Clone Name | rbasd23i23 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK069925.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036B16, full insert sequence Length = 2033 Score = 163 bits (82), Expect = 5e-37 Identities = 123/137 (89%) Strand = Plus / Minus Query: 172 aagccttcaagatgcccccaatagctccttgatatcgnacccttgcaactgaagaaaggt 231 ||||||||||||||| ||||| |||||||||||||| ||||||||| |||||||||||| Sbjct: 1872 aagccttcaagatgctcccaaaagctccttgatatcatacccttgcagctgaagaaaggt 1813 Query: 232 tagcagcagtataactcccgagttccaaaatgcatgtattgtaataggagctagaagatt 291 || ||| | ||| ||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct: 1812 taacagtaatattactcccgagttccaaaatgcatgtattgtgataggagttagaagatt 1753 Query: 292 gcgagtttgagcatatg 308 | ||||||||||||| Sbjct: 1752 atgggtttgagcatatg 1736
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 105 bits (53), Expect = 9e-20 Identities = 80/89 (89%) Strand = Plus / Minus Query: 220 ctgaagaaaggttagcagcagtataactcccgagttccaaaatgcatgtattgtaatagg 279 |||||||||||||| ||| | ||| ||||||||||||||||||||||||||||| ||||| Sbjct: 14629385 ctgaagaaaggttaacagtaatattactcccgagttccaaaatgcatgtattgtgatagg 14629326 Query: 280 agctagaagattgcgagtttgagcatatg 308 || ||||||||| | ||||||||||||| Sbjct: 14629325 agttagaagattatgggtttgagcatatg 14629297 Score = 69.9 bits (35), Expect = 5e-09 Identities = 49/54 (90%) Strand = Plus / Minus Query: 172 aagccttcaagatgcccccaatagctccttgatatcgnacccttgcaactgaag 225 ||||||||||||||| ||||| |||||||||||||| ||||||||| |||||| Sbjct: 14629656 aagccttcaagatgctcccaaaagctccttgatatcatacccttgcagctgaag 14629603
>dbj|AP005397.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0643D11 Length = 137525 Score = 105 bits (53), Expect = 9e-20 Identities = 80/89 (89%) Strand = Plus / Minus Query: 220 ctgaagaaaggttagcagcagtataactcccgagttccaaaatgcatgtattgtaatagg 279 |||||||||||||| ||| | ||| ||||||||||||||||||||||||||||| ||||| Sbjct: 51052 ctgaagaaaggttaacagtaatattactcccgagttccaaaatgcatgtattgtgatagg 50993 Query: 280 agctagaagattgcgagtttgagcatatg 308 || ||||||||| | ||||||||||||| Sbjct: 50992 agttagaagattatgggtttgagcatatg 50964 Score = 69.9 bits (35), Expect = 5e-09 Identities = 49/54 (90%) Strand = Plus / Minus Query: 172 aagccttcaagatgcccccaatagctccttgatatcgnacccttgcaactgaag 225 ||||||||||||||| ||||| |||||||||||||| ||||||||| |||||| Sbjct: 51323 aagccttcaagatgctcccaaaagctccttgatatcatacccttgcagctgaag 51270
>ref|XM_482580.1| Oryza sativa (japonica cultivar-group), mRNA Length = 966 Score = 65.9 bits (33), Expect = 8e-08 Identities = 75/89 (84%) Strand = Plus / Minus Query: 220 ctgaagaaaggttagcagcagtataactcccgagttccaaaatgcatgtattgtaatagg 279 |||||||| ||||||| | ||| ||||| |||||||| | |||||||| ||||||| Sbjct: 930 ctgaagaactgttagcaataatattactccagagttccacatagcatgtataataatagg 871 Query: 280 agctagaagattgcgagtttgagcatatg 308 || ||||||||||||||||||||||||| Sbjct: 870 agtgagaagattgcgagtttgagcatatg 842
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 65.9 bits (33), Expect = 8e-08 Identities = 75/89 (84%) Strand = Plus / Minus Query: 220 ctgaagaaaggttagcagcagtataactcccgagttccaaaatgcatgtattgtaatagg 279 |||||||| ||||||| | ||| ||||| |||||||| | |||||||| ||||||| Sbjct: 21203868 ctgaagaactgttagcaataatattactccagagttccacatagcatgtataataatagg 21203809 Query: 280 agctagaagattgcgagtttgagcatatg 308 || ||||||||||||||||||||||||| Sbjct: 21203808 agtgagaagattgcgagtttgagcatatg 21203780 Score = 44.1 bits (22), Expect = 0.29 Identities = 42/49 (85%) Strand = Plus / Minus Query: 175 ccttcaagatgcccccaatagctccttgatatcgnacccttgcaactga 223 ||||||||||||| ||| ||||||||||||| | | || ||||||||| Sbjct: 21204232 ccttcaagatgccaacaacagctccttgatattgtatccctgcaactga 21204184
>dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11 Length = 170723 Score = 65.9 bits (33), Expect = 8e-08 Identities = 75/89 (84%) Strand = Plus / Minus Query: 220 ctgaagaaaggttagcagcagtataactcccgagttccaaaatgcatgtattgtaatagg 279 |||||||| ||||||| | ||| ||||| |||||||| | |||||||| ||||||| Sbjct: 30145 ctgaagaactgttagcaataatattactccagagttccacatagcatgtataataatagg 30086 Query: 280 agctagaagattgcgagtttgagcatatg 308 || ||||||||||||||||||||||||| Sbjct: 30085 agtgagaagattgcgagtttgagcatatg 30057 Score = 44.1 bits (22), Expect = 0.29 Identities = 42/49 (85%) Strand = Plus / Minus Query: 175 ccttcaagatgcccccaatagctccttgatatcgnacccttgcaactga 223 ||||||||||||| ||| ||||||||||||| | | || ||||||||| Sbjct: 30509 ccttcaagatgccaacaacagctccttgatattgtatccctgcaactga 30461
>ref|NM_202094.1| Arabidopsis thaliana prenyl-dependent CAAX protease AT1G14270 transcript variant AT1G14270.2 mRNA, complete cds Length = 1518 Score = 52.0 bits (26), Expect = 0.001 Identities = 58/69 (84%) Strand = Plus / Minus Query: 190 caatagctccttgatatcgnacccttgcaactgaagaaaggttagcagcagtataactcc 249 |||||||||||| || || ||||||| | ||||||||| || || |||| |||||||| Sbjct: 1282 caatagctccttaatgtcatacccttggatctgaagaaaagtgagtagcaaaataactcc 1223 Query: 250 cgagttcca 258 ||||||||| Sbjct: 1222 cgagttcca 1214
>ref|NM_101293.3| Arabidopsis thaliana prenyl-dependent CAAX protease AT1G14270 transcript variant AT1G14270.1 mRNA, complete cds Length = 1325 Score = 52.0 bits (26), Expect = 0.001 Identities = 58/69 (84%) Strand = Plus / Minus Query: 190 caatagctccttgatatcgnacccttgcaactgaagaaaggttagcagcagtataactcc 249 |||||||||||| || || ||||||| | ||||||||| || || |||| |||||||| Sbjct: 1089 caatagctccttaatgtcatacccttggatctgaagaaaagtgagtagcaaaataactcc 1030 Query: 250 cgagttcca 258 ||||||||| Sbjct: 1029 cgagttcca 1021
>gb|AY091004.1| Arabidopsis thaliana unknown protein (At1g14270) mRNA, complete cds Length = 1290 Score = 52.0 bits (26), Expect = 0.001 Identities = 58/69 (84%) Strand = Plus / Minus Query: 190 caatagctccttgatatcgnacccttgcaactgaagaaaggttagcagcagtataactcc 249 |||||||||||| || || ||||||| | ||||||||| || || |||| |||||||| Sbjct: 1037 caatagctccttaatgtcatacccttggatctgaagaaaagtgagtagcaaaataactcc 978 Query: 250 cgagttcca 258 ||||||||| Sbjct: 977 cgagttcca 969
>emb|BX815142.1|CNS0ACWM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS37ZG03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1478 Score = 52.0 bits (26), Expect = 0.001 Identities = 58/69 (84%) Strand = Plus / Minus Query: 190 caatagctccttgatatcgnacccttgcaactgaagaaaggttagcagcagtataactcc 249 |||||||||||| || || ||||||| | ||||||||| || || |||| |||||||| Sbjct: 1282 caatagctccttaatgtcatacccttggatctgaagaaaagtgagtagcaaaataactcc 1223 Query: 250 cgagttcca 258 ||||||||| Sbjct: 1222 cgagttcca 1214
>gb|AY087512.1| Arabidopsis thaliana clone 36233 mRNA, complete sequence Length = 1169 Score = 52.0 bits (26), Expect = 0.001 Identities = 58/69 (84%) Strand = Plus / Minus Query: 190 caatagctccttgatatcgnacccttgcaactgaagaaaggttagcagcagtataactcc 249 |||||||||||| || || ||||||| | ||||||||| || || |||| |||||||| Sbjct: 1033 caatagctccttaatgtcatacccttggatctgaagaaaagtgagtagcaaaataactcc 974 Query: 250 cgagttcca 258 ||||||||| Sbjct: 973 cgagttcca 965
>emb|AL116499.1|CNS01D8B Botrytis cinerea strain T4 cDNA library Length = 650 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 105 cttcttccaggtctttctgcgg 126 |||||||||||||||||||||| Sbjct: 595 cttcttccaggtctttctgcgg 574
>emb|AL114521.1|CNS01BPD Botrytis cinerea strain T4 cDNA library Length = 660 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 105 cttcttccaggtctttctgcgg 126 |||||||||||||||||||||| Sbjct: 590 cttcttccaggtctttctgcgg 569
>emb|AL111401.1|CNS019AP Botrytis cinerea strain T4 cDNA library Length = 720 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 105 cttcttccaggtctttctgcgg 126 |||||||||||||||||||||| Sbjct: 590 cttcttccaggtctttctgcgg 569
>emb|BX813523.1|CNS0ADQW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB21ZH05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1521 Score = 44.1 bits (22), Expect = 0.29 Identities = 58/69 (84%), Gaps = 1/69 (1%) Strand = Plus / Minus Query: 190 caatagctccttgatatcgnacccttgcaactgaagaaaggttagcagcagtataactcc 249 |||||||||||| || || ||||||| | ||||||||| || || |||| |||||||| Sbjct: 1431 caatagctccttaatgtcatacccttggatctgaagaaaagtgagtagcaa-ataactcc 1373 Query: 250 cgagttcca 258 ||||||||| Sbjct: 1372 cgagttcca 1364
>emb|BX817801.1|CNS0ACKF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL42ZD07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1096 Score = 44.1 bits (22), Expect = 0.29 Identities = 54/65 (83%) Strand = Plus / Minus Query: 190 caatagctccttgatatcgnacccttgcaactgaagaaaggttagcagcagtataactcc 249 |||||||||||| || || ||||||| | ||||||||| || || |||| |||||||| Sbjct: 1023 caatagctccttaatgtcatacccttggatctgaagaaaagtgagtagcaaaataactcc 964 Query: 250 cgagt 254 ||||| Sbjct: 963 cgagt 959
>gb|AC121796.3| Mus musculus BAC clone RP23-423D22 from chromosome 18, complete sequence Length = 158469 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 taataggagctagaagattg 292 |||||||||||||||||||| Sbjct: 14613 taataggagctagaagattg 14632
>gb|AC165065.2| Phakopsora pachyrhizi clone JGIAFNA-309D18, complete sequence Length = 36367 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 aagctgaaatcagatcggtt 168 |||||||||||||||||||| Sbjct: 6677 aagctgaaatcagatcggtt 6696
>gb|AC117589.13| Mus musculus chromosome 18, clone RP23-222A8, complete sequence Length = 211309 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 taataggagctagaagattg 292 |||||||||||||||||||| Sbjct: 43405 taataggagctagaagattg 43386
>gb|AC005035.2| Homo sapiens BAC clone RP11-353P23 from 2, complete sequence Length = 193708 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 tttctgcggaagttactcaaggat 141 ||||| |||||||||||||||||| Sbjct: 101694 tttctacggaagttactcaaggat 101671
>gb|AC149598.2| Mus musculus BAC clone RP24-119N9 from 18, complete sequence Length = 161955 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 taataggagctagaagattg 292 |||||||||||||||||||| Sbjct: 82290 taataggagctagaagattg 82309 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,472,052 Number of Sequences: 3902068 Number of extensions: 2472052 Number of successful extensions: 42168 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 42117 Number of HSP's gapped (non-prelim): 51 length of query: 345 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 323 effective length of database: 17,147,199,772 effective search space: 5538545526356 effective search space used: 5538545526356 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)