Expect = 9e-28
 Identities = 106/119 (89%)
 Strand = Plus / Plus

                                                                            
Query: 610      ccttggggttgatgataaaaatcttgcctttcgaaattcccatctttttgtatgtaagct 669
                |||| |||||||||||||| || || ||||| | ||||||||||||||||||  ||||||
Sbjct: 22562495 cctttgggttgatgataaagattttcccttttggaattcccatctttttgtaactaagct 22562554

                                                                           
Query: 670      catcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaaggaaaaagt 728
                |||| || ||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 22562555 catctgtatctctgttgccaaatccagcataaaatggattgtaatcagaagggaaaagt 22562613



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                            
Query: 448      aactacactacaaatcaacgtctggcagtggcaccttccagtaattccatgagttgtagt 507
                |||||||||||| |||||| ||||||| ||||| ||||||||||||||| || |||||||
Sbjct: 22561965 aactacactacagatcaacatctggcaatggcatcttccagtaattccaggaattgtagt 22562024

                        
Query: 508      cttcctgc 515
                ||||||||
Sbjct: 22562025 cttcctgc 22562032



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 87/102 (85%)
 Strand = Plus / Plus

                                                                            
Query: 511      cctgctcaaccaaagttgttggagggaacatgtcattgacaagagtatgcaaggaggtat 570
                |||||||||| | ||| |||||||||||||| |||| |||||| ||||| ||||||||||
Sbjct: 22562317 cctgctcaacaagagtggttggagggaacatatcatggacaagggtatgtaaggaggtat 22562376

                                                          
Query: 571      atgacttcacatcaactgaactattgatggccacttcaccct 612
                | |||||||| || || ||||| || ||||| ||||| ||||
Sbjct: 22562377 aggacttcacgtcgacagaactgtttatggctacttccccct 22562418



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 227      cagatcactacctaaaagatgaatgatc 254
                ||||||||| ||||||||||| ||||||
Sbjct: 22561750 cagatcactccctaaaagatgtatgatc 22561777



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 208      cgacgacggcgatgaccatc 227
                ||||||||||||||||||||
Sbjct: 21694467 cgacgacggcgatgaccatc 21694486

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  103 bits (52), Expect = 8e-19
 Identities = 97/112 (86%)
 Strand = Plus / Plus

                                                                            
Query: 610      ccttggggttgatgataaaaatcttgcctttcgaaattcccatctttttgtatgtaagct 669
                |||| |||||||||||||| || || ||||| | ||||||||||||||||||  ||||||
Sbjct: 25536426 ccttcgggttgatgataaagattttcccttttggaattcccatctttttgtaactaagct 25536485

                                                                    
Query: 670      catcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaagg 721
                 ||| || ||||||||| ||||||||| ||||||||||||||| || |||||
Sbjct: 25536486 tatctgtatctctgttgacaaatccagaataaaatggattgtaatcagaagg 25536537



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                            
Query: 441      ttgtcaaaactacactacaaatcaacgtctggcagtggcaccttccagtaattccatgag 500
                |||| |||||||||||||| |||||| | |||   ||||| ||||||||||||||| || 
Sbjct: 25535459 ttgttaaaactacactacagatcaacatttggagatggcatcttccagtaattccaggaa 25535518

                               
Query: 501      ttgtagtcttcctgc 515
                |||||||||||||||
Sbjct: 25535519 ttgtagtcttcctgc 25535533



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 529      ttggagggaacatgtcattgacaagagtatgcaaggaggtata 571
                ||||||||||||| |||| || ||| ||||| |||||||||||
Sbjct: 25536270 ttggagggaacatatcatggataagggtatgtaaggaggtata 25536312



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 207      ccgacgacggcgatgaccatca 228
                ||||||||||||||||||||||
Sbjct: 10997168 ccgacgacggcgatgaccatca 10997147



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 227      cagatcactacctaaaagatgaatgatc 254
                ||||||||| ||||||||||| ||||||
Sbjct: 25535240 cagatcactccctaaaagatgtatgatc 25535267

to top

>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0696E01
          Length = 194056

 Score =  103 bits (52), Expect = 8e-19
 Identities = 97/112 (86%)
 Strand = Plus / Plus

                                                                         
Query: 610   ccttggggttgatgataaaaatcttgcctttcgaaattcccatctttttgtatgtaagct 669
             |||| |||||||||||||| || || ||||| | ||||||||||||||||||  ||||||
Sbjct: 64029 ccttcgggttgatgataaagattttcccttttggaattcccatctttttgtaactaagct 64088

                                                                 
Query: 670   catcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaagg 721
              ||| || ||||||||| ||||||||| ||||||||||||||| || |||||
Sbjct: 64089 tatctgtatctctgttgacaaatccagaataaaatggattgtaatcagaagg 64140



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                         
Query: 441   ttgtcaaaactacactacaaatcaacgtctggcagtggcaccttccagtaattccatgag 500
             |||| |||||||||||||| |||||| | |||   ||||| ||||||||||||||| || 
Sbjct: 63062 ttgttaaaactacactacagatcaacatttggagatggcatcttccagtaattccaggaa 63121

                            
Query: 501   ttgtagtcttcctgc 515
             |||||||||||||||
Sbjct: 63122 ttgtagtcttcctgc 63136



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 529   ttggagggaacatgtcattgacaagagtatgcaaggaggtata 571
             ||||||||||||| |||| || ||| ||||| |||||||||||
Sbjct: 63873 ttggagggaacatatcatggataagggtatgtaaggaggtata 63915



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 227   cagatcactacctaaaagatgaatgatc 254
             ||||||||| ||||||||||| ||||||
Sbjct: 62843 cagatcactccctaaaagatgtatgatc 62870

to top

>ref|NM_202539.1| Arabidopsis thaliana unknown protein AT3G09560 transcript variant
            AT3G09560.2 mRNA, complete cds
          Length = 3465

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                        
Query: 483  ttccagtaattccatgagttgtagtcttcctgctcaaccaaagttgttggagggaacatg 542
            |||||| ||||||||| ||| || |||||||||||||| |  |  |||||||| ||||||
Sbjct: 3104 ttccagaaattccatgggttataatcttcctgctcaacaagtgaagttggaggaaacatg 3045

                             
Query: 543  tcattgacaagagtatg 559
            || ||||||||||||||
Sbjct: 3044 tcgttgacaagagtatg 3028

to top

>ref|NM_111790.3| Arabidopsis thaliana unknown protein AT3G09560 transcript variant
            AT3G09560.1 mRNA, complete cds
          Length = 3511

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                        
Query: 483  ttccagtaattccatgagttgtagtcttcctgctcaaccaaagttgttggagggaacatg 542
            |||||| ||||||||| ||| || |||||||||||||| |  |  |||||||| ||||||
Sbjct: 3150 ttccagaaattccatgggttataatcttcctgctcaacaagtgaagttggaggaaacatg 3091

                             
Query: 543  tcattgacaagagtatg 559
            || ||||||||||||||
Sbjct: 3090 tcgttgacaagagtatg 3074

to top

>emb|BX824069.1|CNS0A7EB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH1ZD03 of Hormone Treated Callus of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 3442

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                        
Query: 483  ttccagtaattccatgagttgtagtcttcctgctcaaccaaagttgttggagggaacatg 542
            |||||| ||||||||| ||| || |||||||||||||| |  |  |||||||| ||||||
Sbjct: 3145 ttccagaaattccatgggttataatcttcctgctcaacaagtgaagttggaggaaacatg 3086

                             
Query: 543  tcattgacaagagtatg 559
            || ||||||||||||||
Sbjct: 3085 tcgttgacaagagtatg 3069

to top

>gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0042J05, complete sequence
          Length = 150295

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                           
Query: 664   taagctcatcagtgtctctgttgccaaatccagcataaaatggatt 709
             |||||||||| || ||||| || |||||||||||||| ||||||||
Sbjct: 70119 taagctcatctgtatctctatttccaaatccagcatagaatggatt 70074

to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                              
Query: 664      taagctcatcagtgtctctgttgccaaatccagcataaaatggatt 709
                |||||||||| || ||||| || |||||||||||||| ||||||||
Sbjct: 23054116 taagctcatctgtatctctatttccaaatccagcatagaatggatt 23054071

to top

>dbj|AK062893.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-E06, full
           insert sequence
          Length = 1108

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 664 taagctcatcagtgtctctgttgccaaatccagcataaaatggatt 709
           |||||||||| || ||||| || |||||||||||||| ||||||||
Sbjct: 436 taagctcatctgtatctctatttccaaatccagcatagaatggatt 391



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 483 ttccagtaattccatgagttgtagtcttcctgctca 518
           |||||||||||||| |  |||||||| |||||||||
Sbjct: 620 ttccagtaattccaagtattgtagtcctcctgctca 585

to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                              
Query: 664      taagctcatcagtgtctctgttgccaaatccagcataaaatggatt 709
                |||||||||| || ||||| || |||||||||||||| ||||||||
Sbjct: 23364026 taagctcatctgtatctctatttccaaatccagcatagaatggatt 23363981

to top

>ref|NM_123652.2| Arabidopsis thaliana unknown protein AT5G42870 mRNA, complete cds
          Length = 3049

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 668  ctcatcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaaggaaa 724
            |||||| ||||||||||| ||||| |||||||| ||||| ||||  |||| ||||||
Sbjct: 2583 ctcatctgtgtctctgtttccaaaaccagcatagaatgggttgtgttcgggaggaaa 2527

to top

>dbj|AB008264.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBD2
          Length = 79976

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                      
Query: 668   ctcatcagtgtctctgttgccaaatccagcataaaatggattgtagtcggaaggaaa 724
             |||||| ||||||||||| ||||| |||||||| ||||| ||||  |||| ||||||
Sbjct: 15201 ctcatctgtgtctctgtttccaaaaccagcatagaatgggttgtgttcgggaggaaa 15257

to top

>gb|AC016661.7|AC016661 Arabidopsis thaliana chromosome 3 BAC F11F8 genomic sequence, complete
             sequence
          Length = 107603

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 528   gttggagggaacatgtcattgacaagagtatg 559
             |||||||| |||||||| ||||||||||||||
Sbjct: 33479 gttggaggaaacatgtcgttgacaagagtatg 33510

to top

>ref|XM_717419.1| Candida albicans SC5314 hypothetical protein (CaO19_1462), mRNA
          Length = 2346

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 670  catcagtgtctctgttgccaaatccagcataaaatgga 707
            ||||||||  ||| || |||||||||||||||||||||
Sbjct: 1414 catcagtgattctattaccaaatccagcataaaatgga 1377

to top

>ref|XM_717280.1| Candida albicans SC5314 hypothetical protein (CaO19_9037), mRNA
          Length = 2346

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 670  catcagtgtctctgttgccaaatccagcataaaatgga 707
            ||||||||  ||| || |||||||||||||||||||||
Sbjct: 1414 catcagtgattctattaccaaatccagcataaaatgga 1377

to top

>gb|AC007440.6|AC007440 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone
             BACR37I09, complete sequence
          Length = 184621

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 584   aactgaactattgatggccact 605
             ||||||||||||||||||||||
Sbjct: 56683 aactgaactattgatggccact 56662

to top

>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0682B08
          Length = 138376

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 207   ccgacgacggcgatgaccatca 228
             ||||||||||||||||||||||
Sbjct: 26050 ccgacgacggcgatgaccatca 26029

to top

>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0487H02
          Length = 145491

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 207    ccgacgacggcgatgaccatca 228
              ||||||||||||||||||||||
Sbjct: 100010 ccgacgacggcgatgaccatca 99989

to top

>gb|AE003823.3| Drosophila melanogaster chromosome 2R, section 27 of 73 of the complete
              sequence
          Length = 292919

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 584    aactgaactattgatggccact 605
              ||||||||||||||||||||||
Sbjct: 218033 aactgaactattgatggccact 218012

to top

>emb|AL935054.11| Mouse DNA sequence from clone RP23-280A12 on chromosome 11 Contains the
              5' end of the gene for a novel protein (C330012F17Rik,
              C130096N06Rik), a ribosomal protein L37a (Rpl37a)
              pseudogene, a pseudogene similar to part of a novel protein
              (D130064H19Rik), a fibrillarin (Fbl) pseudogene, the 5' end
              of the gene for a novel protein (4931428D14Rik)
              (2300003H10) and three CpG islands, complete sequence
          Length = 199018

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 525    gttgttggagggaacatgtca 545
              |||||||||||||||||||||
Sbjct: 177104 gttgttggagggaacatgtca 177084

to top

>gb|AC021657.19| Homo sapiens 3 BAC RP11-490B19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 170046

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 351    gacagaattctgctgtggcga 371
              |||||||||||||||||||||
Sbjct: 114010 gacagaattctgctgtggcga 114030

to top

>gb|AC157645.8| Medicago truncatula clone mth2-70l21, complete sequence
          Length = 118562

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 669   tcatcagtgtctctgttgccaaatccagcataaaatggatt 709
             |||||||||||||| || ||||| |||||||| || |||||
Sbjct: 19894 tcatcagtgtctctatttccaaaaccagcatagaacggatt 19854

to top

>gb|AC078843.2|AC078843 Homo sapiens chromosome 7 clone RP11-59F6, complete sequence
          Length = 179416

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 472   gcagtggcaccttccagtaattcca 496
             |||||||| ||||||||||||||||
Sbjct: 45005 gcagtggctccttccagtaattcca 44981

to top

>gb|AC009530.5|AC009530 Homo sapiens chromosome 7 clone RP11-302L6, complete sequence
          Length = 189653

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 472    gcagtggcaccttccagtaattcca 496
              |||||||| ||||||||||||||||
Sbjct: 160228 gcagtggctccttccagtaattcca 160204

to top

>ref|XM_640978.1| Dictyostelium discoideum ABC transporter G family protein
            (DDB0191234), partial mRNA
          Length = 4320

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 438  tacttgtcaaaactacacta 457
            ||||||||||||||||||||
Sbjct: 4074 tacttgtcaaaactacacta 4093

to top

>gb|AC102490.7| Mus musculus chromosome 1, clone RP24-512M8, complete sequence
          Length = 133883

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 621   atgataaaaatcttgccttt 640
             ||||||||||||||||||||
Sbjct: 71416 atgataaaaatcttgccttt 71435

to top

>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
             complete sequence
          Length = 155402

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   cgacgacggcgatgaccatc 227
             ||||||||||||||||||||
Sbjct: 85643 cgacgacggcgatgaccatc 85662

to top

>emb|CT010434.8| Mouse DNA sequence from clone RP23-225H9 on chromosome 17, complete
             sequence
          Length = 218000

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    ttgacaatttctcttccctg 57
             ||||||||||||||||||||
Sbjct: 95538 ttgacaatttctcttccctg 95557



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    ttgacaatttctcttccctg 57
             ||||||||||||||||||||
Sbjct: 62125 ttgacaatttctcttccctg 62106

to top

>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    gttggacagaattctgctgt 366
              ||||||||||||||||||||
Sbjct: 112282 gttggacagaattctgctgt 112301

to top

>ref|XM_503343.1| Yarrowia lipolytica CLIB122, YALI0D27016g predicted mRNA
          Length = 2172

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 683  gttgccaaatccagcataaaatggattg 710
            ||||||||||||||| || |||||||||
Sbjct: 1419 gttgccaaatccagcgtagaatggattg 1392

to top

>gb|AC114806.5| Homo sapiens BAC clone RP11-1251F13 from 4, complete sequence
          Length = 138121

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   gcagctgctgataacagatt 176
             ||||||||||||||||||||
Sbjct: 50146 gcagctgctgataacagatt 50127

to top

>gb|AC079264.23| Homo sapiens Xp BAC RP11-315B16 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 194851

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 433  tgctgtacttgtcaaaacta 452
            ||||||||||||||||||||
Sbjct: 3726 tgctgtacttgtcaaaacta 3745

to top

>gb|AF482392.1| Dictyostelium discoideum ABC transporter AbcG14 (abcG14) gene,
            complete cds
          Length = 6664

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 438  tacttgtcaaaactacacta 457
            ||||||||||||||||||||
Sbjct: 5620 tacttgtcaaaactacacta 5639

to top

>gb|AC021842.7|AC021842 Homo sapiens chromosome 8, clone RP11-472N16, complete sequence
          Length = 190044

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     aagtaatctaaataaactga 97
              ||||||||||||||||||||
Sbjct: 167407 aagtaatctaaataaactga 167388

to top

>gb|AF037042.2|AF037042 Dictyostelium discoideum ras-related GTPase RacF1 (racF1) gene,
           complete cds; tRNA-Glu gene, complete sequence; and
           unknown genes
          Length = 5057

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 tacttgtcaaaactacacta 457
           ||||||||||||||||||||
Sbjct: 931 tacttgtcaaaactacacta 950

to top

>gb|AC087901.20| Mus musculus strain C57BL/6J chromosome 17 clone rp23-22l23, complete
             sequence
          Length = 214372

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 473   cagtggcaccttccagtaattcca 496
             |||||||||||||| |||||||||
Sbjct: 43599 cagtggcaccttcctgtaattcca 43576

to top

>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 683     gttgccaaatccagcataaaatggattg 710
               ||||||||||||||| || |||||||||
Sbjct: 3596428 gttgccaaatccagcgtagaatggattg 3596401

to top

>emb|AL672278.12| Mouse DNA sequence from clone RP23-465H23 on chromosome 16, complete
              sequence
          Length = 187418

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 597    atggccacttcacccttggg 616
              ||||||||||||||||||||
Sbjct: 109598 atggccacttcacccttggg 109617


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,228,912
Number of Sequences: 3902068
Number of extensions: 6228912
Number of successful extensions: 110902
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110500
Number of HSP's gapped (non-prelim): 399
length of query: 728
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 705
effective length of database: 17,143,297,704
effective search space: 12086024881320
effective search space used: 12086024881320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result