ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23i20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YDB1_SCHPO (Q10354) Hypothetical protein C22E12.01 in chromosome I 42 0.001
2TPT2_BRAOB (P52178) Triose phosphate/phosphate translocator, non... 34 0.27
3YJT3_YEAST (P39542) Hypothetical protein YJL193w 33 0.60
4SL35E_HUMAN (Q96K37) Solute carrier family 35 member E1 32 0.78
5SL35E_MOUSE (Q8CD26) Solute carrier family 35 member E1 32 0.78
6VG48_SHV21 (Q01033) Hypothetical gene 48 protein 30 3.9
7LIPB_SHEON (Q8EHQ5) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl... 29 8.6

>YDB1_SCHPO (Q10354) Hypothetical protein C22E12.01 in chromosome I|
          Length = 374

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = -3

Query: 511 KTSALTMNVAGVVKDWLLIAFSWSVIRDTVTPINLFGYGIAFLGVGYYNH 362
           KTS +T++V G++K+ + I  S     D + PIN+ G  I   G+G YN+
Sbjct: 301 KTSIVTLSVCGILKEIITIIASTLFYHDILLPINIVGLVITLCGIGVYNY 350



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>TPT2_BRAOB (P52178) Triose phosphate/phosphate translocator, non-green|
           plastid, chloroplast precursor (CTPT)
          Length = 402

 Score = 33.9 bits (76), Expect = 0.27
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = -3

Query: 511 KTSALTMNVAGVVKDWLLIAFSWSVIRDTVTPINLFGYGIAFLGVGYYN 365
           + S +T +V   VK  ++I  S    +  V+P+N FG GIA  GV  Y+
Sbjct: 342 RVSPVTHSVGNCVKRVVVIVSSVIFFKTPVSPVNAFGTGIALAGVFLYS 390



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>YJT3_YEAST (P39542) Hypothetical protein YJL193w|
          Length = 402

 Score = 32.7 bits (73), Expect = 0.60
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -3

Query: 511 KTSALTMNVAGVVKDWLLIAFSWSVIRDTVTPINLFGYGIAFLGVGYY 368
           + S LT ++A ++K + +IA SW  I   +T + +FG  +  LG+  Y
Sbjct: 339 EVSTLTYSIANLMKRFAIIAVSWVFIGRRITWLQVFGLVLNTLGLFLY 386



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>SL35E_HUMAN (Q96K37) Solute carrier family 35 member E1|
          Length = 266

 Score = 32.3 bits (72), Expect = 0.78
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -3

Query: 505 SALTMNVAGVVKDWLLIAFSWSVIRDTVTPINLFGYGIAFLGVGYYN 365
           S L+ +VA   K  ++I  S  ++R+ VT  N+ G   A LGV  YN
Sbjct: 143 SPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLGMMTAILGVFLYN 189



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>SL35E_MOUSE (Q8CD26) Solute carrier family 35 member E1|
          Length = 265

 Score = 32.3 bits (72), Expect = 0.78
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -3

Query: 505 SALTMNVAGVVKDWLLIAFSWSVIRDTVTPINLFGYGIAFLGVGYYN 365
           S L+ +VA   K  ++I  S  ++R+ VT  N+ G   A LGV  YN
Sbjct: 143 SPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLGMMTAILGVFLYN 189



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>VG48_SHV21 (Q01033) Hypothetical gene 48 protein|
          Length = 797

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 386 EGDPVAEEVDRGHRVPDHGPGEGDEQPVLDDAGHVHGERG 505
           EGD   +E D G    D G  EGDE     D G   G+ G
Sbjct: 625 EGDEGEDEGDEGEDEGDEGEDEGDEGEDEGDEGEDEGDEG 664



 Score = 30.0 bits (66), Expect = 3.9
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 386 EGDPVAEEVDRGHRVPDHGPGEGDEQPVLDDAGHVHGERG 505
           EGD   +E D G    D G  EGDE     D G   G+ G
Sbjct: 618 EGDEGEDEGDEGEDEGDEGEDEGDEGEDEGDEGEDEGDEG 657



 Score = 30.0 bits (66), Expect = 3.9
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 386 EGDPVAEEVDRGHRVPDHGPGEGDEQPVLDDAGHVHGERG 505
           EGD   +E D G    D G  EGDE     D G   G+ G
Sbjct: 611 EGDEGEDEGDEGEDEGDEGEDEGDEGEDEGDEGEDEGDEG 650



 Score = 29.3 bits (64), Expect = 6.6
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 386 EGDPVAEEVDRGHRVPDHGPGEGDEQPVLDDAGHVHGERG 505
           EG+   +E D G    D G  EGDE     D G   G+ G
Sbjct: 604 EGEDEGDEGDEGEDEGDEGEDEGDEGEDEGDEGEDEGDEG 643



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>LIPB_SHEON (Q8EHQ5) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier|
           protein]-protein-N-lipoyltransferase) (Lipoate-protein
           ligase B)
          Length = 219

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 389 GDPVAEEVDRGHRVPDHGPGEGDEQPVLD 475
           GD    +VDRG +V  HGPG+    P+LD
Sbjct: 64  GDIPVIQVDRGGQVTYHGPGQLVVYPLLD 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,622,827
Number of Sequences: 219361
Number of extensions: 940145
Number of successful extensions: 2694
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2686
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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