ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23i22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_471066.1| Oryza sativa (japonica cultivar-group), predic... 337 2e-89
2dbj|AK069299.1| Oryza sativa (japonica cultivar-group) cDNA clon... 337 2e-89
3gb|AY103738.1| Zea mays PCO146589 mRNA sequence 289 5e-75
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 281 1e-72
5emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4,... 281 1e-72
6gb|BT018932.1| Zea mays clone Contig65.F mRNA sequence 240 4e-60
7gb|BT012988.1| Lycopersicon esculentum clone 114208R, mRNA sequence 84 6e-13
8emb|BX572096.1| Prochlorococcus marinus MIT9313 complete genome;... 50 0.008
9ref|NM_099991.2| Arabidopsis thaliana PDH-E1 ALPHA (PYRUVATE DEH... 44 0.48
10gb|U80185.1|ATU80185 Arabidopsis thaliana pyruvate dehydrogenase... 44 0.48
11gb|AY063724.1| Arabidopsis thaliana At1g01090/T25K16_8 mRNA, com... 44 0.48
12gb|AY052721.1| Arabidopsis thaliana At1g01090/T25K16_8 mRNA, com... 44 0.48
13emb|BX815365.1|CNS0ACRU Arabidopsis thaliana Full-length cDNA Co... 44 0.48
14emb|BX815342.1|CNS0ACRT Arabidopsis thaliana Full-length cDNA Co... 44 0.48
15gb|AC007323.5|AC007323 Genomic sequence for Arabidopsis thaliana... 44 0.48
16dbj|AP002004.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 44 0.48
17gb|AC019129.8| Homo sapiens BAC clone RP11-559M23 from 2, comple... 42 1.9
18emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4,... 42 1.9
19emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4,... 42 1.9
20gb|AC022062.10| Mus musculus chromosome 5, clone RP23-57P23, com... 40 7.5
21ref|XM_796706.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.5
22ref|XM_774836.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.5
23ref|XM_792960.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.5
24gb|AC150683.3| Mus musculus BAC clone RP23-435E16 from chromosom... 40 7.5
25dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 7.5
26gb|AF204951.2|AF204951 Ectocarpus siliculosus virus, complete ge... 40 7.5
27gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplas... 40 7.5
28emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 7.5

>ref|XM_471066.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1278

 Score =  337 bits (170), Expect = 2e-89
 Identities = 287/325 (88%), Gaps = 1/325 (0%)
 Strand = Plus / Minus

                                                                        
Query: 227  agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 286
            ||||||| ||||||||||||||||||  ||| ||||| |||| |||||| ||||||||||
Sbjct: 1276 agacttgggccgtgccttgcgtgaacaagggatcctcacaccggtacttcccgtcagggc 1217

                                                                        
Query: 287  cgatgccaaagcccttgggatcggcaaacacgttctccagcagctggctccgtgggggga 346
            | || ||||||||||||||||| |  |||||||| ||||| ||||||||||| || ||||
Sbjct: 1216 caattccaaagcccttgggatctgagaacacgttttccagaagctggctccggggaggga 1157

                                                                        
Query: 347  gcgggctcgcgtcggcgaactccaccgcctcttcnacgacgtcgtcaatcttcttctcga 406
            ||||||| ||||| ||||||||||| |||||||| || || || || ||||| |||||||
Sbjct: 1156 gcgggcttgcgtcagcgaactccacggcctcttcaacaacatcatcgatctttttctcga 1097

                                                                        
Query: 407  tgctcttcagctcggcttcagacgcgaggttctgctcgatgatgtacttcttcagggatg 466
            ||||||||||||||| |||||  || |||||||| ||||||||||||||||||| || ||
Sbjct: 1096 tgctcttcagctcggattcagttgcaaggttctgttcgatgatgtacttcttcaaggctg 1037

                                                                        
Query: 467  tgatggggtcccttgcggcgtagtgagatttctcatcaggcctcctgagttcatctggat 526
            | |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 1036 taatggggtcccttgcggcgtaatgagatttctcatcaggtctcctgagctcatctggat 977

                                     
Query: 527  cagcaagagagtggccctctgaacc 551
            |||||||||| | ||||||||||||
Sbjct: 976  cagcaagagaat-gccctctgaacc 953



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>dbj|AK069299.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012M21, full
            insert sequence
          Length = 1736

 Score =  337 bits (170), Expect = 2e-89
 Identities = 287/325 (88%), Gaps = 1/325 (0%)
 Strand = Plus / Minus

                                                                        
Query: 227  agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 286
            ||||||| ||||||||||||||||||  ||| ||||| |||| |||||| ||||||||||
Sbjct: 1416 agacttgggccgtgccttgcgtgaacaagggatcctcacaccggtacttcccgtcagggc 1357

                                                                        
Query: 287  cgatgccaaagcccttgggatcggcaaacacgttctccagcagctggctccgtgggggga 346
            | || ||||||||||||||||| |  |||||||| ||||| ||||||||||| || ||||
Sbjct: 1356 caattccaaagcccttgggatctgagaacacgttttccagaagctggctccggggaggga 1297

                                                                        
Query: 347  gcgggctcgcgtcggcgaactccaccgcctcttcnacgacgtcgtcaatcttcttctcga 406
            ||||||| ||||| ||||||||||| |||||||| || || || || ||||| |||||||
Sbjct: 1296 gcgggcttgcgtcagcgaactccacggcctcttcaacaacatcatcgatctttttctcga 1237

                                                                        
Query: 407  tgctcttcagctcggcttcagacgcgaggttctgctcgatgatgtacttcttcagggatg 466
            ||||||||||||||| |||||  || |||||||| ||||||||||||||||||| || ||
Sbjct: 1236 tgctcttcagctcggattcagttgcaaggttctgttcgatgatgtacttcttcaaggctg 1177

                                                                        
Query: 467  tgatggggtcccttgcggcgtagtgagatttctcatcaggcctcctgagttcatctggat 526
            | |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 1176 taatggggtcccttgcggcgtaatgagatttctcatcaggtctcctgagctcatctggat 1117

                                     
Query: 527  cagcaagagagtggccctctgaacc 551
            |||||||||| | ||||||||||||
Sbjct: 1116 cagcaagagaat-gccctctgaacc 1093



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>gb|AY103738.1| Zea mays PCO146589 mRNA sequence
          Length = 1787

 Score =  289 bits (146), Expect = 5e-75
 Identities = 274/317 (86%)
 Strand = Plus / Minus

                                                                        
Query: 223  ccttagacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtca 282
            ||||| ||||| || |||||||| ||||||||||| ||||||||||||||||| || || 
Sbjct: 1538 ccttaaacttgggcggtgccttgggtgaacttgggatcctcgcacctgtacttaccatcg 1479

                                                                        
Query: 283  gggccgatgccaaagcccttgggatcggcaaacacgttctccagcagctggctccgtggg 342
            |||||||| |||||||| ||||| ||||||||||||||||||| ||||||||| || || 
Sbjct: 1478 gggccgataccaaagcctttggggtcggcaaacacgttctccaacagctggctgcgcggc 1419

                                                                        
Query: 343  gggagcgggctcgcgtcggcgaactccaccgcctcttcnacgacgtcgtcaatcttcttc 402
            ||  ||||||||||||| || ||||| || ||||| || ||||| ||||| |||||||||
Sbjct: 1418 ggatgcgggctcgcgtcagcaaactcgacagcctcctcaacgacatcgtcgatcttcttc 1359

                                                                        
Query: 403  tcgatgctcttcagctcggcttcagacgcgaggttctgctcgatgatgtacttcttcagg 462
            ||||||||||||||||||| ||| |  |||||||||||||| |||||||||||||||| |
Sbjct: 1358 tcgatgctcttcagctcggattcggttgcgaggttctgctctatgatgtacttcttcaag 1299

                                                                        
Query: 463  gatgtgatggggtcccttgcggcgtagtgagatttctcatcaggcctcctgagttcatct 522
            |  ||||| |  ||||||||||||||||| | ||||||||||||| ||||||| ||||||
Sbjct: 1298 gccgtgatagaatcccttgcggcgtagtgtgttttctcatcaggcttcctgagctcatct 1239

                             
Query: 523  ggatcagcaagagagtg 539
            || || ||||| |||||
Sbjct: 1238 gggtctgcaagggagtg 1222



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  281 bits (142), Expect = 1e-72
 Identities = 243/277 (87%)
 Strand = Plus / Minus

                                                                           
Query: 227     agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 286
               ||||||| ||||||||||||||||||  ||| ||||| |||| |||||| ||||||||||
Sbjct: 1126401 agacttgggccgtgccttgcgtgaacaagggatcctcacaccggtacttcccgtcagggc 1126342

                                                                           
Query: 287     cgatgccaaagcccttgggatcggcaaacacgttctccagcagctggctccgtgggggga 346
               | || ||||||||||||||||| |  |||||||| ||||| ||||||||||| || ||||
Sbjct: 1126341 caattccaaagcccttgggatctgagaacacgttttccagaagctggctccggggaggga 1126282

                                                                           
Query: 347     gcgggctcgcgtcggcgaactccaccgcctcttcnacgacgtcgtcaatcttcttctcga 406
               ||||||| ||||| ||||||||||| |||||||| || || || || ||||| |||||||
Sbjct: 1126281 gcgggcttgcgtcagcgaactccacggcctcttcaacaacatcatcgatctttttctcga 1126222

                                                                           
Query: 407     tgctcttcagctcggcttcagacgcgaggttctgctcgatgatgtacttcttcagggatg 466
               ||||||||||||||| |||||  || |||||||| ||||||||||||||||||| || ||
Sbjct: 1126221 tgctcttcagctcggattcagttgcaaggttctgttcgatgatgtacttcttcaaggctg 1126162

                                                    
Query: 467     tgatggggtcccttgcggcgtagtgagatttctcatc 503
               | |||||||||||||||||||| ||||||||||||||
Sbjct: 1126161 taatggggtcccttgcggcgtaatgagatttctcatc 1126125



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 45/49 (91%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                                
Query: 503     caggcctcctgagttcatctggatcagcaagagagtggccctctgaacc 551
               |||| |||||||| |||||||||||||||||||| | ||||||||||||
Sbjct: 1124997 caggtctcctgagctcatctggatcagcaagagaat-gccctctgaacc 1124950



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 27       catttcttgggtaaaaaactg 47
                |||||||||||||||||||||
Sbjct: 30276636 catttcttgggtaaaaaactg 30276656



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>emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020P07,
             complete sequence
          Length = 167895

 Score =  281 bits (142), Expect = 1e-72
 Identities = 243/277 (87%)
 Strand = Plus / Minus

                                                                         
Query: 227   agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 286
             ||||||| ||||||||||||||||||  ||| ||||| |||| |||||| ||||||||||
Sbjct: 68783 agacttgggccgtgccttgcgtgaacaagggatcctcacaccggtacttcccgtcagggc 68724

                                                                         
Query: 287   cgatgccaaagcccttgggatcggcaaacacgttctccagcagctggctccgtgggggga 346
             | || ||||||||||||||||| |  |||||||| ||||| ||||||||||| || ||||
Sbjct: 68723 caattccaaagcccttgggatctgagaacacgttttccagaagctggctccggggaggga 68664

                                                                         
Query: 347   gcgggctcgcgtcggcgaactccaccgcctcttcnacgacgtcgtcaatcttcttctcga 406
             ||||||| ||||| ||||||||||| |||||||| || || || || ||||| |||||||
Sbjct: 68663 gcgggcttgcgtcagcgaactccacggcctcttcaacaacatcatcgatctttttctcga 68604

                                                                         
Query: 407   tgctcttcagctcggcttcagacgcgaggttctgctcgatgatgtacttcttcagggatg 466
             ||||||||||||||| |||||  || |||||||| ||||||||||||||||||| || ||
Sbjct: 68603 tgctcttcagctcggattcagttgcaaggttctgttcgatgatgtacttcttcaaggctg 68544

                                                  
Query: 467   tgatggggtcccttgcggcgtagtgagatttctcatc 503
             | |||||||||||||||||||| ||||||||||||||
Sbjct: 68543 taatggggtcccttgcggcgtaatgagatttctcatc 68507



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 45/49 (91%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                              
Query: 503   caggcctcctgagttcatctggatcagcaagagagtggccctctgaacc 551
             |||| |||||||| |||||||||||||||||||| | ||||||||||||
Sbjct: 67379 caggtctcctgagctcatctggatcagcaagagaat-gccctctgaacc 67332



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>gb|BT018932.1| Zea mays clone Contig65.F mRNA sequence
          Length = 851

 Score =  240 bits (121), Expect = 4e-60
 Identities = 255/300 (85%)
 Strand = Plus / Minus

                                                                       
Query: 240 gccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggccgatgccaaagcc 299
           |||||| | ||||||||| ||||| ||||||||||| || || ||||| || ||||||||
Sbjct: 599 gccttgggggaacttgggatcctcccacctgtacttaccatcggggccaataccaaagcc 540

                                                                       
Query: 300 cttgggatcggcaaacacgttctccagcagctggctccgtggggggagcgggctcgcgtc 359
            ||||| ||||||||||||||||||| ||||||||| || ||||| || |||||||||||
Sbjct: 539 tttggggtcggcaaacacgttctccaacagctggctgcgcgggggaagggggctcgcgtc 480

                                                                       
Query: 360 ggcgaactccaccgcctcttcnacgacgtcgtcaatcttcttctcgatgctcttcagctc 419
             | ||||| || ||||| || || || |||||||| |||||||||||||||||||||||
Sbjct: 479 aacaaactcgacagcctcctcaacaacatcgtcaattttcttctcgatgctcttcagctc 420

                                                                       
Query: 420 ggcttcagacgcgaggttctgctcgatgatgtacttcttcagggatgtgatggggtccct 479
           || ||| |  |||||||||||||| ||||||||||| |||| ||  ||||| |  |||||
Sbjct: 419 ggattcggttgcgaggttctgctctatgatgtactttttcaaggccgtgatagaatccct 360

                                                                       
Query: 480 tgcggcgtagtgagatttctcatcaggcctcctgagttcatctggatcagcaagagagtg 539
           |||||||||||| | ||||||||||||| ||||||| |||||||| || ||||| |||||
Sbjct: 359 tgcggcgtagtgtgttttctcatcaggcttcctgagctcatctgggtctgcaagggagtg 300



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>gb|BT012988.1| Lycopersicon esculentum clone 114208R, mRNA sequence
          Length = 1692

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 84/98 (85%)
 Strand = Plus / Minus

                                                                        
Query: 238  gtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggccgatgccaaag 297
            |||||||  ||||||||||| || || || |||||| | || ||||| || |||||||||
Sbjct: 1423 gtgccttcggtgaacttgggatcttcacatctgtaccttccatcaggcccaatgccaaag 1364

                                                  
Query: 298  cccttgggatcggcaaacacgttctccagcagctggct 335
            ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 1363 ccctttggatcagcaaacacgttctcgagcagctggct 1326



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>emb|BX572096.1| Prochlorococcus marinus MIT9313 complete genome; segment 2/7
          Length = 349323

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 514   agttcatctggatcagcaagagagtggcc 542
             ||||||||||||||||||||||| |||||
Sbjct: 45964 agttcatctggatcagcaagagaatggcc 45992



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>ref|NM_099991.2| Arabidopsis thaliana PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA);
            oxidoreductase, acting on the aldehyde or oxo group of
            donors, disulfide as acc> AT1G01090 (PDH-E1 ALPHA) mRNA,
            complete cds
          Length = 1620

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 82/102 (80%)
 Strand = Plus / Minus

                                                                        
Query: 227  agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 286
            ||||||| || |||||||  || |||||||||||||| || ||||||   || ||||| |
Sbjct: 1398 agacttgagctgtgccttcggtaaacttggggtcctcacatctgtaccgtccatcaggtc 1339

                                                      
Query: 287  cgatgccaaagcccttgggatcggcaaacacgttctccagca 328
            | || ||||| || || ||||| |||||||| ||||| ||||
Sbjct: 1338 caattccaaatccttttggatcagcaaacacattctctagca 1297



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>gb|U80185.1|ATU80185 Arabidopsis thaliana pyruvate dehydrogenase E1 alpha subunit mRNA,
            nuclear gene encoding plastid protein, complete cds
          Length = 1541

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 82/102 (80%)
 Strand = Plus / Minus

                                                                        
Query: 227  agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 286
            ||||||| || |||||||  || |||||||||||||| || ||||||   || ||||| |
Sbjct: 1402 agacttgagctgtgccttcggtaaacttggggtcctcacatctgtaccgtccatcaggtc 1343

                                                      
Query: 287  cgatgccaaagcccttgggatcggcaaacacgttctccagca 328
            | || ||||| || || ||||| |||||||| ||||| ||||
Sbjct: 1342 caattccaaatccttttggatcagcaaacacattctctagca 1301



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>gb|AY063724.1| Arabidopsis thaliana At1g01090/T25K16_8 mRNA, complete cds
          Length = 1287

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 82/102 (80%)
 Strand = Plus / Minus

                                                                        
Query: 227  agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 286
            ||||||| || |||||||  || |||||||||||||| || ||||||   || ||||| |
Sbjct: 1285 agacttgagctgtgccttcggtaaacttggggtcctcacatctgtaccgtccatcaggtc 1226

                                                      
Query: 287  cgatgccaaagcccttgggatcggcaaacacgttctccagca 328
            | || ||||| || || ||||| |||||||| ||||| ||||
Sbjct: 1225 caattccaaatccttttggatcagcaaacacattctctagca 1184



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>gb|AY052721.1| Arabidopsis thaliana At1g01090/T25K16_8 mRNA, complete cds
          Length = 1610

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 82/102 (80%)
 Strand = Plus / Minus

                                                                        
Query: 227  agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 286
            ||||||| || |||||||  || |||||||||||||| || ||||||   || ||||| |
Sbjct: 1400 agacttgagctgtgccttcggtaaacttggggtcctcacatctgtaccgtccatcaggtc 1341

                                                      
Query: 287  cgatgccaaagcccttgggatcggcaaacacgttctccagca 328
            | || ||||| || || ||||| |||||||| ||||| ||||
Sbjct: 1340 caattccaaatccttttggatcagcaaacacattctctagca 1299



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>emb|BX815365.1|CNS0ACRU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS55ZC08 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1441

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 82/102 (80%)
 Strand = Plus / Minus

                                                                        
Query: 227  agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 286
            ||||||| || |||||||  || |||||||||||||| || ||||||   || ||||| |
Sbjct: 1368 agacttgagctgtgccttcggtaaacttggggtcctcacatctgtaccgtccatcaggtc 1309

                                                      
Query: 287  cgatgccaaagcccttgggatcggcaaacacgttctccagca 328
            | || ||||| || || ||||| |||||||| ||||| ||||
Sbjct: 1308 caattccaaatccttttggatcagcaaacacattctctagca 1267



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>emb|BX815342.1|CNS0ACRT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS53ZG06 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1557

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 82/102 (80%)
 Strand = Plus / Minus

                                                                        
Query: 227  agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 286
            ||||||| || |||||||  || |||||||||||||| || ||||||   || ||||| |
Sbjct: 1391 agacttgagctgtgccttcggtaaacttggggtcctcacatctgtaccgtccatcaggtc 1332

                                                      
Query: 287  cgatgccaaagcccttgggatcggcaaacacgttctccagca 328
            | || ||||| || || ||||| |||||||| ||||| ||||
Sbjct: 1331 caattccaaatccttttggatcagcaaacacattctctagca 1290



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>gb|AC007323.5|AC007323 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I,
             complete sequence
          Length = 86436

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 82/102 (80%)
 Strand = Plus / Plus

                                                                         
Query: 227   agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 286
             ||||||| || |||||||  || |||||||||||||| || ||||||   || ||||| |
Sbjct: 47409 agacttgagctgtgccttcggtaaacttggggtcctcacatctgtaccgtccatcaggtc 47468

                                                       
Query: 287   cgatgccaaagcccttgggatcggcaaacacgttctccagca 328
             | || ||||| || || ||||| |||||||| ||||| ||||
Sbjct: 47469 caattccaaatccttttggatcagcaaacacattctctagca 47510



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>dbj|AP002004.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-693N9, complete
              sequence
          Length = 172081

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 87     attacacagtgatatatgacct 108
              ||||||||||||||||||||||
Sbjct: 148689 attacacagtgatatatgacct 148710



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>gb|AC019129.8| Homo sapiens BAC clone RP11-559M23 from 2, complete sequence
          Length = 172611

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 79     agcaatgaattacacagtgat 99
              |||||||||||||||||||||
Sbjct: 121429 agcaatgaattacacagtgat 121409



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>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12,
              complete sequence
          Length = 186142

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 27     catttcttgggtaaaaaactg 47
              |||||||||||||||||||||
Sbjct: 172949 catttcttgggtaaaaaactg 172969



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>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12,
             complete sequence
          Length = 160989

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    catttcttgggtaaaaaactg 47
             |||||||||||||||||||||
Sbjct: 26532 catttcttgggtaaaaaactg 26552



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>gb|AC022062.10| Mus musculus chromosome 5, clone RP23-57P23, complete sequence
          Length = 235363

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     tgaactggagaacatttctt 34
              ||||||||||||||||||||
Sbjct: 123197 tgaactggagaacatttctt 123178



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>ref|XM_796706.1| PREDICTED: Strongylocentrotus purpuratus similar to CG3058-PA,
           transcript variant 2 (LOC578262), mRNA
          Length = 1589

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 cgatgatgtacttcttcagg 462
           ||||||||||||||||||||
Sbjct: 551 cgatgatgtacttcttcagg 570



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>ref|XM_774836.1| PREDICTED: Strongylocentrotus purpuratus similar to CG3058-PA,
           transcript variant 1 (LOC578262), mRNA
          Length = 1634

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 cgatgatgtacttcttcagg 462
           ||||||||||||||||||||
Sbjct: 596 cgatgatgtacttcttcagg 615



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>ref|XM_792960.1| PREDICTED: Strongylocentrotus purpuratus similar to CG3058-PA
           (LOC593488), mRNA
          Length = 845

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 cgatgatgtacttcttcagg 462
           ||||||||||||||||||||
Sbjct: 609 cgatgatgtacttcttcagg 628



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>gb|AC150683.3| Mus musculus BAC clone RP23-435E16 from chromosome 7, complete sequence
          Length = 198646

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 512   tgagttcatctggatcagca 531
             ||||||||||||||||||||
Sbjct: 32995 tgagttcatctggatcagca 33014



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 356    cgtcggcgaactccaccgcc 375
              ||||||||||||||||||||
Sbjct: 241332 cgtcggcgaactccaccgcc 241313



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>gb|AF204951.2|AF204951 Ectocarpus siliculosus virus, complete genome
          Length = 335593

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    ttgggatcggcaaacacgtt 320
              ||||||||||||||||||||
Sbjct: 178294 ttgggatcggcaaacacgtt 178313



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>gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplast, complete genome
          Length = 164921

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 511    ctgagttcatctggatcagc 530
              ||||||||||||||||||||
Sbjct: 152337 ctgagttcatctggatcagc 152356



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    cgttctccagcagctggctc 336
              ||||||||||||||||||||
Sbjct: 400745 cgttctccagcagctggctc 400764


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,624,074
Number of Sequences: 3902068
Number of extensions: 4624074
Number of successful extensions: 82912
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82761
Number of HSP's gapped (non-prelim): 151
length of query: 554
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 531
effective length of database: 17,143,297,704
effective search space: 9103091080824
effective search space used: 9103091080824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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