ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23i23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK069925.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 5e-37
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 105 9e-20
3dbj|AP005397.2| Oryza sativa (japonica cultivar-group) genomic D... 105 9e-20
4ref|XM_482580.1| Oryza sativa (japonica cultivar-group), mRNA 66 8e-08
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 66 8e-08
6dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic D... 66 8e-08
7ref|NM_202094.1| Arabidopsis thaliana prenyl-dependent CAAX prot... 52 0.001
8ref|NM_101293.3| Arabidopsis thaliana prenyl-dependent CAAX prot... 52 0.001
9gb|AY091004.1| Arabidopsis thaliana unknown protein (At1g14270) ... 52 0.001
10emb|BX815142.1|CNS0ACWM Arabidopsis thaliana Full-length cDNA Co... 52 0.001
11gb|AY087512.1| Arabidopsis thaliana clone 36233 mRNA, complete s... 52 0.001
12emb|AL116499.1|CNS01D8B Botrytis cinerea strain T4 cDNA library 44 0.29
13emb|AL114521.1|CNS01BPD Botrytis cinerea strain T4 cDNA library 44 0.29
14emb|AL111401.1|CNS019AP Botrytis cinerea strain T4 cDNA library 44 0.29
15emb|BX813523.1|CNS0ADQW Arabidopsis thaliana Full-length cDNA Co... 44 0.29
16emb|BX817801.1|CNS0ACKF Arabidopsis thaliana Full-length cDNA Co... 44 0.29
17gb|AC121796.3| Mus musculus BAC clone RP23-423D22 from chromosom... 40 4.6
18gb|AC165065.2| Phakopsora pachyrhizi clone JGIAFNA-309D18, compl... 40 4.6
19gb|AC117589.13| Mus musculus chromosome 18, clone RP23-222A8, co... 40 4.6
20gb|AC005035.2| Homo sapiens BAC clone RP11-353P23 from 2, comple... 40 4.6
21gb|AC149598.2| Mus musculus BAC clone RP24-119N9 from 18, comple... 40 4.6

>dbj|AK069925.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036B16, full
            insert sequence
          Length = 2033

 Score =  163 bits (82), Expect = 5e-37
 Identities = 123/137 (89%)
 Strand = Plus / Minus

                                                                        
Query: 172  aagccttcaagatgcccccaatagctccttgatatcgnacccttgcaactgaagaaaggt 231
            ||||||||||||||| ||||| ||||||||||||||  ||||||||| ||||||||||||
Sbjct: 1872 aagccttcaagatgctcccaaaagctccttgatatcatacccttgcagctgaagaaaggt 1813

                                                                        
Query: 232  tagcagcagtataactcccgagttccaaaatgcatgtattgtaataggagctagaagatt 291
            || ||| | ||| ||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 1812 taacagtaatattactcccgagttccaaaatgcatgtattgtgataggagttagaagatt 1753

                             
Query: 292  gcgagtttgagcatatg 308
              | |||||||||||||
Sbjct: 1752 atgggtttgagcatatg 1736



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  105 bits (53), Expect = 9e-20
 Identities = 80/89 (89%)
 Strand = Plus / Minus

                                                                            
Query: 220      ctgaagaaaggttagcagcagtataactcccgagttccaaaatgcatgtattgtaatagg 279
                |||||||||||||| ||| | ||| ||||||||||||||||||||||||||||| |||||
Sbjct: 14629385 ctgaagaaaggttaacagtaatattactcccgagttccaaaatgcatgtattgtgatagg 14629326

                                             
Query: 280      agctagaagattgcgagtttgagcatatg 308
                || |||||||||  | |||||||||||||
Sbjct: 14629325 agttagaagattatgggtttgagcatatg 14629297



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                      
Query: 172      aagccttcaagatgcccccaatagctccttgatatcgnacccttgcaactgaag 225
                ||||||||||||||| ||||| ||||||||||||||  ||||||||| ||||||
Sbjct: 14629656 aagccttcaagatgctcccaaaagctccttgatatcatacccttgcagctgaag 14629603



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>dbj|AP005397.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0643D11
          Length = 137525

 Score =  105 bits (53), Expect = 9e-20
 Identities = 80/89 (89%)
 Strand = Plus / Minus

                                                                         
Query: 220   ctgaagaaaggttagcagcagtataactcccgagttccaaaatgcatgtattgtaatagg 279
             |||||||||||||| ||| | ||| ||||||||||||||||||||||||||||| |||||
Sbjct: 51052 ctgaagaaaggttaacagtaatattactcccgagttccaaaatgcatgtattgtgatagg 50993

                                          
Query: 280   agctagaagattgcgagtttgagcatatg 308
             || |||||||||  | |||||||||||||
Sbjct: 50992 agttagaagattatgggtttgagcatatg 50964



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                   
Query: 172   aagccttcaagatgcccccaatagctccttgatatcgnacccttgcaactgaag 225
             ||||||||||||||| ||||| ||||||||||||||  ||||||||| ||||||
Sbjct: 51323 aagccttcaagatgctcccaaaagctccttgatatcatacccttgcagctgaag 51270



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>ref|XM_482580.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 966

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                       
Query: 220 ctgaagaaaggttagcagcagtataactcccgagttccaaaatgcatgtattgtaatagg 279
           ||||||||  |||||||  | ||| ||||| |||||||| |  ||||||||  |||||||
Sbjct: 930 ctgaagaactgttagcaataatattactccagagttccacatagcatgtataataatagg 871

                                        
Query: 280 agctagaagattgcgagtttgagcatatg 308
           ||  |||||||||||||||||||||||||
Sbjct: 870 agtgagaagattgcgagtttgagcatatg 842



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                            
Query: 220      ctgaagaaaggttagcagcagtataactcccgagttccaaaatgcatgtattgtaatagg 279
                ||||||||  |||||||  | ||| ||||| |||||||| |  ||||||||  |||||||
Sbjct: 21203868 ctgaagaactgttagcaataatattactccagagttccacatagcatgtataataatagg 21203809

                                             
Query: 280      agctagaagattgcgagtttgagcatatg 308
                ||  |||||||||||||||||||||||||
Sbjct: 21203808 agtgagaagattgcgagtttgagcatatg 21203780



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                                 
Query: 175      ccttcaagatgcccccaatagctccttgatatcgnacccttgcaactga 223
                |||||||||||||  ||| ||||||||||||| | | || |||||||||
Sbjct: 21204232 ccttcaagatgccaacaacagctccttgatattgtatccctgcaactga 21204184



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>dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0016C11
          Length = 170723

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                         
Query: 220   ctgaagaaaggttagcagcagtataactcccgagttccaaaatgcatgtattgtaatagg 279
             ||||||||  |||||||  | ||| ||||| |||||||| |  ||||||||  |||||||
Sbjct: 30145 ctgaagaactgttagcaataatattactccagagttccacatagcatgtataataatagg 30086

                                          
Query: 280   agctagaagattgcgagtttgagcatatg 308
             ||  |||||||||||||||||||||||||
Sbjct: 30085 agtgagaagattgcgagtttgagcatatg 30057



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 175   ccttcaagatgcccccaatagctccttgatatcgnacccttgcaactga 223
             |||||||||||||  ||| ||||||||||||| | | || |||||||||
Sbjct: 30509 ccttcaagatgccaacaacagctccttgatattgtatccctgcaactga 30461



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>ref|NM_202094.1| Arabidopsis thaliana prenyl-dependent CAAX protease AT1G14270
            transcript variant AT1G14270.2 mRNA, complete cds
          Length = 1518

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 190  caatagctccttgatatcgnacccttgcaactgaagaaaggttagcagcagtataactcc 249
            |||||||||||| || ||  ||||||| | ||||||||| || || ||||  ||||||||
Sbjct: 1282 caatagctccttaatgtcatacccttggatctgaagaaaagtgagtagcaaaataactcc 1223

                     
Query: 250  cgagttcca 258
            |||||||||
Sbjct: 1222 cgagttcca 1214



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>ref|NM_101293.3| Arabidopsis thaliana prenyl-dependent CAAX protease AT1G14270
            transcript variant AT1G14270.1 mRNA, complete cds
          Length = 1325

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 190  caatagctccttgatatcgnacccttgcaactgaagaaaggttagcagcagtataactcc 249
            |||||||||||| || ||  ||||||| | ||||||||| || || ||||  ||||||||
Sbjct: 1089 caatagctccttaatgtcatacccttggatctgaagaaaagtgagtagcaaaataactcc 1030

                     
Query: 250  cgagttcca 258
            |||||||||
Sbjct: 1029 cgagttcca 1021



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>gb|AY091004.1| Arabidopsis thaliana unknown protein (At1g14270) mRNA, complete cds
          Length = 1290

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 190  caatagctccttgatatcgnacccttgcaactgaagaaaggttagcagcagtataactcc 249
            |||||||||||| || ||  ||||||| | ||||||||| || || ||||  ||||||||
Sbjct: 1037 caatagctccttaatgtcatacccttggatctgaagaaaagtgagtagcaaaataactcc 978

                     
Query: 250  cgagttcca 258
            |||||||||
Sbjct: 977  cgagttcca 969



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>emb|BX815142.1|CNS0ACWM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS37ZG03 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1478

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 190  caatagctccttgatatcgnacccttgcaactgaagaaaggttagcagcagtataactcc 249
            |||||||||||| || ||  ||||||| | ||||||||| || || ||||  ||||||||
Sbjct: 1282 caatagctccttaatgtcatacccttggatctgaagaaaagtgagtagcaaaataactcc 1223

                     
Query: 250  cgagttcca 258
            |||||||||
Sbjct: 1222 cgagttcca 1214



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>gb|AY087512.1| Arabidopsis thaliana clone 36233 mRNA, complete sequence
          Length = 1169

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 190  caatagctccttgatatcgnacccttgcaactgaagaaaggttagcagcagtataactcc 249
            |||||||||||| || ||  ||||||| | ||||||||| || || ||||  ||||||||
Sbjct: 1033 caatagctccttaatgtcatacccttggatctgaagaaaagtgagtagcaaaataactcc 974

                     
Query: 250  cgagttcca 258
            |||||||||
Sbjct: 973  cgagttcca 965



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>emb|AL116499.1|CNS01D8B Botrytis cinerea strain T4 cDNA library
          Length = 650

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 105 cttcttccaggtctttctgcgg 126
           ||||||||||||||||||||||
Sbjct: 595 cttcttccaggtctttctgcgg 574



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>emb|AL114521.1|CNS01BPD Botrytis cinerea strain T4 cDNA library
          Length = 660

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 105 cttcttccaggtctttctgcgg 126
           ||||||||||||||||||||||
Sbjct: 590 cttcttccaggtctttctgcgg 569



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>emb|AL111401.1|CNS019AP Botrytis cinerea strain T4 cDNA library
          Length = 720

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 105 cttcttccaggtctttctgcgg 126
           ||||||||||||||||||||||
Sbjct: 590 cttcttccaggtctttctgcgg 569



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>emb|BX813523.1|CNS0ADQW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB21ZH05 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1521

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 58/69 (84%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                        
Query: 190  caatagctccttgatatcgnacccttgcaactgaagaaaggttagcagcagtataactcc 249
            |||||||||||| || ||  ||||||| | ||||||||| || || ||||  ||||||||
Sbjct: 1431 caatagctccttaatgtcatacccttggatctgaagaaaagtgagtagcaa-ataactcc 1373

                     
Query: 250  cgagttcca 258
            |||||||||
Sbjct: 1372 cgagttcca 1364



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>emb|BX817801.1|CNS0ACKF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL42ZD07 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 1096

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 190  caatagctccttgatatcgnacccttgcaactgaagaaaggttagcagcagtataactcc 249
            |||||||||||| || ||  ||||||| | ||||||||| || || ||||  ||||||||
Sbjct: 1023 caatagctccttaatgtcatacccttggatctgaagaaaagtgagtagcaaaataactcc 964

                 
Query: 250  cgagt 254
            |||||
Sbjct: 963  cgagt 959



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>gb|AC121796.3| Mus musculus BAC clone RP23-423D22 from chromosome 18, complete
             sequence
          Length = 158469

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   taataggagctagaagattg 292
             ||||||||||||||||||||
Sbjct: 14613 taataggagctagaagattg 14632



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>gb|AC165065.2| Phakopsora pachyrhizi clone JGIAFNA-309D18, complete sequence
          Length = 36367

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 149  aagctgaaatcagatcggtt 168
            ||||||||||||||||||||
Sbjct: 6677 aagctgaaatcagatcggtt 6696



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>gb|AC117589.13| Mus musculus chromosome 18, clone RP23-222A8, complete sequence
          Length = 211309

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   taataggagctagaagattg 292
             ||||||||||||||||||||
Sbjct: 43405 taataggagctagaagattg 43386



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>gb|AC005035.2| Homo sapiens BAC clone RP11-353P23 from 2, complete sequence
          Length = 193708

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 118    tttctgcggaagttactcaaggat 141
              ||||| ||||||||||||||||||
Sbjct: 101694 tttctacggaagttactcaaggat 101671



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>gb|AC149598.2| Mus musculus BAC clone RP24-119N9 from 18, complete sequence
          Length = 161955

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   taataggagctagaagattg 292
             ||||||||||||||||||||
Sbjct: 82290 taataggagctagaagattg 82309


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,472,052
Number of Sequences: 3902068
Number of extensions: 2472052
Number of successful extensions: 42168
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 42117
Number of HSP's gapped (non-prelim): 51
length of query: 345
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 323
effective length of database: 17,147,199,772
effective search space: 5538545526356
effective search space used: 5538545526356
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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