ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23i24 |
|---|---|
| Clone Library Name | barley_pub |
>PAHX_HUMAN (O14832) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC| 1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) Length = 338 Score = 51.2 bits (121), Expect = 3e-06 Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 7/128 (5%) Frame = -1 Query: 624 IQXMYIFXXPGIGXXVVPHQXNTFLYTEPLSCTGL----WLALEDATTTNGCLWAIPGSH 457 + M I P G H + L+ P + L W A+E + NGCL +PG+H Sbjct: 154 MHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTH 213 Query: 456 KNGLK-RRMIRDENGTH--FDRPSPLYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPV 286 K LK + E G + F + K V L M+ GD V H L+H S +N + Sbjct: 214 KGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQG 273 Query: 285 SRHALSLH 262 R A+S H Sbjct: 274 FRKAISCH 281
>PAHX_CAEEL (O62515) Probable phytanoyl-CoA dioxygenase (EC 1.14.11.18)| (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) Length = 312 Score = 50.1 bits (118), Expect = 6e-06 Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 3/113 (2%) Frame = -1 Query: 519 WLALEDATTTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVP---LEMKS 349 W A+E T NGCL +PG+HK L G + D P +EM+ Sbjct: 160 WTAMEKITRANGCLVVVPGTHKGVLLPHEYPKWEGGVNKAYHGIQDYDTSTPRIHVEMEP 219 Query: 348 GDFVVIHGDLVHQSFENLSPVSRHALSLHVVDMEGCKWSKDNWIQRKTAPEPL 190 GD V H L+H S N + R A+S H + + C++ ++T E + Sbjct: 220 GDTVFFHPILIHGSGANRTEGFRKAISCHYANDDLCRYVNVEGTTQETLAEEI 272
>PAHX_MOUSE (O35386) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC| 1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) (Lupus nephritis-associated peptide 1) Length = 338 Score = 48.1 bits (113), Expect = 2e-05 Identities = 41/134 (30%), Positives = 56/134 (41%), Gaps = 13/134 (9%) Frame = -1 Query: 624 IQXMYIFXXPGIGXXVVPHQXNTFLYTEPLSCTGL----WLALEDATTTNGCLWAIPGSH 457 + M I P +G H + L+ P + L W A+E NGCL +PG+H Sbjct: 154 LHGMLINKPPDVGKKTSRHPLHQDLHYFPFRPSNLIVCAWTAMEHIDRNNGCLVVLPGTH 213 Query: 456 KNGLK-RRMIRDENGTH--------FDRPSPLYDQKEFVPLEMKSGDFVVIHGDLVHQSF 304 K LK + E G + +D SP V L M+ GD V H L+H S Sbjct: 214 KGTLKPHDYPKWEGGVNKMYHGIQDYDPNSPR------VHLVMEKGDTVFFHPLLIHGSG 267 Query: 303 ENLSPVSRHALSLH 262 N + R A+S H Sbjct: 268 RNKTQGFRKAISCH 281
>PAHX_RAT (P57093) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC| 1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) Length = 338 Score = 47.0 bits (110), Expect = 5e-05 Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 13/143 (9%) Frame = -1 Query: 624 IQXMYIFXXPGIGXXVVPHQXNTFLYTEPLSCTGL----WLALEDATTTNGCLWAIPGSH 457 + M I P G H + L+ P + L W A+E NGCL +PG+H Sbjct: 154 MHTMLINKPPDSGKKTSRHPLHQDLHFFPFRPSNLIVCAWTAMEHIDRNNGCLVVLPGTH 213 Query: 456 KNGLK-RRMIRDENGTH--------FDRPSPLYDQKEFVPLEMKSGDFVVIHGDLVHQSF 304 K LK + E G + +D SP V L M+ GD V H L+H S Sbjct: 214 KGPLKPHDYPKWEGGVNKMYHGIQDYDPDSPR------VHLVMEKGDTVFFHPLLIHGSG 267 Query: 303 ENLSPVSRHALSLHVVDMEGCKW 235 N + R A+S H + CK+ Sbjct: 268 RNRTQGFRKAISCHYGSSD-CKY 289
>Y3657_MYCBO (P67773) Hypothetical protein Mb3657| Length = 291 Score = 45.8 bits (107), Expect = 1e-04 Identities = 30/94 (31%), Positives = 48/94 (51%) Frame = -1 Query: 543 EPLSCTGLWLALEDATTTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVP 364 +PL C L +AL D T NG +PGSH+ +RPSP Y + + P Sbjct: 141 QPLLCNAL-IALCDFTADNGATQVVPGSHRWP--------------ERPSPPYPEGK--P 183 Query: 363 LEMKSGDFVVIHGDLVHQSFENLSPVSRHALSLH 262 +E+ +GD ++ +G L H + N + R AL+++ Sbjct: 184 VEINAGDALIWNGSLWHTAAANRTDAPRPALTIN 217
>Y3633_MYCTU (P67772) Hypothetical protein Rv3633/MT3735| Length = 291 Score = 45.8 bits (107), Expect = 1e-04 Identities = 30/94 (31%), Positives = 48/94 (51%) Frame = -1 Query: 543 EPLSCTGLWLALEDATTTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVP 364 +PL C L +AL D T NG +PGSH+ +RPSP Y + + P Sbjct: 141 QPLLCNAL-IALCDFTADNGATQVVPGSHRWP--------------ERPSPPYPEGK--P 183 Query: 363 LEMKSGDFVVIHGDLVHQSFENLSPVSRHALSLH 262 +E+ +GD ++ +G L H + N + R AL+++ Sbjct: 184 VEINAGDALIWNGSLWHTAAANRTDAPRPALTIN 217
>PAHX_BOVIN (O18778) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC| 1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) Length = 337 Score = 45.8 bits (107), Expect = 1e-04 Identities = 32/92 (34%), Positives = 40/92 (43%), Gaps = 3/92 (3%) Frame = -1 Query: 519 WLALEDATTTNGCLWAIPGSHKNGLKRRMIRD-ENGTH--FDRPSPLYDQKEFVPLEMKS 349 W A+E NGCL +PG+HK L+ E G + F V L M+ Sbjct: 193 WTAMEHIDRNNGCLVVLPGTHKGPLQPHDYPQWEGGVNIMFHGIQDYDKNNARVHLVMEK 252 Query: 348 GDFVVIHGDLVHQSFENLSPVSRHALSLHVVD 253 GD V H L+H S N S R A+S H D Sbjct: 253 GDTVFFHPLLIHGSGRNKSQGFRKAISCHFAD 284
>CFT2_YEAST (Q12102) Protein CFT2 (Cleavage factor two protein 2) (105 kDa| protein associated with polyadenylation factor I) Length = 859 Score = 32.0 bits (71), Expect = 1.7 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = +2 Query: 68 NEEKTALLRSLPKFHCAE--DKQLELLAGDISFISNWLN*DTYSGSGAVFLC 217 N EKT L+ + P F CA DK LE++ D NW T+ G FLC Sbjct: 358 NSEKTTLILTKPSFECASSLDKILEIVEQD---ERNW---KTFPEDGKSFLC 403
>ECTD_BORBR (Q7WHJ0) Ectoine hydroxylase (EC 1.17.-.-)| Length = 308 Score = 31.6 bits (70), Expect = 2.2 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 16/102 (15%) Frame = -1 Query: 537 LSCTGLWLALEDATTTNGCLWAIPGSHKNGL-----------KRRMIRDENGTHFDRPSP 391 LSC+ L L D TNG L +PGSH+ + K+ + + E G P P Sbjct: 166 LSCSVL---LTDNNETNGPLMLVPGSHRQFISCVGETPRDHYKQSLKKQEYGV----PDP 218 Query: 390 -----LYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSR 280 L +Q + K+G V + +H S N+SP R Sbjct: 219 VSLQLLAEQGGISTMTGKAGSVVFFDCNTMHGSNSNISPWPR 260
>NQO3_THET8 (Q56223) NADH-quinone oxidoreductase subunit 3 (EC 1.6.99.5) (NADH| dehydrogenase I chain 3) (NDH-1 subunit 3) Length = 783 Score = 31.2 bits (69), Expect = 2.8 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%) Frame = -1 Query: 468 PGSHKNGLKRR-MIRDENGTHFDRPSPLYDQKEFVPLE--MKSGDFVVIHGDLVHQSFEN 298 P ++ GL+ ++ G +D P LY FVP E +K FVV+H +H E Sbjct: 537 PAANARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVVMHLSHLHPLAER 596 Query: 297 LSPVSRHALSL-----HVVDMEG 244 + V A + H+V++EG Sbjct: 597 YAHVVLPAPTFYEKRGHLVNLEG 619
>Y1539_MYCBO (P67771) Hypothetical protein Mb1539| Length = 273 Score = 31.2 bits (69), Expect = 2.8 Identities = 21/101 (20%), Positives = 39/101 (38%) Frame = -1 Query: 570 HQXNTFLYTEPLSCTGLWLALEDATTTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSP 391 HQ + + ++ + A++ T G +PGSH+ ++P Sbjct: 126 HQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQ--------------RIEKPDH 171 Query: 390 LYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSRHALS 268 Y + VP++ +G V L H + N S R A++ Sbjct: 172 TYLARNAVPVQCAAGSLFVFDSTLWHAAGRNTSGKDRLAIN 212
>Y1501_MYCTU (P67770) Hypothetical protein Rv1501/MT1550| Length = 273 Score = 31.2 bits (69), Expect = 2.8 Identities = 21/101 (20%), Positives = 39/101 (38%) Frame = -1 Query: 570 HQXNTFLYTEPLSCTGLWLALEDATTTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSP 391 HQ + + ++ + A++ T G +PGSH+ ++P Sbjct: 126 HQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQ--------------RIEKPDH 171 Query: 390 LYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSRHALS 268 Y + VP++ +G V L H + N S R A++ Sbjct: 172 TYLARNAVPVQCAAGSLFVFDSTLWHAAGRNTSGKDRLAIN 212
>GLGB_SYNPX (Q7U646) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 775 Score = 30.8 bits (68), Expect = 3.7 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 2/101 (1%) Frame = -1 Query: 486 GCLWA--IPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVPLEMKSGDFVVIHGDLVH 313 G +W IPG + L + IR ++G + + P Q E P Sbjct: 172 GGIWELFIPGLAEGSLYKYEIRTQDGHCYQKADPYGFQHEVRP----------------- 214 Query: 312 QSFENLSPVSRHALSLHVVDMEGCKWSKDNWIQRKTAPEPL 190 +N S V+R ++G +WS +W+QR+ + PL Sbjct: 215 ---DNSSVVAR---------LDGFQWSDGSWMQRRDSSNPL 243
>MRE11_METTH (O26641) DNA double-strand break repair protein mre11| Length = 587 Score = 30.4 bits (67), Expect = 4.8 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -1 Query: 354 KSGDFVVIHGDLVHQSFENLSPVSRHALSLHVVDMEG 244 K DF++I GDL H + N+ V R L L V G Sbjct: 207 KDVDFMIIAGDLFHSNIPNMETVKRATLELRRVREAG 243
>OTUD3_HUMAN (Q5T2D3) OTU domain-containing protein 3| Length = 398 Score = 30.4 bits (67), Expect = 4.8 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = -1 Query: 489 NGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVPLEMKSGDFVVIHGD 322 N LW I G+ K+ ++ I G H+D + D E P +++ DF ++H D Sbjct: 156 NAPLWQIRGTEKSSVRELHIAYRYGEHYDSVRRINDNSE-APAHLQT-DFQMLHQD 209
>ECTD_BORPA (Q7W977) Ectoine hydroxylase (EC 1.17.-.-)| Length = 308 Score = 29.6 bits (65), Expect = 8.2 Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 16/102 (15%) Frame = -1 Query: 537 LSCTGLWLALEDATTTNGCLWAIPGSHKNGL-----------KRRMIRDENGTHFDRPSP 391 LSC+ L L D NG L +PGSH+ + K+ + + E G P P Sbjct: 166 LSCSVL---LTDNNEANGPLMLVPGSHRQFISCVGETPRDHYKQSLKKQEYGV----PDP 218 Query: 390 -----LYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSR 280 L +Q + K+G V + +H S N+SP R Sbjct: 219 VSLQLLAEQGGISTMTGKAGSVVFFDCNTMHGSNSNISPWPR 260 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,557,369 Number of Sequences: 219361 Number of extensions: 1881532 Number of successful extensions: 4517 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4411 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4510 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
