ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23j04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KAPR_YEAST (P07278) cAMP-dependent protein kinase regulatory sub... 31 3.7
2DHYS_METKA (Q8TXD7) Probable deoxyhypusine synthase (EC 2.5.1.46... 30 6.4

>KAPR_YEAST (P07278) cAMP-dependent protein kinase regulatory subunit (PKA|
           regulatory subunit)
          Length = 415

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 374 PQE*RSTTDLVNNNMNLPNISIILQFSSEYHTNKHNFANHIHKKRRCNYNANDFVMF 544
           P+E ++   L  N +N  N S  LQFS+ Y   +        K R   + A + V+F
Sbjct: 5   PKESQAELQLFQNEINAANPSDFLQFSANYFNKRLEQQRAFLKAREPEFKAKNIVLF 61



to top

>DHYS_METKA (Q8TXD7) Probable deoxyhypusine synthase (EC 2.5.1.46) (DHS)|
          Length = 297

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 224 ADEAPMIEVPGVLDQIVGGFIWVLIQTH 307
           ADE   I  PG+LD +VG  +W+  Q H
Sbjct: 162 ADEGVPIYSPGILDSMVGLHVWIHSQDH 189


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,722,523
Number of Sequences: 219361
Number of extensions: 2146392
Number of successful extensions: 4701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4700
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 8240858456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top