ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23i21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_471066.1| Oryza sativa (japonica cultivar-group), predic... 343 4e-91
2dbj|AK069299.1| Oryza sativa (japonica cultivar-group) cDNA clon... 343 4e-91
3gb|AY103738.1| Zea mays PCO146589 mRNA sequence 285 8e-74
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 281 1e-72
5emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4,... 281 1e-72
6gb|BT018932.1| Zea mays clone Contig65.F mRNA sequence 236 6e-59
7gb|BT012988.1| Lycopersicon esculentum clone 114208R, mRNA sequence 84 6e-13
8emb|BX572096.1| Prochlorococcus marinus MIT9313 complete genome;... 50 0.008
9ref|NM_099991.2| Arabidopsis thaliana PDH-E1 ALPHA (PYRUVATE DEH... 44 0.49
10gb|U80185.1|ATU80185 Arabidopsis thaliana pyruvate dehydrogenase... 44 0.49
11gb|AY063724.1| Arabidopsis thaliana At1g01090/T25K16_8 mRNA, com... 44 0.49
12gb|AY052721.1| Arabidopsis thaliana At1g01090/T25K16_8 mRNA, com... 44 0.49
13emb|BX815365.1|CNS0ACRU Arabidopsis thaliana Full-length cDNA Co... 44 0.49
14emb|BX815342.1|CNS0ACRT Arabidopsis thaliana Full-length cDNA Co... 44 0.49
15gb|AC007323.5|AC007323 Genomic sequence for Arabidopsis thaliana... 44 0.49
16dbj|AP002004.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 44 0.49
17gb|AE009830.1|AE009830 Pyrobaculum aerophilum strain IM2 section... 42 1.9
18gb|AC019129.8| Homo sapiens BAC clone RP11-559M23 from 2, comple... 42 1.9
19emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4,... 42 1.9
20emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4,... 42 1.9
21gb|AC167967.6| Culex pipiens quinquefasciatus, clone Culex pipie... 42 1.9
22gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 7.7
23gb|AC022062.10| Mus musculus chromosome 5, clone RP23-57P23, com... 40 7.7
24gb|AC121767.3| Mus musculus BAC clone RP23-339E1 from chromosome... 40 7.7
25ref|XM_796706.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.7
26ref|XM_774836.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.7
27ref|XM_792960.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.7
28gb|AC150683.3| Mus musculus BAC clone RP23-435E16 from chromosom... 40 7.7
29dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 7.7
30gb|AF204951.2|AF204951 Ectocarpus siliculosus virus, complete ge... 40 7.7
31gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplas... 40 7.7
32emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 7.7
33gb|AC124627.22| Mus musculus chromosome 19, clone RP23-435K14, c... 40 7.7
34gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 7.7
35gb|AC117797.9| Mus musculus chromosome 19, clone RP24-555M16, co... 40 7.7 
>ref|XM_471066.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1278

 Score =  343 bits (173), Expect = 4e-91
 Identities = 291/331 (87%)
 Strand = Plus / Minus

                                                                        
Query: 234  agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 293
            ||||||| ||||||||||||||||||  ||| ||||| |||| |||||| ||||||||||
Sbjct: 1276 agacttgggccgtgccttgcgtgaacaagggatcctcacaccggtacttcccgtcagggc 1217

                                                                        
Query: 294  cgatgccaaagcccttgggatcggcaaacacgttctccagcagctggctccgtgggggga 353
            | || ||||||||||||||||| |  |||||||| ||||| ||||||||||| || ||||
Sbjct: 1216 caattccaaagcccttgggatctgagaacacgttttccagaagctggctccggggaggga 1157

                                                                        
Query: 354  gcgggctcgcgtcggcgaactccaccgcctcttcgacgacgtcgtcaatcttcttctcga 413
            ||||||| ||||| ||||||||||| |||||||| || || || || ||||| |||||||
Sbjct: 1156 gcgggcttgcgtcagcgaactccacggcctcttcaacaacatcatcgatctttttctcga 1097

                                                                        
Query: 414  tgctcttcagctcggcttcagacgcgaggttctgctcgatgatgtacttcttcagggatg 473
            ||||||||||||||| |||||  || |||||||| ||||||||||||||||||| || ||
Sbjct: 1096 tgctcttcagctcggattcagttgcaaggttctgttcgatgatgtacttcttcaaggctg 1037

                                                                        
Query: 474  tgatggggtcccttgcggcgtantgagatttctcatcaggcctnctgagttcatctggat 533
            | |||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||
Sbjct: 1036 taatggggtcccttgcggcgtaatgagatttctcatcaggtctcctgagctcatctggat 977

                                           
Query: 534  cagcaagagagtggcctctgaacctgtaagt 564
            |||||||||| || |||||||||| ||||||
Sbjct: 976  cagcaagagaatgccctctgaaccggtaagt 946
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>dbj|AK069299.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012M21, full
            insert sequence
          Length = 1736

 Score =  343 bits (173), Expect = 4e-91
 Identities = 291/331 (87%)
 Strand = Plus / Minus

                                                                        
Query: 234  agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 293
            ||||||| ||||||||||||||||||  ||| ||||| |||| |||||| ||||||||||
Sbjct: 1416 agacttgggccgtgccttgcgtgaacaagggatcctcacaccggtacttcccgtcagggc 1357

                                                                        
Query: 294  cgatgccaaagcccttgggatcggcaaacacgttctccagcagctggctccgtgggggga 353
            | || ||||||||||||||||| |  |||||||| ||||| ||||||||||| || ||||
Sbjct: 1356 caattccaaagcccttgggatctgagaacacgttttccagaagctggctccggggaggga 1297

                                                                        
Query: 354  gcgggctcgcgtcggcgaactccaccgcctcttcgacgacgtcgtcaatcttcttctcga 413
            ||||||| ||||| ||||||||||| |||||||| || || || || ||||| |||||||
Sbjct: 1296 gcgggcttgcgtcagcgaactccacggcctcttcaacaacatcatcgatctttttctcga 1237

                                                                        
Query: 414  tgctcttcagctcggcttcagacgcgaggttctgctcgatgatgtacttcttcagggatg 473
            ||||||||||||||| |||||  || |||||||| ||||||||||||||||||| || ||
Sbjct: 1236 tgctcttcagctcggattcagttgcaaggttctgttcgatgatgtacttcttcaaggctg 1177

                                                                        
Query: 474  tgatggggtcccttgcggcgtantgagatttctcatcaggcctnctgagttcatctggat 533
            | |||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||
Sbjct: 1176 taatggggtcccttgcggcgtaatgagatttctcatcaggtctcctgagctcatctggat 1117

                                           
Query: 534  cagcaagagagtggcctctgaacctgtaagt 564
            |||||||||| || |||||||||| ||||||
Sbjct: 1116 cagcaagagaatgccctctgaaccggtaagt 1086
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>gb|AY103738.1| Zea mays PCO146589 mRNA sequence
          Length = 1787

 Score =  285 bits (144), Expect = 8e-74
 Identities = 289/338 (85%)
 Strand = Plus / Minus

                                                                        
Query: 230  ccttagacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtca 289
            ||||| ||||| || |||||||| ||||||||||| ||||||||||||||||| || || 
Sbjct: 1538 ccttaaacttgggcggtgccttgggtgaacttgggatcctcgcacctgtacttaccatcg 1479

                                                                        
Query: 290  gggccgatgccaaagcccttgggatcggcaaacacgttctccagcagctggctccgtggg 349
            |||||||| |||||||| ||||| ||||||||||||||||||| ||||||||| || || 
Sbjct: 1478 gggccgataccaaagcctttggggtcggcaaacacgttctccaacagctggctgcgcggc 1419

                                                                        
Query: 350  gggagcgggctcgcgtcggcgaactccaccgcctcttcgacgacgtcgtcaatcttcttc 409
            ||  ||||||||||||| || ||||| || ||||| || ||||| ||||| |||||||||
Sbjct: 1418 ggatgcgggctcgcgtcagcaaactcgacagcctcctcaacgacatcgtcgatcttcttc 1359

                                                                        
Query: 410  tcgatgctcttcagctcggcttcagacgcgaggttctgctcgatgatgtacttcttcagg 469
            ||||||||||||||||||| ||| |  |||||||||||||| |||||||||||||||| |
Sbjct: 1358 tcgatgctcttcagctcggattcggttgcgaggttctgctctatgatgtacttcttcaag 1299

                                                                        
Query: 470  gatgtgatggggtcccttgcggcgtantgagatttctcatcaggcctnctgagttcatct 529
            |  ||||| |  |||||||||||||| || | ||||||||||||| | ||||| ||||||
Sbjct: 1298 gccgtgatagaatcccttgcggcgtagtgtgttttctcatcaggcttcctgagctcatct 1239

                                                  
Query: 530  ggatcagcaagagagtggcctctgaacctgtaagtttc 567
            || || ||||| ||||| || | ||||||||| |||||
Sbjct: 1238 gggtctgcaagggagtgaccccggaacctgtatgtttc 1201
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  281 bits (142), Expect = 1e-72
 Identities = 243/277 (87%)
 Strand = Plus / Minus

                                                                           
Query: 234     agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 293
               ||||||| ||||||||||||||||||  ||| ||||| |||| |||||| ||||||||||
Sbjct: 1126401 agacttgggccgtgccttgcgtgaacaagggatcctcacaccggtacttcccgtcagggc 1126342

                                                                           
Query: 294     cgatgccaaagcccttgggatcggcaaacacgttctccagcagctggctccgtgggggga 353
               | || ||||||||||||||||| |  |||||||| ||||| ||||||||||| || ||||
Sbjct: 1126341 caattccaaagcccttgggatctgagaacacgttttccagaagctggctccggggaggga 1126282

                                                                           
Query: 354     gcgggctcgcgtcggcgaactccaccgcctcttcgacgacgtcgtcaatcttcttctcga 413
               ||||||| ||||| ||||||||||| |||||||| || || || || ||||| |||||||
Sbjct: 1126281 gcgggcttgcgtcagcgaactccacggcctcttcaacaacatcatcgatctttttctcga 1126222

                                                                           
Query: 414     tgctcttcagctcggcttcagacgcgaggttctgctcgatgatgtacttcttcagggatg 473
               ||||||||||||||| |||||  || |||||||| ||||||||||||||||||| || ||
Sbjct: 1126221 tgctcttcagctcggattcagttgcaaggttctgttcgatgatgtacttcttcaaggctg 1126162

                                                    
Query: 474     tgatggggtcccttgcggcgtantgagatttctcatc 510
               | |||||||||||||||||||| ||||||||||||||
Sbjct: 1126161 taatggggtcccttgcggcgtaatgagatttctcatc 1126125



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                      
Query: 510     caggcctnctgagttcatctggatcagcaagagagtggcctctgaacctgtaagt 564
               |||| || ||||| |||||||||||||||||||| || |||||||||| ||||||
Sbjct: 1124997 caggtctcctgagctcatctggatcagcaagagaatgccctctgaaccggtaagt 1124943



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 34       catttcttgggtaaaaaactg 54
                |||||||||||||||||||||
Sbjct: 30276636 catttcttgggtaaaaaactg 30276656
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>emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020P07,
             complete sequence
          Length = 167895

 Score =  281 bits (142), Expect = 1e-72
 Identities = 243/277 (87%)
 Strand = Plus / Minus

                                                                         
Query: 234   agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 293
             ||||||| ||||||||||||||||||  ||| ||||| |||| |||||| ||||||||||
Sbjct: 68783 agacttgggccgtgccttgcgtgaacaagggatcctcacaccggtacttcccgtcagggc 68724

                                                                         
Query: 294   cgatgccaaagcccttgggatcggcaaacacgttctccagcagctggctccgtgggggga 353
             | || ||||||||||||||||| |  |||||||| ||||| ||||||||||| || ||||
Sbjct: 68723 caattccaaagcccttgggatctgagaacacgttttccagaagctggctccggggaggga 68664

                                                                         
Query: 354   gcgggctcgcgtcggcgaactccaccgcctcttcgacgacgtcgtcaatcttcttctcga 413
             ||||||| ||||| ||||||||||| |||||||| || || || || ||||| |||||||
Sbjct: 68663 gcgggcttgcgtcagcgaactccacggcctcttcaacaacatcatcgatctttttctcga 68604

                                                                         
Query: 414   tgctcttcagctcggcttcagacgcgaggttctgctcgatgatgtacttcttcagggatg 473
             ||||||||||||||| |||||  || |||||||| ||||||||||||||||||| || ||
Sbjct: 68603 tgctcttcagctcggattcagttgcaaggttctgttcgatgatgtacttcttcaaggctg 68544

                                                  
Query: 474   tgatggggtcccttgcggcgtantgagatttctcatc 510
             | |||||||||||||||||||| ||||||||||||||
Sbjct: 68543 taatggggtcccttgcggcgtaatgagatttctcatc 68507



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                    
Query: 510   caggcctnctgagttcatctggatcagcaagagagtggcctctgaacctgtaagt 564
             |||| || ||||| |||||||||||||||||||| || |||||||||| ||||||
Sbjct: 67379 caggtctcctgagctcatctggatcagcaagagaatgccctctgaaccggtaagt 67325
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>gb|BT018932.1| Zea mays clone Contig65.F mRNA sequence
          Length = 851

 Score =  236 bits (119), Expect = 6e-59
 Identities = 270/321 (84%)
 Strand = Plus / Minus

                                                                       
Query: 247 gccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggccgatgccaaagcc 306
           |||||| | ||||||||| ||||| ||||||||||| || || ||||| || ||||||||
Sbjct: 599 gccttgggggaacttgggatcctcccacctgtacttaccatcggggccaataccaaagcc 540

                                                                       
Query: 307 cttgggatcggcaaacacgttctccagcagctggctccgtggggggagcgggctcgcgtc 366
            ||||| ||||||||||||||||||| ||||||||| || ||||| || |||||||||||
Sbjct: 539 tttggggtcggcaaacacgttctccaacagctggctgcgcgggggaagggggctcgcgtc 480

                                                                       
Query: 367 ggcgaactccaccgcctcttcgacgacgtcgtcaatcttcttctcgatgctcttcagctc 426
             | ||||| || ||||| || || || |||||||| |||||||||||||||||||||||
Sbjct: 479 aacaaactcgacagcctcctcaacaacatcgtcaattttcttctcgatgctcttcagctc 420

                                                                       
Query: 427 ggcttcagacgcgaggttctgctcgatgatgtacttcttcagggatgtgatggggtccct 486
           || ||| |  |||||||||||||| ||||||||||| |||| ||  ||||| |  |||||
Sbjct: 419 ggattcggttgcgaggttctgctctatgatgtactttttcaaggccgtgatagaatccct 360

                                                                       
Query: 487 tgcggcgtantgagatttctcatcaggcctnctgagttcatctggatcagcaagagagtg 546
           ||||||||| || | ||||||||||||| | ||||| |||||||| || ||||| |||||
Sbjct: 359 tgcggcgtagtgtgttttctcatcaggcttcctgagctcatctgggtctgcaagggagtg 300

                                
Query: 547 gcctctgaacctgtaagtttc 567
            || | ||||||||| |||||
Sbjct: 299 accccggaacctgtatgtttc 279
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>gb|BT012988.1| Lycopersicon esculentum clone 114208R, mRNA sequence
          Length = 1692

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 84/98 (85%)
 Strand = Plus / Minus

                                                                        
Query: 245  gtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggccgatgccaaag 304
            |||||||  ||||||||||| || || || |||||| | || ||||| || |||||||||
Sbjct: 1423 gtgccttcggtgaacttgggatcttcacatctgtaccttccatcaggcccaatgccaaag 1364

                                                  
Query: 305  cccttgggatcggcaaacacgttctccagcagctggct 342
            ||||| ||||| |||||||||||||| |||||||||||
Sbjct: 1363 ccctttggatcagcaaacacgttctcgagcagctggct 1326
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>emb|BX572096.1| Prochlorococcus marinus MIT9313 complete genome; segment 2/7
          Length = 349323

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 521   agttcatctggatcagcaagagagtggcc 549
             ||||||||||||||||||||||| |||||
Sbjct: 45964 agttcatctggatcagcaagagaatggcc 45992
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>ref|NM_099991.2| Arabidopsis thaliana PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA);
            oxidoreductase, acting on the aldehyde or oxo group of
            donors, disulfide as acc> AT1G01090 (PDH-E1 ALPHA) mRNA,
            complete cds
          Length = 1620

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 82/102 (80%)
 Strand = Plus / Minus

                                                                        
Query: 234  agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 293
            ||||||| || |||||||  || |||||||||||||| || ||||||   || ||||| |
Sbjct: 1398 agacttgagctgtgccttcggtaaacttggggtcctcacatctgtaccgtccatcaggtc 1339

                                                      
Query: 294  cgatgccaaagcccttgggatcggcaaacacgttctccagca 335
            | || ||||| || || ||||| |||||||| ||||| ||||
Sbjct: 1338 caattccaaatccttttggatcagcaaacacattctctagca 1297
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>gb|U80185.1|ATU80185 Arabidopsis thaliana pyruvate dehydrogenase E1 alpha subunit mRNA,
            nuclear gene encoding plastid protein, complete cds
          Length = 1541

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 82/102 (80%)
 Strand = Plus / Minus

                                                                        
Query: 234  agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 293
            ||||||| || |||||||  || |||||||||||||| || ||||||   || ||||| |
Sbjct: 1402 agacttgagctgtgccttcggtaaacttggggtcctcacatctgtaccgtccatcaggtc 1343

                                                      
Query: 294  cgatgccaaagcccttgggatcggcaaacacgttctccagca 335
            | || ||||| || || ||||| |||||||| ||||| ||||
Sbjct: 1342 caattccaaatccttttggatcagcaaacacattctctagca 1301
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>gb|AY063724.1| Arabidopsis thaliana At1g01090/T25K16_8 mRNA, complete cds
          Length = 1287

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 82/102 (80%)
 Strand = Plus / Minus

                                                                        
Query: 234  agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 293
            ||||||| || |||||||  || |||||||||||||| || ||||||   || ||||| |
Sbjct: 1285 agacttgagctgtgccttcggtaaacttggggtcctcacatctgtaccgtccatcaggtc 1226

                                                      
Query: 294  cgatgccaaagcccttgggatcggcaaacacgttctccagca 335
            | || ||||| || || ||||| |||||||| ||||| ||||
Sbjct: 1225 caattccaaatccttttggatcagcaaacacattctctagca 1184
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>gb|AY052721.1| Arabidopsis thaliana At1g01090/T25K16_8 mRNA, complete cds
          Length = 1610

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 82/102 (80%)
 Strand = Plus / Minus

                                                                        
Query: 234  agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 293
            ||||||| || |||||||  || |||||||||||||| || ||||||   || ||||| |
Sbjct: 1400 agacttgagctgtgccttcggtaaacttggggtcctcacatctgtaccgtccatcaggtc 1341

                                                      
Query: 294  cgatgccaaagcccttgggatcggcaaacacgttctccagca 335
            | || ||||| || || ||||| |||||||| ||||| ||||
Sbjct: 1340 caattccaaatccttttggatcagcaaacacattctctagca 1299
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>emb|BX815365.1|CNS0ACRU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS55ZC08 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1441

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 82/102 (80%)
 Strand = Plus / Minus

                                                                        
Query: 234  agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 293
            ||||||| || |||||||  || |||||||||||||| || ||||||   || ||||| |
Sbjct: 1368 agacttgagctgtgccttcggtaaacttggggtcctcacatctgtaccgtccatcaggtc 1309

                                                      
Query: 294  cgatgccaaagcccttgggatcggcaaacacgttctccagca 335
            | || ||||| || || ||||| |||||||| ||||| ||||
Sbjct: 1308 caattccaaatccttttggatcagcaaacacattctctagca 1267
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>emb|BX815342.1|CNS0ACRT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS53ZG06 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1557

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 82/102 (80%)
 Strand = Plus / Minus

                                                                        
Query: 234  agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 293
            ||||||| || |||||||  || |||||||||||||| || ||||||   || ||||| |
Sbjct: 1391 agacttgagctgtgccttcggtaaacttggggtcctcacatctgtaccgtccatcaggtc 1332

                                                      
Query: 294  cgatgccaaagcccttgggatcggcaaacacgttctccagca 335
            | || ||||| || || ||||| |||||||| ||||| ||||
Sbjct: 1331 caattccaaatccttttggatcagcaaacacattctctagca 1290
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>gb|AC007323.5|AC007323 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I,
             complete sequence
          Length = 86436

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 82/102 (80%)
 Strand = Plus / Plus

                                                                         
Query: 234   agacttgcgccgtgccttgcgtgaacttggggtcctcgcacctgtacttgccgtcagggc 293
             ||||||| || |||||||  || |||||||||||||| || ||||||   || ||||| |
Sbjct: 47409 agacttgagctgtgccttcggtaaacttggggtcctcacatctgtaccgtccatcaggtc 47468

                                                       
Query: 294   cgatgccaaagcccttgggatcggcaaacacgttctccagca 335
             | || ||||| || || ||||| |||||||| ||||| ||||
Sbjct: 47469 caattccaaatccttttggatcagcaaacacattctctagca 47510
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>dbj|AP002004.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-693N9, complete
              sequence
          Length = 172081

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 94     attacacagtgatatatgacct 115
              ||||||||||||||||||||||
Sbjct: 148689 attacacagtgatatatgacct 148710
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>gb|AE009830.1|AE009830 Pyrobaculum aerophilum strain IM2 section 85 of 201 of the complete
            genome
          Length = 10618

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 379  cgcctcttcgacgacgtcgtc 399
            |||||||||||||||||||||
Sbjct: 3396 cgcctcttcgacgacgtcgtc 3376
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>gb|AC019129.8| Homo sapiens BAC clone RP11-559M23 from 2, complete sequence
          Length = 172611

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 86     agcaatgaattacacagtgat 106
              |||||||||||||||||||||
Sbjct: 121429 agcaatgaattacacagtgat 121409
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>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12,
              complete sequence
          Length = 186142

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 34     catttcttgggtaaaaaactg 54
              |||||||||||||||||||||
Sbjct: 172949 catttcttgggtaaaaaactg 172969
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>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12,
             complete sequence
          Length = 160989

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 34    catttcttgggtaaaaaactg 54
             |||||||||||||||||||||
Sbjct: 26532 catttcttgggtaaaaaactg 26552
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>gb|AC167967.6| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940144D9, complete sequence
          Length = 114276

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 375   ccaccgcctcttcgacgacgt 395
             |||||||||||||||||||||
Sbjct: 93974 ccaccgcctcttcgacgacgt 93954
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 383     tcttcgacgacgtcgtcaat 402
               ||||||||||||||||||||
Sbjct: 1607177 tcttcgacgacgtcgtcaat 1607196
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>gb|AC022062.10| Mus musculus chromosome 5, clone RP23-57P23, complete sequence
          Length = 235363

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     tgaactggagaacatttctt 41
              ||||||||||||||||||||
Sbjct: 123197 tgaactggagaacatttctt 123178
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>gb|AC121767.3| Mus musculus BAC clone RP23-339E1 from chromosome 1, complete sequence
          Length = 184736

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 548    cctctgaacctgtaagtttc 567
              ||||||||||||||||||||
Sbjct: 137425 cctctgaacctgtaagtttc 137444
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>ref|XM_796706.1| PREDICTED: Strongylocentrotus purpuratus similar to CG3058-PA,
           transcript variant 2 (LOC578262), mRNA
          Length = 1589

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 450 cgatgatgtacttcttcagg 469
           ||||||||||||||||||||
Sbjct: 551 cgatgatgtacttcttcagg 570
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>ref|XM_774836.1| PREDICTED: Strongylocentrotus purpuratus similar to CG3058-PA,
           transcript variant 1 (LOC578262), mRNA
          Length = 1634

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 450 cgatgatgtacttcttcagg 469
           ||||||||||||||||||||
Sbjct: 596 cgatgatgtacttcttcagg 615
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>ref|XM_792960.1| PREDICTED: Strongylocentrotus purpuratus similar to CG3058-PA
           (LOC593488), mRNA
          Length = 845

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 450 cgatgatgtacttcttcagg 469
           ||||||||||||||||||||
Sbjct: 609 cgatgatgtacttcttcagg 628
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>gb|AC150683.3| Mus musculus BAC clone RP23-435E16 from chromosome 7, complete sequence
          Length = 198646

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 519   tgagttcatctggatcagca 538
             ||||||||||||||||||||
Sbjct: 32995 tgagttcatctggatcagca 33014
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 363    cgtcggcgaactccaccgcc 382
              ||||||||||||||||||||
Sbjct: 241332 cgtcggcgaactccaccgcc 241313
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>gb|AF204951.2|AF204951 Ectocarpus siliculosus virus, complete genome
          Length = 335593

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    ttgggatcggcaaacacgtt 327
              ||||||||||||||||||||
Sbjct: 178294 ttgggatcggcaaacacgtt 178313
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>gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplast, complete genome
          Length = 164921

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 518    ctgagttcatctggatcagc 537
              ||||||||||||||||||||
Sbjct: 152337 ctgagttcatctggatcagc 152356
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    cgttctccagcagctggctc 343
              ||||||||||||||||||||
Sbjct: 400745 cgttctccagcagctggctc 400764
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>gb|AC124627.22| Mus musculus chromosome 19, clone RP23-435K14, complete sequence
          Length = 228991

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 545   tggcctctgaacctgtaagt 564
             ||||||||||||||||||||
Sbjct: 42410 tggcctctgaacctgtaagt 42391
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 378     ccgcctcttcgacgacgtcg 397
               ||||||||||||||||||||
Sbjct: 2237008 ccgcctcttcgacgacgtcg 2237027
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>gb|AC117797.9| Mus musculus chromosome 19, clone RP24-555M16, complete sequence
          Length = 179740

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 545   tggcctctgaacctgtaagt 564
             ||||||||||||||||||||
Sbjct: 52161 tggcctctgaacctgtaagt 52180


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,067,985
Number of Sequences: 3902068
Number of extensions: 4067985
Number of successful extensions: 90780
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90539
Number of HSP's gapped (non-prelim): 241
length of query: 567
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 544
effective length of database: 17,143,297,704
effective search space: 9325953950976
effective search space used: 9325953950976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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