Clone Name | rbasd23i19 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_470319.1| Oryza sativa (japonica cultivar-group), mRNA Length = 828 Score = 394 bits (199), Expect = e-107 Identities = 356/409 (87%), Gaps = 1/409 (0%) Strand = Plus / Minus Query: 28 agtacatgcgaaacttctcttgtggtgttctcaaagacttgttcagcaagcagggctcca 87 ||||||| ||||||||||| | | |||||||| |||||||||||||||| |||||||||| Sbjct: 663 agtacatccgaaacttctcct-tagtgttctcgaagacttgttcagcaatcagggctcca 605 Query: 88 ttcccatcggctcgcttaatctccatgttggccttctggtagaacccagttcctctcaga 147 || ||||| || ||| | ||||||| |||||||||||||||| | ||||||| |||| | Sbjct: 604 ttgccatctgcccgccttatctccaagttggccttctggtagtaagcagttcccctcaaa 545 Query: 148 gcatcagcaatgaagtcgncgaatccaatggcaatagcagcttctgccttggctccatac 207 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 544 gcatcagcaatgaagtcatcgaatccaatggcaatagcagcttctgccttggctccatac 485 Query: 208 accagcctcttgatccgggatagatgaacagccccaaaacacattgggcaaggttnacat 267 ||||||||||| ||||| |||||||| ||||| || ||||||||||||||||||| |||| Sbjct: 484 accagcctcttaatccgtgatagatgcacagcgccgaaacacattgggcaaggttcacat 425 Query: 268 gatgcgtacatttngcaatccgacagntcaatctttccaagctttttgcaagcctctctt 327 ||||| ||||||| || || |||| ||||| ||||||||||||||||||||||||||| Sbjct: 424 gatgcatacatttcacagtctgacaactcaatttttccaagctttttgcaagcctctctt 365 Query: 328 attgcagtgacttcagcatgtgcagttggatcggngttgttcagaaccatgttatggcaa 387 |||||||| ||||||||||| ||||||||||| | || | || |||||||||||||||| Sbjct: 364 attgcagttacttcagcatgcgcagttggatcagtgtaatccaaaaccatgttatggcaa 305 Query: 388 ccgactattacttggtnattacggacgacgaccgcaccaaatgggcctc 436 | |||| || | | ||||||||| || || ||||||||||| |||| Sbjct: 304 ctaactactatctcatcattacggacaacaactgcaccaaatggacctc 256
>dbj|AK073655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033047O14, full insert sequence Length = 827 Score = 394 bits (199), Expect = e-107 Identities = 356/409 (87%), Gaps = 1/409 (0%) Strand = Plus / Minus Query: 28 agtacatgcgaaacttctcttgtggtgttctcaaagacttgttcagcaagcagggctcca 87 ||||||| ||||||||||| | | |||||||| |||||||||||||||| |||||||||| Sbjct: 662 agtacatccgaaacttctcct-tagtgttctcgaagacttgttcagcaatcagggctcca 604 Query: 88 ttcccatcggctcgcttaatctccatgttggccttctggtagaacccagttcctctcaga 147 || ||||| || ||| | ||||||| |||||||||||||||| | ||||||| |||| | Sbjct: 603 ttgccatctgcccgccttatctccaagttggccttctggtagtaagcagttcccctcaaa 544 Query: 148 gcatcagcaatgaagtcgncgaatccaatggcaatagcagcttctgccttggctccatac 207 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 543 gcatcagcaatgaagtcatcgaatccaatggcaatagcagcttctgccttggctccatac 484 Query: 208 accagcctcttgatccgggatagatgaacagccccaaaacacattgggcaaggttnacat 267 ||||||||||| ||||| |||||||| ||||| || ||||||||||||||||||| |||| Sbjct: 483 accagcctcttaatccgtgatagatgcacagcgccgaaacacattgggcaaggttcacat 424 Query: 268 gatgcgtacatttngcaatccgacagntcaatctttccaagctttttgcaagcctctctt 327 ||||| ||||||| || || |||| ||||| ||||||||||||||||||||||||||| Sbjct: 423 gatgcatacatttcacagtctgacaactcaatttttccaagctttttgcaagcctctctt 364 Query: 328 attgcagtgacttcagcatgtgcagttggatcggngttgttcagaaccatgttatggcaa 387 |||||||| ||||||||||| ||||||||||| | || | || |||||||||||||||| Sbjct: 363 attgcagttacttcagcatgcgcagttggatcagtgtaatccaaaaccatgttatggcaa 304 Query: 388 ccgactattacttggtnattacggacgacgaccgcaccaaatgggcctc 436 | |||| || | | ||||||||| || || ||||||||||| |||| Sbjct: 303 ctaactactatctcatcattacggacaacaactgcaccaaatggacctc 255
>dbj|AK104068.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-F08, full insert sequence Length = 784 Score = 387 bits (195), Expect = e-104 Identities = 355/409 (86%), Gaps = 1/409 (0%) Strand = Plus / Minus Query: 28 agtacatgcgaaacttctcttgtggtgttctcaaagacttgttcagcaagcagggctcca 87 ||||||| ||||||||||| | | |||||||| |||||||||||||||| |||||||||| Sbjct: 662 agtacatccgaaacttctcct-tagtgttctcgaagacttgttcagcaatcagggctcca 604 Query: 88 ttcccatcggctcgcttaatctccatgttggccttctggtagaacccagttcctctcaga 147 || ||||| || ||| | ||||||| |||||||||||||||| | ||||||| |||| | Sbjct: 603 ttgccatctgcccgccttatctccaagttggccttctggtagtaagcagttcccctcaaa 544 Query: 148 gcatcagcaatgaagtcgncgaatccaatggcaatagcagcttctgccttggctccatac 207 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 543 gcatcagcaatgaagtcatcgaatccaatggcaatagcagcttctgccttggctccatac 484 Query: 208 accagcctcttgatccgggatagatgaacagccccaaaacacattgggcaaggttnacat 267 ||||||||||| ||||| |||||||| ||||| || ||||||||||||||||||| |||| Sbjct: 483 accagcctcttaatccgtgatagatgcacagcgccgaaacacattgggcaaggttcacat 424 Query: 268 gatgcgtacatttngcaatccgacagntcaatctttccaagctttttgcaagcctctctt 327 ||||| ||||||| || || |||| ||||| ||||||||||||||||||||||||||| Sbjct: 423 gatgcatacatttcacagtctgacaactcaatttttccaagctttttgcaagcctctctt 364 Query: 328 attgcagtgacttcagcatgtgcagttggatcggngttgttcagaaccatgttatggcaa 387 |||||||| ||||||||||| ||||||||||| | | | || |||||||||||||||| Sbjct: 363 attgcagttacttcagcatgcgcagttggatcagtataatccaaaaccatgttatggcaa 304 Query: 388 ccgactattacttggtnattacggacgacgaccgcaccaaatgggcctc 436 | |||| || | | ||||||||| || || ||||||||||| |||| Sbjct: 303 ctaactactatctcatcattacggacaacaactgcaccaaatggacctc 255
>dbj|AK100710.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115F20, full insert sequence Length = 2120 Score = 379 bits (191), Expect = e-102 Identities = 354/409 (86%), Gaps = 1/409 (0%) Strand = Plus / Minus Query: 28 agtacatgcgaaacttctcttgtggtgttctcaaagacttgttcagcaagcagggctcca 87 ||||||| |||||||||| | |||| |||||||||||||| || |||| |||||||||| Sbjct: 1933 agtacatctgaaacttctcct-tggtcttctcaaagacttgctctgcaatcagggctcca 1875 Query: 88 ttcccatcggctcgcttaatctccatgttggccttctggtagaacccagttcctctcaga 147 || ||||| || ||| ||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 1874 ttgccatcagccttcttgatctccatgttggccttctggtaaaacccagtgcctctcaga 1815 Query: 148 gcatcagcaatgaagtcgncgaatccaatggcaatagcagcttctgccttggctccatac 207 ||||| ||||||||||| | |||||||||||||| |||||||||||||||||||||||| Sbjct: 1814 gcatctgcaatgaagtcatcaaatccaatggcaatggcagcttctgccttggctccatac 1755 Query: 208 accagcctcttgatccgggatagatgaacagccccaaaacacattgggcaaggttnacat 267 |||||||||||||||||||| |||||||| || ||||| ||||||||||| || | ||| Sbjct: 1754 accagcctcttgatccgggagagatgaactgcaccaaagcacattgggcatggctcacaa 1695 Query: 268 gatgcgtacatttngcaatccgacagntcaatctttccaagctttttgcaagcctctctt 327 || ||||| |||| ||||| || || || || ||||| ||||||||||||||||||||| Sbjct: 1694 gacgcgtaaatttcacaatctgagagctcgatttttccgagctttttgcaagcctctctt 1635 Query: 328 attgcagtgacttcagcatgtgcagttggatcggngttgttcagaaccatgttatggcaa 387 |||||||| ||||||||||||||||||||||| | | |||||||||||||||||||| Sbjct: 1634 attgcagtcacttcagcatgtgcagttggatcagtatgcttcagaaccatgttatggcag 1575 Query: 388 ccgactattacttggtnattacggacgacgaccgcaccaaatgggcctc 436 | ||||| ||||| | ||||||||| ||||| || ||||| ||||||| Sbjct: 1574 ctgactactacttcatcattacggacaacgactgctccaaaggggcctc 1526
>dbj|AK103800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033146A16, full insert sequence Length = 1501 Score = 323 bits (163), Expect = 3e-85 Identities = 262/295 (88%), Gaps = 1/295 (0%) Strand = Plus / Minus Query: 28 agtacatgcgaaacttctcttgtggtgttctcaaagacttgttcagcaagcagggctcca 87 ||||||| ||||||||||| | | |||||||| |||||||||||||||| |||||||||| Sbjct: 1342 agtacatccgaaacttctcct-tagtgttctcgaagacttgttcagcaatcagggctcca 1284 Query: 88 ttcccatcggctcgcttaatctccatgttggccttctggtagaacccagttcctctcaga 147 || ||||| || ||| | ||||||| |||||||||||||||| | ||||||| |||| | Sbjct: 1283 ttgccatctgcccgccttatctccaagttggccttctggtagtaagcagttcccctcaaa 1224 Query: 148 gcatcagcaatgaagtcgncgaatccaatggcaatagcagcttctgccttggctccatac 207 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1223 gcatcagcaatgaagtcatcgaatccaatggcaatagcagcttctgccttggctccatac 1164 Query: 208 accagcctcttgatccgggatagatgaacagccccaaaacacattgggcaaggttnacat 267 ||||||||||| ||||| |||||||| ||||| || ||||||||||||||||||| |||| Sbjct: 1163 accagcctcttaatccgtgatagatgcacagcgccgaaacacattgggcaaggttcacat 1104 Query: 268 gatgcgtacatttngcaatccgacagntcaatctttccaagctttttgcaagcct 322 ||||| ||||||| || || |||| ||||| |||||||||||||||||||||| Sbjct: 1103 gatgcatacatttcacagtctgacaactcaatttttccaagctttttgcaagcct 1049 Score = 77.8 bits (39), Expect = 3e-11 Identities = 97/117 (82%) Strand = Plus / Minus Query: 320 cctctcttattgcagtgacttcagcatgtgcagttggatcggngttgttcagaaccatgt 379 |||||||||||||||| ||||||||||| ||||||||||| | || | || |||||||| Sbjct: 350 cctctcttattgcagttacttcagcatgcgcagttggatcagtgtaatccaaaaccatgt 291 Query: 380 tatggcaaccgactattacttggtnattacggacgacgaccgcaccaaatgggcctc 436 ||||||||| |||| || | | ||||||||| || || ||||||||||| |||| Sbjct: 290 tatggcaactaactactatctcatcattacggacaacaactgcaccaaatggacctc 234
>dbj|AK059133.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-H01, full insert sequence Length = 481 Score = 252 bits (127), Expect = 8e-64 Identities = 205/230 (89%), Gaps = 1/230 (0%) Strand = Plus / Minus Query: 28 agtacatgcgaaacttctcttgtggtgttctcaaagacttgttcagcaagcagggctcca 87 ||||||| |||||||||| | |||| |||||||||||||| || |||| |||||||||| Sbjct: 234 agtacatctgaaacttctcct-tggtcttctcaaagacttgctctgcaatcagggctcca 176 Query: 88 ttcccatcggctcgcttaatctccatgttggccttctggtagaacccagttcctctcaga 147 || ||||| || ||| ||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 175 ttgccatcagccttcttgatctccatgttggccttctggtaaaacccagtgcctctcaga 116 Query: 148 gcatcagcaatgaagtcgncgaatccaatggcaatagcagcttctgccttggctccatac 207 ||||| ||||||||||| | |||||||||||||| |||||||||||||||||||||||| Sbjct: 115 gcatctgcaatgaagtcatcaaatccaatggcaatggcagcttctgccttggctccatac 56 Query: 208 accagcctcttgatccgggatagatgaacagccccaaaacacattgggca 257 |||||||||||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 55 accagcctcttgatccgggagagatgaactgcaccaaagcacattgggca 6
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 220 bits (111), Expect = 3e-54 Identities = 171/190 (90%), Gaps = 1/190 (0%) Strand = Plus / Plus Query: 28 agtacatgcgaaacttctcttgtggtgttctcaaagacttgttcagcaagcagggctcca 87 ||||||| ||||||||||| | | |||||||| |||||||||||||||| |||||||||| Sbjct: 34738277 agtacatccgaaacttctcct-tagtgttctcgaagacttgttcagcaatcagggctcca 34738335 Query: 88 ttcccatcggctcgcttaatctccatgttggccttctggtagaacccagttcctctcaga 147 || ||||| || ||| | ||||||| |||||||||||||||| | ||||||| |||| | Sbjct: 34738336 ttgccatctgcccgccttatctccaagttggccttctggtagtaagcagttcccctcaaa 34738395 Query: 148 gcatcagcaatgaagtcgncgaatccaatggcaatagcagcttctgccttggctccatac 207 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 34738396 gcatcagcaatgaagtcatcgaatccaatggcaatagcagcttctgccttggctccatac 34738455 Query: 208 accagcctct 217 |||||||||| Sbjct: 34738456 accagcctct 34738465 Score = 107 bits (54), Expect = 3e-20 Identities = 90/103 (87%) Strand = Plus / Plus Query: 220 atccgggatagatgaacagccccaaaacacattgggcaaggttnacatgatgcgtacatt 279 ||||| |||||||| ||||| || ||||||||||||||||||| ||||||||| |||||| Sbjct: 34738551 atccgtgatagatgcacagcgccgaaacacattgggcaaggttcacatgatgcatacatt 34738610 Query: 280 tngcaatccgacagntcaatctttccaagctttttgcaagcct 322 | || || |||| ||||| |||||||||||||||||||||| Sbjct: 34738611 tcacagtctgacaactcaatttttccaagctttttgcaagcct 34738653 Score = 77.8 bits (39), Expect = 3e-11 Identities = 97/117 (82%) Strand = Plus / Plus Query: 320 cctctcttattgcagtgacttcagcatgtgcagttggatcggngttgttcagaaccatgt 379 |||||||||||||||| ||||||||||| ||||||||||| | || | || |||||||| Sbjct: 34739352 cctctcttattgcagttacttcagcatgcgcagttggatcagtgtaatccaaaaccatgt 34739411 Query: 380 tatggcaaccgactattacttggtnattacggacgacgaccgcaccaaatgggcctc 436 ||||||||| |||| || | | ||||||||| || || ||||||||||| |||| Sbjct: 34739412 tatggcaactaactactatctcatcattacggacaacaactgcaccaaatggacctc 34739468
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence Length = 164352 Score = 220 bits (111), Expect = 3e-54 Identities = 171/190 (90%), Gaps = 1/190 (0%) Strand = Plus / Minus Query: 28 agtacatgcgaaacttctcttgtggtgttctcaaagacttgttcagcaagcagggctcca 87 ||||||| ||||||||||| | | |||||||| |||||||||||||||| |||||||||| Sbjct: 124373 agtacatccgaaacttctcct-tagtgttctcgaagacttgttcagcaatcagggctcca 124315 Query: 88 ttcccatcggctcgcttaatctccatgttggccttctggtagaacccagttcctctcaga 147 || ||||| || ||| | ||||||| |||||||||||||||| | ||||||| |||| | Sbjct: 124314 ttgccatctgcccgccttatctccaagttggccttctggtagtaagcagttcccctcaaa 124255 Query: 148 gcatcagcaatgaagtcgncgaatccaatggcaatagcagcttctgccttggctccatac 207 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 124254 gcatcagcaatgaagtcatcgaatccaatggcaatagcagcttctgccttggctccatac 124195 Query: 208 accagcctct 217 |||||||||| Sbjct: 124194 accagcctct 124185 Score = 107 bits (54), Expect = 3e-20 Identities = 90/103 (87%) Strand = Plus / Minus Query: 220 atccgggatagatgaacagccccaaaacacattgggcaaggttnacatgatgcgtacatt 279 ||||| |||||||| ||||| || ||||||||||||||||||| ||||||||| |||||| Sbjct: 124099 atccgtgatagatgcacagcgccgaaacacattgggcaaggttcacatgatgcatacatt 124040 Query: 280 tngcaatccgacagntcaatctttccaagctttttgcaagcct 322 | || || |||| ||||| |||||||||||||||||||||| Sbjct: 124039 tcacagtctgacaactcaatttttccaagctttttgcaagcct 123997 Score = 77.8 bits (39), Expect = 3e-11 Identities = 97/117 (82%) Strand = Plus / Minus Query: 320 cctctcttattgcagtgacttcagcatgtgcagttggatcggngttgttcagaaccatgt 379 |||||||||||||||| ||||||||||| ||||||||||| | || | || |||||||| Sbjct: 123298 cctctcttattgcagttacttcagcatgcgcagttggatcagtgtaatccaaaaccatgt 123239 Query: 380 tatggcaaccgactattacttggtnattacggacgacgaccgcaccaaatgggcctc 436 ||||||||| |||| || | | ||||||||| || || ||||||||||| |||| Sbjct: 123238 tatggcaactaactactatctcatcattacggacaacaactgcaccaaatggacctc 123182
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 220 bits (111), Expect = 3e-54 Identities = 171/190 (90%), Gaps = 1/190 (0%) Strand = Plus / Plus Query: 28 agtacatgcgaaacttctcttgtggtgttctcaaagacttgttcagcaagcagggctcca 87 ||||||| ||||||||||| | | |||||||| |||||||||||||||| |||||||||| Sbjct: 34828349 agtacatccgaaacttctcct-tagtgttctcgaagacttgttcagcaatcagggctcca 34828407 Query: 88 ttcccatcggctcgcttaatctccatgttggccttctggtagaacccagttcctctcaga 147 || ||||| || ||| | ||||||| |||||||||||||||| | ||||||| |||| | Sbjct: 34828408 ttgccatctgcccgccttatctccaagttggccttctggtagtaagcagttcccctcaaa 34828467 Query: 148 gcatcagcaatgaagtcgncgaatccaatggcaatagcagcttctgccttggctccatac 207 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 34828468 gcatcagcaatgaagtcatcgaatccaatggcaatagcagcttctgccttggctccatac 34828527 Query: 208 accagcctct 217 |||||||||| Sbjct: 34828528 accagcctct 34828537 Score = 107 bits (54), Expect = 3e-20 Identities = 90/103 (87%) Strand = Plus / Plus Query: 220 atccgggatagatgaacagccccaaaacacattgggcaaggttnacatgatgcgtacatt 279 ||||| |||||||| ||||| || ||||||||||||||||||| ||||||||| |||||| Sbjct: 34828623 atccgtgatagatgcacagcgccgaaacacattgggcaaggttcacatgatgcatacatt 34828682 Query: 280 tngcaatccgacagntcaatctttccaagctttttgcaagcct 322 | || || |||| ||||| |||||||||||||||||||||| Sbjct: 34828683 tcacagtctgacaactcaatttttccaagctttttgcaagcct 34828725 Score = 77.8 bits (39), Expect = 3e-11 Identities = 97/117 (82%) Strand = Plus / Plus Query: 320 cctctcttattgcagtgacttcagcatgtgcagttggatcggngttgttcagaaccatgt 379 |||||||||||||||| ||||||||||| ||||||||||| | || | || |||||||| Sbjct: 34829424 cctctcttattgcagttacttcagcatgcgcagttggatcagtgtaatccaaaaccatgt 34829483 Query: 380 tatggcaaccgactattacttggtnattacggacgacgaccgcaccaaatgggcctc 436 ||||||||| |||| || | | ||||||||| || || ||||||||||| |||| Sbjct: 34829484 tatggcaactaactactatctcatcattacggacaacaactgcaccaaatggacctc 34829540
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 204 bits (103), Expect = 2e-49 Identities = 169/190 (88%), Gaps = 1/190 (0%) Strand = Plus / Minus Query: 28 agtacatgcgaaacttctcttgtggtgttctcaaagacttgttcagcaagcagggctcca 87 ||||||| |||||||||| | |||| |||||||||||||| || |||| |||||||||| Sbjct: 8110109 agtacatctgaaacttctcct-tggtcttctcaaagacttgctctgcaatcagggctcca 8110051 Query: 88 ttcccatcggctcgcttaatctccatgttggccttctggtagaacccagttcctctcaga 147 || ||||| || ||| ||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 8110050 ttgccatcagccttcttgatctccatgttggccttctggtaaaacccagtgcctctcaga 8109991 Query: 148 gcatcagcaatgaagtcgncgaatccaatggcaatagcagcttctgccttggctccatac 207 ||||| ||||||||||| | |||||||||||||| |||||||||||||||||||||||| Sbjct: 8109990 gcatctgcaatgaagtcatcaaatccaatggcaatggcagcttctgccttggctccatac 8109931 Query: 208 accagcctct 217 |||||||||| Sbjct: 8109930 accagcctct 8109921 Score = 109 bits (55), Expect = 8e-21 Identities = 101/117 (86%) Strand = Plus / Minus Query: 320 cctctcttattgcagtgacttcagcatgtgcagttggatcggngttgttcagaaccatgt 379 |||||||||||||||| ||||||||||||||||||||||| | | ||||||||||||| Sbjct: 8109580 cctctcttattgcagtcacttcagcatgtgcagttggatcagtatgcttcagaaccatgt 8109521 Query: 380 tatggcaaccgactattacttggtnattacggacgacgaccgcaccaaatgggcctc 436 ||||||| | ||||| ||||| | ||||||||| ||||| || ||||| ||||||| Sbjct: 8109520 tatggcagctgactactacttcatcattacggacaacgactgctccaaaggggcctc 8109464 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/107 (83%) Strand = Plus / Minus Query: 216 cttgatccgggatagatgaacagccccaaaacacattgggcaaggttnacatgatgcgta 275 |||||||||||| |||||||| || ||||| ||||||||||| || | ||| || ||||| Sbjct: 8109835 cttgatccgggagagatgaactgcaccaaagcacattgggcatggctcacaagacgcgta 8109776 Query: 276 catttngcaatccgacagntcaatctttccaagctttttgcaagcct 322 |||| ||||| || || || || ||||| |||||||||||||||| Sbjct: 8109775 aatttcacaatctgagagctcgatttttccgagctttttgcaagcct 8109729
>dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_C08 Length = 117923 Score = 204 bits (103), Expect = 2e-49 Identities = 169/190 (88%), Gaps = 1/190 (0%) Strand = Plus / Minus Query: 28 agtacatgcgaaacttctcttgtggtgttctcaaagacttgttcagcaagcagggctcca 87 ||||||| |||||||||| | |||| |||||||||||||| || |||| |||||||||| Sbjct: 43881 agtacatctgaaacttctcct-tggtcttctcaaagacttgctctgcaatcagggctcca 43823 Query: 88 ttcccatcggctcgcttaatctccatgttggccttctggtagaacccagttcctctcaga 147 || ||||| || ||| ||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 43822 ttgccatcagccttcttgatctccatgttggccttctggtaaaacccagtgcctctcaga 43763 Query: 148 gcatcagcaatgaagtcgncgaatccaatggcaatagcagcttctgccttggctccatac 207 ||||| ||||||||||| | |||||||||||||| |||||||||||||||||||||||| Sbjct: 43762 gcatctgcaatgaagtcatcaaatccaatggcaatggcagcttctgccttggctccatac 43703 Query: 208 accagcctct 217 |||||||||| Sbjct: 43702 accagcctct 43693 Score = 109 bits (55), Expect = 8e-21 Identities = 101/117 (86%) Strand = Plus / Minus Query: 320 cctctcttattgcagtgacttcagcatgtgcagttggatcggngttgttcagaaccatgt 379 |||||||||||||||| ||||||||||||||||||||||| | | ||||||||||||| Sbjct: 43352 cctctcttattgcagtcacttcagcatgtgcagttggatcagtatgcttcagaaccatgt 43293 Query: 380 tatggcaaccgactattacttggtnattacggacgacgaccgcaccaaatgggcctc 436 ||||||| | ||||| ||||| | ||||||||| ||||| || ||||| ||||||| Sbjct: 43292 tatggcagctgactactacttcatcattacggacaacgactgctccaaaggggcctc 43236 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/107 (83%) Strand = Plus / Minus Query: 216 cttgatccgggatagatgaacagccccaaaacacattgggcaaggttnacatgatgcgta 275 |||||||||||| |||||||| || ||||| ||||||||||| || | ||| || ||||| Sbjct: 43607 cttgatccgggagagatgaactgcaccaaagcacattgggcatggctcacaagacgcgta 43548 Query: 276 catttngcaatccgacagntcaatctttccaagctttttgcaagcct 322 |||| ||||| || || || || ||||| |||||||||||||||| Sbjct: 43547 aatttcacaatctgagagctcgatttttccgagctttttgcaagcct 43501
>gb|AY106462.1| Zea mays PCO083489 mRNA sequence Length = 616 Score = 200 bits (101), Expect = 3e-48 Identities = 187/217 (86%) Strand = Plus / Minus Query: 106 atctccatgttggccttctggtagaacccagttcctctcagagcatcagcaatgaagtcg 165 ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 297 atctccaagttggccttctggtagaacccagtgcctctcagagcatctgcaatgaagtca 238 Query: 166 ncgaatccaatggcaatagcagcttctgccttggctccatacaccagcctcttgatccgg 225 | ||||||||||| || ||||| ||||||||||| ||||| |||||||||||||| ||| Sbjct: 237 tcaaatccaatggcgatggcagcctctgccttggccccataaaccagcctcttgattcgg 178 Query: 226 gatagatgaacagccccaaaacacattgggcaaggttnacatgatgcgtacatttngcaa 285 || |||||||| || ||||| ||||||||||| || | || || ||||| |||| ||| Sbjct: 177 gagagatgaactgcaccaaagcacattgggcatggctcgcaggacgcgtaaatttcgcag 118 Query: 286 tccgacagntcaatctttccaagctttttgcaagcct 322 || || || ||||| || ||||||||||||||||||| Sbjct: 117 tctgagagctcaattttcccaagctttttgcaagcct 81
>gb|AF528565.1| Zea mays cultivar BSSS53 chromosome 4 clone BAC 072, complete sequence Length = 106246 Score = 153 bits (77), Expect = 6e-34 Identities = 103/112 (91%) Strand = Plus / Plus Query: 106 atctccatgttggccttctggtagaacccagttcctctcagagcatcagcaatgaagtcg 165 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 17159 atctccatgttggccttctggtagaacccagtgcctctcagagcatctgcaatgaagtcg 17218 Query: 166 ncgaatccaatggcaatagcagcttctgccttggctccatacaccagcctct 217 ||||||||||||| || ||||| || |||||||| ||||| |||||||||| Sbjct: 17219 tcgaatccaatggcgatggcagcctccgccttggccccataaaccagcctct 17270 Score = 56.0 bits (28), Expect = 1e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 320 cctctcttattgcagtgacttcagcatgtgcagttggatcggngttgttcagaaccatgt 379 ||||||| |||||||| ||||||||||| ||| | || || | || ||||||||||||| Sbjct: 17605 cctctctaattgcagttacttcagcatgcgcaatagggtcagtgtgcttcagaaccatgt 17664 Query: 380 tatggca 386 ||||||| Sbjct: 17665 tatggca 17671 Score = 44.1 bits (22), Expect = 0.38 Identities = 85/107 (79%) Strand = Plus / Plus Query: 216 cttgatccgggatagatgaacagccccaaaacacattgggcaaggttnacatgatgcgta 275 |||||| ||||| ||||||| || ||||| ||||||||||| || | || || ||||| Sbjct: 17364 cttgattcgggagagatgaagtgcaccaaagcacattgggcatggctcgcaggacgcgta 17423 Query: 276 catttngcaatccgacagntcaatctttccaagctttttgcaagcct 322 |||| || || || || || || || ||||||||||||||||||| Sbjct: 17424 aatttcacagtcagagagctcgattttcccaagctttttgcaagcct 17470
>gb|AF090447.2| Zea mays 22 kDa alpha zein gene cluster, complete sequence Length = 346296 Score = 153 bits (77), Expect = 6e-34 Identities = 103/112 (91%) Strand = Plus / Plus Query: 106 atctccatgttggccttctggtagaacccagttcctctcagagcatcagcaatgaagtcg 165 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 345996 atctccatgttggccttctggtagaacccagtgcctctcagagcatctgcaatgaagtcg 346055 Query: 166 ncgaatccaatggcaatagcagcttctgccttggctccatacaccagcctct 217 ||||||||||||| || ||||| || |||||||| ||||| |||||||||| Sbjct: 346056 tcgaatccaatggcgatggcagcctccgccttggccccataaaccagcctct 346107
>gb|BT013403.1| Lycopersicon esculentum clone 135717R, mRNA sequence Length = 789 Score = 105 bits (53), Expect = 1e-19 Identities = 118/140 (84%) Strand = Plus / Minus Query: 121 ttctggtagaacccagttcctctcagagcatcagcaatgaagtcgncgaatccaatggca 180 ||||| ||||| ||||| ||||| ||||| || |||||||| ||| | || ||||||||| Sbjct: 542 ttctgatagaatccagtacctctgagagcgtctgcaatgaaatcgtcaaacccaatggca 483 Query: 181 atagcagcttctgccttggctccatacaccagcctcttgatccgggatagatgaacagcc 240 || |||||||| || ||||||||||| |||| ||||||||| || |||||||| | ||| Sbjct: 482 attgcagcttcagctttggctccatataccaacctcttgatgcgtgatagatggatagca 423 Query: 241 ccaaaacacattgggcaagg 260 ||||| |||||||| ||||| Sbjct: 422 ccaaagcacattggacaagg 403
>gb|DQ191637.1| Solanum tuberosum unknown mRNA Length = 852 Score = 87.7 bits (44), Expect = 3e-14 Identities = 100/119 (84%) Strand = Plus / Minus Query: 133 ccagttcctctcagagcatcagcaatgaagtcgncgaatccaatggcaatagcagcttct 192 ||||| ||||| ||||| || |||||||| || |||| ||||||||||| |||||||| Sbjct: 521 ccagtacctctgagagcgtctgcaatgaaatcatcgaacccaatggcaattgcagcttca 462 Query: 193 gccttggctccatacaccagcctcttgatccgggatagatgaacagccccaaaacacat 251 || ||||||||||| |||| ||||||||| || |||||||| | ||| ||||| ||||| Sbjct: 461 gctttggctccatataccaacctcttgatgcgtgatagatggatagcaccaaagcacat 403
>emb|AJ006764.1|CAR6764 Cicer arietinum mRNA for putative cytidine or deoxycytidylate deaminase, partial Length = 833 Score = 79.8 bits (40), Expect = 7e-12 Identities = 230/295 (77%) Strand = Plus / Minus Query: 86 cattcccatcggctcgcttaatctccatgttggccttctggtagaacccagttcctctca 145 |||||||||| |||| |||||||||| | || ||||| ||||| || || |||| || Sbjct: 502 cattcccatcagctcttttaatctccagctgtgctttctgatagaatccggtacctcgca 443 Query: 146 gagcatcagcaatgaagtcgncgaatccaatggcaatagcagcttctgccttggctccat 205 ||||| ||||| || || |||| ||||| ||||| || || || ||||| ||||||| Sbjct: 442 atgcatccgcaataaaatcatcgaacccaatagcaattgctgcctcagccttcgctccat 383 Query: 206 acaccagcctcttgatccgggatagatgaacagccccaaaacacattgggcaaggttnac 265 | |||| ||||| || ||||| || || | || ||||| ||||| |||||||||| || Sbjct: 382 aaaccaatctcttaattcgggaaaggtggattgcaccaaagcacatggggcaaggttcac 323 Query: 266 atgatgcgtacatttngcaatccgacagntcaatctttccaagctttttgcaagcctctc 325 | || || || |||| ||||| || || || |||| ||||| || |||||||||| Sbjct: 322 aagaagcatatatttcacaatctgaaagttctatctgcttcagcttcttacaagcctctc 263 Query: 326 ttattgcagtgacttcagcatgtgcagttggatcggngttgttcagaaccatgtt 380 ||||||| ||||| |||||||| ||||||||||| | || |||||||||||||| Sbjct: 262 ttattgctgtgacctcagcatgagcagttggatcagtgtaattcagaaccatgtt 208
>ref|NM_122688.2| Arabidopsis thaliana hydrolase/ zinc ion binding AT5G28050 transcript variant AT5G28050.1 mRNA, complete cds Length = 1068 Score = 65.9 bits (33), Expect = 1e-07 Identities = 83/100 (83%) Strand = Plus / Minus Query: 121 ttctggtagaacccagttcctctcagagcatcagcaatgaagtcgncgaatccaatggca 180 |||||||| | ||| || ||||||| ||||||||| |||||||| | || || ||||| Sbjct: 680 ttctggtaaacccccgtgcctctcaaagcatcagctatgaagtcatcaaacccgatggct 621 Query: 181 atagcagcttctgccttggctccatacaccagcctcttga 220 ||||| ||||| || ||||||||||| |||| |||||||| Sbjct: 620 atagctgcttcggctttggctccataaaccaacctcttga 581 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 319 gcctctcttattgcagtgacttcagcatgtgcagttgg 356 |||||||| || |||||||||||||||||||||||||| Sbjct: 482 gcctctctaatggcagtgacttcagcatgtgcagttgg 445
>ref|NM_001036882.1| Arabidopsis thaliana hydrolase/ zinc ion binding AT5G28050 transcript variant AT5G28050.2 mRNA, complete cds Length = 1053 Score = 65.9 bits (33), Expect = 1e-07 Identities = 83/100 (83%) Strand = Plus / Minus Query: 121 ttctggtagaacccagttcctctcagagcatcagcaatgaagtcgncgaatccaatggca 180 |||||||| | ||| || ||||||| ||||||||| |||||||| | || || ||||| Sbjct: 664 ttctggtaaacccccgtgcctctcaaagcatcagctatgaagtcatcaaacccgatggct 605 Query: 181 atagcagcttctgccttggctccatacaccagcctcttga 220 ||||| ||||| || ||||||||||| |||| |||||||| Sbjct: 604 atagctgcttcggctttggctccataaaccaacctcttga 565 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 319 gcctctcttattgcagtgacttcagcatgtgcagttgg 356 |||||||| || |||||||||||||||||||||||||| Sbjct: 466 gcctctctaatggcagtgacttcagcatgtgcagttgg 429
>gb|AY133663.1| Arabidopsis thaliana AT5g28050/F15F15_120 mRNA, complete cds Length = 558 Score = 65.9 bits (33), Expect = 1e-07 Identities = 83/100 (83%) Strand = Plus / Minus Query: 121 ttctggtagaacccagttcctctcagagcatcagcaatgaagtcgncgaatccaatggca 180 |||||||| | ||| || ||||||| ||||||||| |||||||| | || || ||||| Sbjct: 464 ttctggtaaacccccgtgcctctcaaagcatcagctatgaagtcatcaaacccgatggct 405 Query: 181 atagcagcttctgccttggctccatacaccagcctcttga 220 ||||| ||||| || ||||||||||| |||| |||||||| Sbjct: 404 atagctgcttcggctttggctccataaaccaacctcttga 365 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 319 gcctctcttattgcagtgacttcagcatgtgcagttgg 356 |||||||| || |||||||||||||||||||||||||| Sbjct: 266 gcctctctaatggcagtgacttcagcatgtgcagttgg 229
>gb|AY039873.1| Arabidopsis thaliana AT5g28050/F15F15_120 mRNA, complete cds Length = 847 Score = 65.9 bits (33), Expect = 1e-07 Identities = 83/100 (83%) Strand = Plus / Minus Query: 121 ttctggtagaacccagttcctctcagagcatcagcaatgaagtcgncgaatccaatggca 180 |||||||| | ||| || ||||||| ||||||||| |||||||| | || || ||||| Sbjct: 529 ttctggtaaacccccgtgcctctcaaagcatcagctatgaagtcatcaaacccgatggct 470 Query: 181 atagcagcttctgccttggctccatacaccagcctcttga 220 ||||| ||||| || ||||||||||| |||| |||||||| Sbjct: 469 atagctgcttcggctttggctccataaaccaacctcttga 430 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 319 gcctctcttattgcagtgacttcagcatgtgcagttgg 356 |||||||| || |||||||||||||||||||||||||| Sbjct: 331 gcctctctaatggcagtgacttcagcatgtgcagttgg 294
>emb|BX832994.1|CNS0A22E Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL28ZG07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 769 Score = 65.9 bits (33), Expect = 1e-07 Identities = 83/100 (83%) Strand = Plus / Minus Query: 121 ttctggtagaacccagttcctctcagagcatcagcaatgaagtcgncgaatccaatggca 180 |||||||| | ||| || ||||||| ||||||||| |||||||| | || || ||||| Sbjct: 450 ttctggtaaacccccgtgcctctcaaagcatcagctatgaagtcatcaaacccgatggct 391 Query: 181 atagcagcttctgccttggctccatacaccagcctcttga 220 ||||| ||||| || ||||||||||| |||| |||||||| Sbjct: 390 atagctgcttcggctttggctccataaaccaacctcttga 351 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 319 gcctctcttattgcagtgacttcagcatgtgcagttgg 356 |||||||| || |||||||||||||||||||||||||| Sbjct: 252 gcctctctaatggcagtgacttcagcatgtgcagttgg 215
>emb|BX832218.1|CNS0A13V Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH59ZH09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 477 Score = 65.9 bits (33), Expect = 1e-07 Identities = 83/100 (83%) Strand = Plus / Minus Query: 121 ttctggtagaacccagttcctctcagagcatcagcaatgaagtcgncgaatccaatggca 180 |||||||| | ||| || ||||||| ||||||||| |||||||| | || || ||||| Sbjct: 136 ttctggtaaacccccgtgcctctcaaagcatcagctatgaagtcatcaaacccgatggct 77 Query: 181 atagcagcttctgccttggctccatacaccagcctcttga 220 ||||| ||||| || ||||||||||| |||| |||||||| Sbjct: 76 atagctgcttcggctttggctccataaaccaacctcttga 37
>emb|BX831632.1|CNS0A10W Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH1ZF11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1661 Score = 65.9 bits (33), Expect = 1e-07 Identities = 83/100 (83%) Strand = Plus / Minus Query: 121 ttctggtagaacccagttcctctcagagcatcagcaatgaagtcgncgaatccaatggca 180 |||||||| | ||| || ||||||| ||||||||| |||||||| | || || ||||| Sbjct: 1328 ttctggtaaacccccgtacctctcaaagcatcagctatgaagtcatcaaacccgatggct 1269 Query: 181 atagcagcttctgccttggctccatacaccagcctcttga 220 ||||| ||||| || ||||||||||| |||| |||||||| Sbjct: 1268 atagctgcttcggctttggctccataaaccaacctcttga 1229 Score = 44.1 bits (22), Expect = 0.38 Identities = 34/38 (89%) Strand = Plus / Minus Query: 319 gcctctcttattgcagtgacttcagcatgtgcagttgg 356 |||||||| || ||||| |||||||||||| ||||||| Sbjct: 1130 gcctctctaatggcagttacttcagcatgtacagttgg 1093
>emb|BX833523.1|CNS0A0BH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL5ZG10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 841 Score = 65.9 bits (33), Expect = 1e-07 Identities = 83/100 (83%) Strand = Plus / Minus Query: 121 ttctggtagaacccagttcctctcagagcatcagcaatgaagtcgncgaatccaatggca 180 |||||||| | ||| || ||||||| ||||||||| |||||||| | || || ||||| Sbjct: 521 ttctggtaaacccccgtccctctcaaagcatcagctatgaagtcatcaaacccgatggct 462 Query: 181 atagcagcttctgccttggctccatacaccagcctcttga 220 ||||| ||||| || ||||||||||| |||| |||||||| Sbjct: 461 atagctgcttcggctttggctccataaaccaacctcttga 422 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 319 gcctctcttattgcagtgacttcagcatgtgcagttgg 356 |||||||| || |||||||||||||||||||||||||| Sbjct: 323 gcctctctaatggcagtgacttcagcatgtgcagttgg 286
>gb|AY089136.1| Arabidopsis thaliana clone 37242 mRNA, complete sequence Length = 987 Score = 65.9 bits (33), Expect = 1e-07 Identities = 83/100 (83%) Strand = Plus / Minus Query: 121 ttctggtagaacccagttcctctcagagcatcagcaatgaagtcgncgaatccaatggca 180 |||||||| | ||| || ||||||| ||||||||| |||||||| | || || ||||| Sbjct: 679 ttctggtaaacccctgtgcctctcaaagcatcagctatgaagtcatcaaacccgatggct 620 Query: 181 atagcagcttctgccttggctccatacaccagcctcttga 220 ||||| ||||| || ||||||||||| |||| |||||||| Sbjct: 619 atagctgcttcggctttggctccataaaccaacctcttga 580 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 319 gcctctcttattgcagtgacttcagcatgtgcagttgg 356 |||||||| || || ||||||||||||||||||||||| Sbjct: 481 gcctctctaatggcggtgacttcagcatgtgcagttgg 444
>gb|AF458409.1|AF458409 Brassica oleracea deoxycytidine deaminase (DCTD1) mRNA, complete cds Length = 775 Score = 63.9 bits (32), Expect = 4e-07 Identities = 136/171 (79%) Strand = Plus / Minus Query: 50 tggtgttctcaaagacttgttcagcaagcagggctccattcccatcggctcgcttaatct 109 ||||||||| || ||||||||||||| | ||||||||||| || ||| ||| |||| Sbjct: 623 tggtgttctggaacacttgttcagcaatcgcagctccattcccgtctgctttctttatct 564 Query: 110 ccatgttggccttctggtagaacccagttcctctcagagcatcagcaatgaagtcgncga 169 ||| ||| | |||||||| | || ||||||||||| |||||||| |||||||| | | Sbjct: 563 ccaggttagatttctggtaaacaccggttcctctcagcgcatcagctatgaagtcatcaa 504 Query: 170 atccaatggcaatagcagcttctgccttggctccatacaccagcctcttga 220 | || |||||||| || ||||| || |||||||| || |||| ||||||| Sbjct: 503 acccgatggcaatggctgcttcagctttggctccgtataccaatctcttga 453
>gb|AF546189.1| Contiguous genomic DNA sequence comprising the 19-kDa-zein gene family from Zea mays, complete sequence Length = 116115 Score = 63.9 bits (32), Expect = 4e-07 Identities = 58/67 (86%) Strand = Plus / Minus Query: 320 cctctcttattgcagtgacttcagcatgtgcagttggatcggngttgttcagaaccatgt 379 ||||||| |||||||| ||||||||||| ||||| || || | || ||||||||||||| Sbjct: 4120 cctctctaattgcagttacttcagcatgcgcagtagggtcagtgtgcttcagaaccatgt 4061 Query: 380 tatggca 386 ||||||| Sbjct: 4060 tatggca 4054 Score = 52.0 bits (26), Expect = 0.002 Identities = 86/107 (80%) Strand = Plus / Minus Query: 216 cttgatccgggatagatgaacagccccaaaacacattgggcaaggttnacatgatgcgta 275 |||||| ||||| |||||||| || ||||| ||||||||||| || | || || ||||| Sbjct: 4361 cttgattcgggagagatgaactgcaccaaagcacattgggcatggctcgcaggacgcgta 4302 Query: 276 catttngcaatccgacagntcaatctttccaagctttttgcaagcct 322 |||| ||| || || || || || || || |||||||||||||||| Sbjct: 4301 aatttcgcagtcagagagctcgattttcccgagctttttgcaagcct 4255
>emb|BX833850.1|CNS0A0HI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL7ZC12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 891 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 319 gcctctcttattgcagtgacttcagcatgtgcagttgg 356 |||||||| || |||||||||||||||||||||||||| Sbjct: 415 gcctctctaatggcagtgacttcagcatgtgcagttgg 378 Score = 50.1 bits (25), Expect = 0.006 Identities = 81/100 (81%) Strand = Plus / Minus Query: 121 ttctggtagaacccagttcctctcagagcatcagcaatgaagtcgncgaatccaatggca 180 |||||||| | ||| || ||||||| ||||||||| ||||||| | || || ||||| Sbjct: 613 ttctggtaaacccccgtgcctctcaaagcatcagctatgaagtgatcaaacccgatggct 554 Query: 181 atagcagcttctgccttggctccatacaccagcctcttga 220 || || ||||| || ||||||||||| |||| |||||||| Sbjct: 553 atcgctgcttcggctttggctccataaaccaacctcttga 514
>gb|AC007627.3|AC007627 Genomic Sequence For Arabidopsis thaliana Clone F15F15, Chromosome V, complete sequence Length = 157000 Score = 60.0 bits (30), Expect = 6e-06 Identities = 80/97 (82%) Strand = Plus / Plus Query: 121 ttctggtagaacccagttcctctcagagcatcagcaatgaagtcgncgaatccaatggca 180 |||||||| | ||| || ||||||| ||||||||| |||||||| | || || ||||| Sbjct: 116895 ttctggtaaacccccgtgcctctcaaagcatcagctatgaagtcatcaaacccgatggct 116954 Query: 181 atagcagcttctgccttggctccatacaccagcctct 217 ||||| ||||| || ||||||||||| |||| ||||| Sbjct: 116955 atagctgcttcggctttggctccataaaccaacctct 116991 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 320 cctctcttattgcagtgacttcagcatgtgcagttgg 356 ||||||| || |||||||||||||||||||||||||| Sbjct: 117272 cctctctaatggcagtgacttcagcatgtgcagttgg 117308
>emb|BX833360.1|CNS0A222 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL47ZH03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 823 Score = 48.1 bits (24), Expect = 0.024 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand = Plus / Minus Query: 139 cctctcagagcatcagcaatgaagtcgncgaatcca-atggcaatagcagcttctgcctt 197 ||||||| ||||||||| |||||||| | || || ||||| ||||| ||||| || || Sbjct: 486 cctctcaaagcatcagctatgaagtcatcaaaccccgatggctatagctgcttcggcttt 427 Query: 198 ggctccatacaccagcctcttga 220 ||||||||| |||| |||||||| Sbjct: 426 ggctccataaaccaacctcttga 404 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Minus Query: 319 gcctctcttattgcagtgacttcagcatgtgc 350 |||||||| || |||||||||||||||||||| Sbjct: 304 gcctctctaatggcagtgacttcagcatgtgc 273
>gb|AC144852.3| Mus musculus BAC clone RP24-341K21 from chromosome 10, complete sequence Length = 169565 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 77462 tccatgttggccttctggtag 77442
>ref|XM_509167.1| PREDICTED: Pan troglodytes similar to kinesin family member 5A; kinesin, heavy chain, neuron-specific; spastic paraplegia 10 (autosomal dominant) (LOC452019), mRNA Length = 3279 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 3071 tccatgttggccttctggtag 3051
>ref|NM_004984.2| Homo sapiens kinesin family member 5A (KIF5A), mRNA Length = 3897 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 3195 tccatgttggccttctggtag 3175
>gb|BC058396.1| Mus musculus kinesin family member 5A, mRNA (cDNA clone MGC:67074 IMAGE:6824963), complete cds Length = 4021 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 3156 tccatgttggccttctggtag 3136
>ref|XM_588573.2| PREDICTED: Bos taurus similar to kinesin family member 5A, transcript variant 1 (LOC511273), mRNA Length = 3723 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 3255 tccatgttggccttctggtag 3235
>ref|XM_880163.1| PREDICTED: Bos taurus similar to kinesin family member 5A, transcript variant 2 (LOC511273), mRNA Length = 3768 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 3300 tccatgttggccttctggtag 3280
>ref|NM_001039000.1| Mus musculus kinesin family member 5A (Kif5a), transcript variant 2, mRNA Length = 6016 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 3148 tccatgttggccttctggtag 3128
>ref|NM_008447.2| Mus musculus kinesin family member 5A (Kif5a), transcript variant 1, mRNA Length = 4021 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 3156 tccatgttggccttctggtag 3136
>ref|XM_531648.2| PREDICTED: Canis familiaris similar to kinesin family member 5A, transcript variant 1 (LOC474416), mRNA Length = 3297 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 2987 tccatgttggccttctggtag 2967
>ref|XM_844709.1| PREDICTED: Canis familiaris similar to kinesin family member 5A, transcript variant 2 (LOC474416), mRNA Length = 3347 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 2987 tccatgttggccttctggtag 2967
>emb|X61435.1|MMKINESIN M.musculus mRNA for kinesin heavy chain Length = 3488 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 3219 tccatgttggccttctggtag 3199
>emb|CR859380.1| Pongo pygmaeus mRNA; cDNA DKFZp459M0928 (from clone DKFZp459M0928) Length = 3599 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 3213 tccatgttggccttctggtag 3193
>dbj|AK220479.1| Mus musculus mRNA for mKIAA4086 protein Length = 6295 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 3424 tccatgttggccttctggtag 3404
>emb|CR603244.1| full-length cDNA clone CS0DF036YE24 of Fetal brain of Homo sapiens (human) Length = 691 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 114 tccatgttggccttctggtag 94
>dbj|AK147352.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1018N18 product:kinesin family member 5A, full insert sequence Length = 6086 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 3216 tccatgttggccttctggtag 3196
>dbj|AK147707.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1110O15 product:kinesin family member 5A, full insert sequence Length = 6038 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 3170 tccatgttggccttctggtag 3150
>dbj|AK147660.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1103A17 product:kinesin family member 5A, full insert sequence Length = 6016 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 3148 tccatgttggccttctggtag 3128
>dbj|AB210045.1| Homo sapiens mRNA for KIF5A variant protein, partial cds, clone: ph00435 Length = 5584 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 3020 tccatgttggccttctggtag 3000
>gb|AC022506.38| Homo sapiens 12 BAC RP11-181L23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172136 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 26139 tccatgttggccttctggtag 26159
>gb|AF067179.1|AF067179 Mus musculus kinesin heavy chain (Kif5a) mRNA, complete cds Length = 3328 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 3146 tccatgttggccttctggtag 3126
>gb|U06698.1|HSU06698 Human neuronal kinesin heavy chain mRNA, complete cds Length = 3840 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 tccatgttggccttctggtag 129 ||||||||||||||||||||| Sbjct: 3135 tccatgttggccttctggtag 3115
>gb|AC169509.1| Mus musculus BAC clone RP23-137L8 from chromosome 16, complete sequence Length = 206061 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 agttcctctcagagcatcag 154 |||||||||||||||||||| Sbjct: 90594 agttcctctcagagcatcag 90613
>gb|BC075750.1| Danio rerio zgc:86619, mRNA (cDNA clone MGC:86619 IMAGE:6892683), complete cds Length = 1745 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tgttcagcaagcagggctcc 86 |||||||||||||||||||| Sbjct: 300 tgttcagcaagcagggctcc 281
>gb|AC115867.12| Mus musculus chromosome 6, clone RP24-326P23, complete sequence Length = 162067 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ttctcttgtggtgttctcaa 61 |||||||||||||||||||| Sbjct: 142928 ttctcttgtggtgttctcaa 142947
>gb|AC125162.4| Mus musculus BAC clone RP24-421D9 from chromosome 8, complete sequence Length = 206643 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 gaaacttctcttgtggtgtt 56 |||||||||||||||||||| Sbjct: 51854 gaaacttctcttgtggtgtt 51873
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 cgaatccaatggcaatagca 186 |||||||||||||||||||| Sbjct: 3496275 cgaatccaatggcaatagca 3496294
>emb|AL359380.16| Human DNA sequence from clone RP11-642N5 on chromosome 6 Contains the 3' end of a novel gene and the 5' end of the TINAG gene for tubulointerstitial nephritis antigen, complete sequence Length = 188826 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 cttctcttgtggtgttctca 60 |||||||||||||||||||| Sbjct: 77805 cttctcttgtggtgttctca 77824
>emb|AL049741.8|HSDJ15D12 Human DNA sequence from clone RP1-15D12 on chromosome 1q31.3-32.1 Contains the FHR-3 gene for complement factor H related 3 protein and the HFL1 gene for H factor (complement)-like 1 protein, complete sequence Length = 73320 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 aatagcagcttctgccttgg 199 |||||||||||||||||||| Sbjct: 34661 aatagcagcttctgccttgg 34680
>gb|AC164636.4| Mus musculus BAC clone RP23-70P16 from chromosome 6, complete sequence Length = 212096 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ttctcttgtggtgttctcaa 61 |||||||||||||||||||| Sbjct: 123889 ttctcttgtggtgttctcaa 123908
>emb|CR762390.5| Zebrafish DNA sequence from clone DKEY-204L11 in linkage group 5, complete sequence Length = 167774 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tgttcagcaagcagggctcc 86 |||||||||||||||||||| Sbjct: 78793 tgttcagcaagcagggctcc 78774
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ttcagcatgtgcagttggat 358 |||||||||||||||||||| Sbjct: 2217292 ttcagcatgtgcagttggat 2217311
>gb|AC107067.3| Homo sapiens BAC clone RP11-10L7 from 4, complete sequence Length = 112291 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 tcaatctttccaagcttttt 314 |||||||||||||||||||| Sbjct: 7019 tcaatctttccaagcttttt 7038
>ref|NM_001002722.1| Danio rerio zgc:86619 (zgc:86619), mRNA Length = 1745 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tgttcagcaagcagggctcc 86 |||||||||||||||||||| Sbjct: 300 tgttcagcaagcagggctcc 281
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 acttcagcatgtgcagttgg 356 |||||||||||||||||||| Sbjct: 408114 acttcagcatgtgcagttgg 408095
>emb|AL139418.9| Human DNA sequence from clone RP4-608O15 on chromosome 1 Contains the 5' end of FHR5 gene for factor H-related protein 5, the HFL3 gene for H factor (complement)-like 3 protein and the 3' end of the FHR-4 gene for the complement factor H-related protein 4, complete sequence Length = 83166 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 aatagcagcttctgccttgg 199 |||||||||||||||||||| Sbjct: 20367 aatagcagcttctgccttgg 20386
>emb|AL079352.3|CNS00M8V Human chromosome 14 DNA sequence BAC R-388G3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176833 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 agcttctgccttggctccat 205 |||||||||||||||||||| Sbjct: 80534 agcttctgccttggctccat 80515
>gb|AC113480.8| Mus musculus chromosome 13, clone RP23-309D8, complete sequence Length = 181457 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 70 tcagcaagcagggctccattccca 93 ||||||||||||||||| |||||| Sbjct: 21128 tcagcaagcagggctcccttccca 21105 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,207,445 Number of Sequences: 3902068 Number of extensions: 3207445 Number of successful extensions: 55481 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55293 Number of HSP's gapped (non-prelim): 167 length of query: 436 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 414 effective length of database: 17,147,199,772 effective search space: 7098940705608 effective search space used: 7098940705608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)