ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23i19 |
|---|---|
| Clone Library Name | barley_pub |
>GUAD_BACSU (O34598) Guanine deaminase (EC 3.5.4.3) (Guanase) (Guanine aminase)| (Guanine aminohydrolase) (GAH) (GDEase) Length = 156 Score = 98.2 bits (243), Expect = 8e-21 Identities = 44/80 (55%), Positives = 56/80 (70%) Frame = -3 Query: 434 GPFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPC 255 GPFGAV+V++ +I N V + DPTAHAEVTAIR+ACK LG L DC +Y SC PC Sbjct: 24 GPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPC 83 Query: 254 PMCFGAVHLSRIKRLVYGAK 195 PMC GA++ +R K + Y A+ Sbjct: 84 PMCLGAIYWARPKAVFYAAE 103
>TADA_AQUAE (O67050) tRNA-specific adenosine deaminase (EC 3.5.4.-)| Length = 151 Score = 76.3 bits (186), Expect = 3e-14 Identities = 34/78 (43%), Positives = 51/78 (65%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPCP 252 P GA++V+ ++I HN V DPTAHAE+ AI+EAC++L L C +Y + PC Sbjct: 24 PVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPCI 83 Query: 251 MCFGAVHLSRIKRLVYGA 198 MC A+ LSRI+++++ A Sbjct: 84 MCSYALVLSRIEKVIFSA 101
>YAAJ_BACSU (P21335) Hypothetical protein yaaJ| Length = 161 Score = 75.5 bits (184), Expect = 5e-14 Identities = 36/78 (46%), Positives = 48/78 (61%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPCP 252 P GAV+V N ++I HN+ AHAE+ I EACK LG L +Y + PCP Sbjct: 25 PIGAVLVINGEIIARAHNLRETEQRSIAHAEMLVIDEACKALGTWRLEGATLYVTLEPCP 84 Query: 251 MCFGAVHLSRIKRLVYGA 198 MC GAV LSR++++V+GA Sbjct: 85 MCAGAVVLSRVEKVVFGA 102
>Y236_BUCBP (Q89AM8) Hypothetical protein bbp_236| Length = 162 Score = 70.9 bits (172), Expect = 1e-12 Identities = 37/79 (46%), Positives = 47/79 (59%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPCP 252 P GAV+V N +I N + N DPTAHAE+ A+R K L L +Y + PC Sbjct: 26 PVGAVLVFNNTIIGKGLNSSILNHDPTAHAEIKALRNGAKFLKNYRLLHTTLYVTLEPCI 85 Query: 251 MCFGAVHLSRIKRLVYGAK 195 MC+GA+ SRI RLV+GAK Sbjct: 86 MCYGAIIHSRISRLVFGAK 104
>Y255_BUCAI (P57343) Hypothetical protein BU255| Length = 161 Score = 69.3 bits (168), Expect = 4e-12 Identities = 35/78 (44%), Positives = 49/78 (62%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPCP 252 P GA++V ++I N ++ DPTAHAE+ A+R A KK+ L + +Y + PC Sbjct: 27 PIGAILVFKERIIGIGWNSSISKNDPTAHAEIIALRGAGKKIKNYRLLNTTLYVTLQPCI 86 Query: 251 MCFGAVHLSRIKRLVYGA 198 MC GA+ SRIKRLV+GA Sbjct: 87 MCCGAIIQSRIKRLVFGA 104
>Y246_BUCAP (Q8K9R4) Hypothetical protein BUsg246| Length = 151 Score = 68.9 bits (167), Expect = 5e-12 Identities = 34/78 (43%), Positives = 49/78 (62%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPCP 252 P GA++V ++I N V++ D TAHAE+ A+REA + + L + +Y + PC Sbjct: 27 PIGAILVFQEKIIGTGWNSVISQNDSTAHAEIIALREAGRNIKNYRLVNTTLYVTLQPCM 86 Query: 251 MCFGAVHLSRIKRLVYGA 198 MC GA+ SRIKRLV+GA Sbjct: 87 MCCGAIINSRIKRLVFGA 104
>TADA_HAEIN (P44931) tRNA-specific adenosine deaminase (EC 3.5.4.-)| Length = 173 Score = 68.6 bits (166), Expect = 6e-12 Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Frame = -3 Query: 431 PFGAVVVRNXQVIVG-CHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPC 255 P GAV+V + + I+G N+ + DPTAHAE+ A+R K + L + +Y + PC Sbjct: 32 PVGAVLVDDARNIIGEGWNLSIVQSDPTAHAEIIALRNGAKNIQNYRLLNSTLYVTLEPC 91 Query: 254 PMCFGAVHLSRIKRLVYGA 198 MC GA+ SRIKRLV+GA Sbjct: 92 TMCAGAILHSRIKRLVFGA 110
>Y831_RICPR (Q9ZCC6) Hypothetical protein RP831| Length = 148 Score = 67.4 bits (163), Expect = 1e-11 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Frame = -3 Query: 431 PFGAVVV--RNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXP 258 P G V+V N ++IV HN + +P HAE+ AI AC + L+D +Y + P Sbjct: 18 PVGVVIVCRLNQKIIVSSHNNIEEKKNPLCHAEIIAINTACNLISSKNLNDYDIYVTLEP 77 Query: 257 CPMCFGAVHLSRIKRLVYGA 198 C MC A+ SR+KRL YGA Sbjct: 78 CAMCASAISHSRLKRLFYGA 97
>TILS_DEIRA (Q9RV23) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 582 Score = 67.0 bits (162), Expect = 2e-11 Identities = 37/79 (46%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGC-HNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPC 255 P GAVV+ IVG N + D T HAE+ A+REA LG LSDC + + PC Sbjct: 425 PVGAVVLNADGEIVGRGRNTSREDGDMTCHAELAALREAAAGLGTPYLSDCTLVVTLEPC 484 Query: 254 PMCFGAVHLSRIKRLVYGA 198 PMC GA +RI +VYGA Sbjct: 485 PMCLGAALEARIGHIVYGA 503
>TADA_SALTY (Q7CQ08) tRNA-specific adenosine deaminase (EC 3.5.4.-)| Length = 183 Score = 67.0 bits (162), Expect = 2e-11 Identities = 35/79 (44%), Positives = 47/79 (59%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPCP 252 P GAV+V N +VI N + DPTAHAE+ A+R+ L L D +Y + PC Sbjct: 40 PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDTTLYVTLEPCV 99 Query: 251 MCFGAVHLSRIKRLVYGAK 195 MC GA+ SRI R+V+GA+ Sbjct: 100 MCAGAMVHSRIGRVVFGAR 118
>TADA_SALTI (Q8XGY4) tRNA-specific adenosine deaminase (EC 3.5.4.-)| Length = 183 Score = 67.0 bits (162), Expect = 2e-11 Identities = 35/79 (44%), Positives = 47/79 (59%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPCP 252 P GAV+V N +VI N + DPTAHAE+ A+R+ L L D +Y + PC Sbjct: 40 PVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDTTLYVTLEPCV 99 Query: 251 MCFGAVHLSRIKRLVYGAK 195 MC GA+ SRI R+V+GA+ Sbjct: 100 MCAGAMVHSRIGRVVFGAR 118
>TADA_SHIFL (P68397) tRNA-specific adenosine deaminase (EC 3.5.4.-)| Length = 178 Score = 66.6 bits (161), Expect = 2e-11 Identities = 34/79 (43%), Positives = 47/79 (59%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPCP 252 P GAV+V N +VI N + DPTAHAE+ A+R+ + L D +Y + PC Sbjct: 40 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV 99 Query: 251 MCFGAVHLSRIKRLVYGAK 195 MC GA+ SRI R+V+GA+ Sbjct: 100 MCAGAMIHSRIGRVVFGAR 118
>TADA_ECOLI (P68398) tRNA-specific adenosine deaminase (EC 3.5.4.-)| Length = 178 Score = 66.6 bits (161), Expect = 2e-11 Identities = 34/79 (43%), Positives = 47/79 (59%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPCP 252 P GAV+V N +VI N + DPTAHAE+ A+R+ + L D +Y + PC Sbjct: 40 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV 99 Query: 251 MCFGAVHLSRIKRLVYGAK 195 MC GA+ SRI R+V+GA+ Sbjct: 100 MCAGAMIHSRIGRVVFGAR 118
>TADA_ECOL6 (Q8FF24) tRNA-specific adenosine deaminase (EC 3.5.4.-)| Length = 178 Score = 66.6 bits (161), Expect = 2e-11 Identities = 34/79 (43%), Positives = 47/79 (59%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPCP 252 P GAV+V N +VI N + DPTAHAE+ A+R+ + L D +Y + PC Sbjct: 40 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV 99 Query: 251 MCFGAVHLSRIKRLVYGAK 195 MC GA+ SRI R+V+GA+ Sbjct: 100 MCAGAMIHSRIGRVVFGAR 118
>TADA_ECO57 (Q8XA44) tRNA-specific adenosine deaminase (EC 3.5.4.-)| Length = 178 Score = 66.6 bits (161), Expect = 2e-11 Identities = 34/79 (43%), Positives = 47/79 (59%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPCP 252 P GAV+V N +VI N + DPTAHAE+ A+R+ + L D +Y + PC Sbjct: 40 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV 99 Query: 251 MCFGAVHLSRIKRLVYGAK 195 MC GA+ SRI R+V+GA+ Sbjct: 100 MCAGAMIHSRIGRVVFGAR 118
>Y196_STRP8 (Q8P2R7) Hypothetical protein spyM18_0196| Length = 159 Score = 58.9 bits (141), Expect = 5e-09 Identities = 29/78 (37%), Positives = 43/78 (55%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPCP 252 P G V+V++ ++I HN + HAE+ AI EA G L D ++ + PC Sbjct: 29 PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPCV 88 Query: 251 MCFGAVHLSRIKRLVYGA 198 MC GA+ L+RI ++YGA Sbjct: 89 MCSGAIGLARIPHVIYGA 106
>Y214_STRP6 (Q5XE14) Hypothetical protein M6_Spy0214| Length = 171 Score = 58.9 bits (141), Expect = 5e-09 Identities = 29/78 (37%), Positives = 43/78 (55%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPCP 252 P G V+V++ ++I HN + HAE+ AI EA G L D ++ + PC Sbjct: 29 PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPCV 88 Query: 251 MCFGAVHLSRIKRLVYGA 198 MC GA+ L+RI ++YGA Sbjct: 89 MCSGAIGLARIPHVIYGA 106
>Y209_STRP1 (P68999) Hypothetical protein SPy0209/M5005_Spy0179| Length = 171 Score = 58.9 bits (141), Expect = 5e-09 Identities = 29/78 (37%), Positives = 43/78 (55%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPCP 252 P G V+V++ ++I HN + HAE+ AI EA G L D ++ + PC Sbjct: 29 PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPCV 88 Query: 251 MCFGAVHLSRIKRLVYGA 198 MC GA+ L+RI ++YGA Sbjct: 89 MCSGAIGLARIPHVIYGA 106
>Y153_STRP3 (Q8K8Q9) Hypothetical protein SpyM3_0153/SPs0158| Length = 171 Score = 58.9 bits (141), Expect = 5e-09 Identities = 29/78 (37%), Positives = 43/78 (55%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPCP 252 P G V+V++ ++I HN + HAE+ AI EA G L D ++ + PC Sbjct: 29 PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPCV 88 Query: 251 MCFGAVHLSRIKRLVYGA 198 MC GA+ L+RI ++YGA Sbjct: 89 MCSGAIGLARIPHVIYGA 106
>FCA1_CANAL (P78594) Cytosine deaminase (EC 3.5.4.1) (Cytosine aminohydrolase)| Length = 150 Score = 49.7 bits (117), Expect = 3e-06 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGC-HNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPC 255 P G+ ++ + ++G HN + H E++A+ A + GK DC +Y + PC Sbjct: 26 PIGSCIISSDDTVLGQGHNERIQKHSAILHGEMSALENAGRLPGK-TYKDCTIYTTLSPC 84 Query: 254 PMCFGAVHLSRIKRLVYG 201 MC GA+ L KR+V G Sbjct: 85 SMCTGAILLYGFKRVVMG 102
>FCY1_YEAST (Q12178) Cytosine deaminase (EC 3.5.4.1) (Cytosine aminohydrolase)| Length = 158 Score = 44.3 bits (103), Expect = 1e-04 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Frame = -3 Query: 431 PFGAVVVRNXQ--VIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXP 258 P G ++ N V+ HNM T H E++ + + GK+ D +Y + P Sbjct: 32 PIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVY-KDTTLYTTLSP 90 Query: 257 CPMCFGAVHLSRIKRLVYG 201 C MC GA+ + I R V G Sbjct: 91 CDMCTGAIIMYGIPRCVVG 109
>TILS_THET8 (Q5SI38) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 507 Score = 42.4 bits (98), Expect = 5e-04 Identities = 29/79 (36%), Positives = 43/79 (54%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPCP 252 P GAV+V +V+ HN V DPTAHAE+ +REA + +Y + PC Sbjct: 393 PVGAVLVLPGRVL-RAHNRVEGLRDPTAHAEMLLLREAGPE-----ARGGRLYVTLEPCL 446 Query: 251 MCFGAVHLSRIKRLVYGAK 195 MC A+ + ++ +VYGA+ Sbjct: 447 MCHHALAQAGVE-VVYGAE 464
>TILS_THET2 (Q72IF6) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 507 Score = 42.4 bits (98), Expect = 5e-04 Identities = 29/79 (36%), Positives = 43/79 (54%) Frame = -3 Query: 431 PFGAVVVRNXQVIVGCHNMVLNNXDPTAHAEVTAIREACKKLGKIXLSDCXMYASCXPCP 252 P GAV+V +V+ HN V DPTAHAE+ +REA + +Y + PC Sbjct: 393 PVGAVLVLPGRVL-RAHNRVEGLRDPTAHAEMLLLREAGPE-----ARGGRLYVTLEPCL 446 Query: 251 MCFGAVHLSRIKRLVYGAK 195 MC A+ + ++ +VYGA+ Sbjct: 447 MCHHALAQAGVE-VVYGAE 464
>DCTD_BPT4 (P16006) Deoxycytidylate deaminase (EC 3.5.4.12) (dCMP deaminase)| (dCD) Length = 193 Score = 35.8 bits (81), Expect = 0.046 Identities = 20/48 (41%), Positives = 25/48 (52%) Frame = -3 Query: 347 HAEVTAIREACKKLGKIXLSDCXMYASCXPCPMCFGAVHLSRIKRLVY 204 HAE+ AI A + I MY + PCP C A+ S IK+LVY Sbjct: 104 HAELNAILFAARNGSSI--EGATMYVTLSPCPDCAKAIAQSGIKKLVY 149
>DCTD_BPT2 (P00814) Deoxycytidylate deaminase (EC 3.5.4.12) (dCMP deaminase)| Length = 188 Score = 35.8 bits (81), Expect = 0.046 Identities = 20/48 (41%), Positives = 25/48 (52%) Frame = -3 Query: 347 HAEVTAIREACKKLGKIXLSDCXMYASCXPCPMCFGAVHLSRIKRLVY 204 HAE+ AI A + I MY + PCP C A+ S IK+LVY Sbjct: 104 HAELNAILFAARNGSSI--EGATMYVTLSPCPDCAKAIAQSGIKKLVY 149
>DCTD_CAEEL (P30648) Probable deoxycytidylate deaminase (EC 3.5.4.12) (dCMP| deaminase) Length = 197 Score = 30.0 bits (66), Expect = 2.5 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = -3 Query: 347 HAEVTAI-REACKKLGKIXLSDCXMYASCXPCPMCFGAVHLSRIKRLVY 204 HAE+ AI + C L DC +Y + PC C + SR+K++ + Sbjct: 117 HAEMNAIINKRCT-----TLHDCTVYVTLFPCNKCAQMLIQSRVKKVYF 160
>DCOR_TRYBB (P07805) Ornithine decarboxylase (EC 4.1.1.17) (ODC)| Length = 423 Score = 30.0 bits (66), Expect = 2.5 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -3 Query: 140 GTGFYQKANMEIKRADGNGALLAEQVFENTTREVSHV 30 GTGF +N EI+R G G + ++ N +++SH+ Sbjct: 82 GTGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHI 118
>TAD2_YEAST (P47058) tRNA-specific adenosine deaminase 2 (EC 3.5.4.-)| (tRNA-specific adenosine-34 deaminase subunit TAD2) Length = 250 Score = 28.9 bits (63), Expect = 5.7 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%) Frame = -3 Query: 350 AHAEVTAIREACKKLGKIXL----SDCXMYASCXPCPMCFGAVHLSRIKRLVYG 201 AHAE I + LG + D +Y + PC MC A+ I ++V+G Sbjct: 53 AHAEFMGIDQIKAMLGSRGVVDVFKDITLYVTVEPCIMCASALKQLDIGKVVFG 106
>Y2770_PSEAE (Q9I073) Hypothetical protein PA2770| Length = 259 Score = 28.9 bits (63), Expect = 5.7 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = +3 Query: 357 IGVVQNHVMATDYYLVITDDDRT 425 +G+ + V+ TD YLV+ DD++T Sbjct: 133 LGIAEAEVLKTDDYLVVVDDEKT 155 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,091,297 Number of Sequences: 219361 Number of extensions: 1009346 Number of successful extensions: 2177 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2143 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2176 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
