Clone Name | rbasd23i10 |
---|---|
Clone Library Name | barley_pub |
>gb|BT017484.1| Zea mays clone EL01N0412C09.c mRNA sequence Length = 1014 Score = 305 bits (154), Expect = 8e-80 Identities = 277/318 (87%) Strand = Plus / Minus Query: 242 gagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaagaggggcacatg 301 ||||||||||||||| || ||||||||||||||||||| ||| |||||||||| ||||| Sbjct: 826 gagggaagcgacgaagtgcatctggacctcctcgtcgatcgtcaagaagaggggaacatg 767 Query: 302 cacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtggtagtacacata 361 ||| ||||| || ||||||||||| |||||||||||||| ||||||||||||||||| || Sbjct: 766 cacgaacagggatttgatgccgtgttgctccgcgaaccgaagagagtggtagtacacgta 707 Query: 362 gttgcacacgaaccgcccggcgtcatccgaaggcatcacatcgtagcctgtctttcggag 421 |||||| || ||||| |||||||| | || |||| ||| ||||||||| |||| ||||| Sbjct: 706 gttgcatacaaaccgaccggcgtcgccggagggcaccacgtcgtagcctatcttccggag 647 Query: 422 tgacttggttaactctttcactggcagtgtagtctctcttgtccgtgagatgcttccgtc 481 |||||||||||| || || |||||||| ||||||||||| ||||||||||||||||| || Sbjct: 646 tgacttggttaattcattgactggcagggtagtctctctcgtccgtgagatgcttccatc 587 Query: 482 agatggaacaatagggactctctgaggcttccacccaagctcatctgggcagcggaaggt 541 ||| || ||||||||||| ||||| || ||||| || ||||||||||| || |||||||| Sbjct: 586 agagggcacaatagggaccctctgtggtttccatcctagctcatctggacaccggaaggt 527 Query: 542 ggcttcattcacagcttg 559 || ||||| |||||||| Sbjct: 526 agcctcattaacagcttg 509
>dbj|AK105043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A05, full insert sequence Length = 1012 Score = 280 bits (141), Expect = 5e-72 Identities = 285/333 (85%) Strand = Plus / Minus Query: 231 agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 290 |||||||||| |||||||| || ||||| |||||||||||||| |||| ||| |||| Sbjct: 877 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 818 Query: 291 aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 350 ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| | |||||| Sbjct: 817 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaaaagagtga 758 Query: 351 tagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcacatcgtagcct 410 || |||||||||||||| |||||||| || || || || || ||||| ||||| |||||| Sbjct: 757 taatacacatagttgcatacgaaccgaccagcatcgtctgatggcattacatcatagcct 698 Query: 411 gtctttcggagtgacttggttaactctttcactggcagtgtagtctctcttgtccgtgag 470 ||||| |||||||||||||||||||| || || || || |||||||||||||| |||||| Sbjct: 697 gtcttccggagtgacttggttaactcatttaccggaagggtagtctctcttgtgcgtgag 638 Query: 471 atgcttccgtcagatggaacaatagggactctctgaggcttccacccaagctcatctggg 530 || | ||| |||||||| ||||| || | |||||||| |||||||| ||||||||||| Sbjct: 637 attcctccatcagatggcacaatgggagccctctgaggtttccaccctagctcatctgga 578 Query: 531 cagcggaaggtggcttcattcacagcttgattc 563 || ||||||||||||||||| |||||||||||| Sbjct: 577 caacggaaggtggcttcattaacagcttgattc 545
>dbj|AK060069.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-H12, full insert sequence Length = 1012 Score = 280 bits (141), Expect = 5e-72 Identities = 285/333 (85%) Strand = Plus / Minus Query: 231 agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 290 |||||||||| |||||||| || ||||| |||||||||||||| |||| ||| |||| Sbjct: 877 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 818 Query: 291 aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 350 ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| | |||||| Sbjct: 817 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaaaagagtga 758 Query: 351 tagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcacatcgtagcct 410 || |||||||||||||| |||||||| || || || || || ||||| ||||| |||||| Sbjct: 757 taatacacatagttgcatacgaaccgaccagcatcgtctgatggcattacatcatagcct 698 Query: 411 gtctttcggagtgacttggttaactctttcactggcagtgtagtctctcttgtccgtgag 470 ||||| |||||||||||||||||||| || || || || |||||||||||||| |||||| Sbjct: 697 gtcttccggagtgacttggttaactcatttaccggaagggtagtctctcttgtgcgtgag 638 Query: 471 atgcttccgtcagatggaacaatagggactctctgaggcttccacccaagctcatctggg 530 || | ||| |||||||| ||||| || | |||||||| |||||||| ||||||||||| Sbjct: 637 attcctccatcagatggcacaatgggagccctctgaggtttccaccctagctcatctgga 578 Query: 531 cagcggaaggtggcttcattcacagcttgattc 563 || ||||||||||||||||| |||||||||||| Sbjct: 577 caacggaaggtggcttcattaacagcttgattc 545
>ref|XM_479284.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1227 Score = 274 bits (138), Expect = 3e-70 Identities = 297/350 (84%) Strand = Plus / Minus Query: 214 cctagttcaggctagcgagagcttcgacgagggaagcgacgaaatggatctggacctcct 273 ||||||||| | ||| |||||||| | |||||||| || ||||| ||||||||||||| Sbjct: 970 cctagttcaagacagcaagagcttcaagaagggaagcaacaaaatgcatctggacctcct 911 Query: 274 cgtcgactgtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccg 333 | |||| ||| |||| ||||||||||| ||||||||||| ||||||||||| ||||| | Sbjct: 910 catcgatcgtcaagaacaggggcacatgtacaaacagagatttgatgccgtgttgctctg 851 Query: 334 cgaaccggagagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaag 393 ||||||| ||||| || || |||||||||||||| || ||||| || || || || || | Sbjct: 850 cgaaccgaagagaatgataatacacatagttgcatacaaaccgaccagcatcgtctgatg 791 Query: 394 gcatcacatcgtagcctgtctttcggagtgacttggttaactctttcactggcagtgtag 453 |||| ||||||||||||||||| |||||||||||||| ||||| || || || || |||| Sbjct: 790 gcattacatcgtagcctgtcttccggagtgacttggtcaactcatttaccggaagcgtag 731 Query: 454 tctctcttgtccgtgagatgcttccgtcagatggaacaatagggactctctgaggcttcc 513 |||||||||||||||||||| ||| || ||||| |||||||| || |||||||| |||| Sbjct: 730 tctctcttgtccgtgagatggctccatccgatggtacaataggaaccctctgaggtttcc 671 Query: 514 acccaagctcatctgggcagcggaaggtggcttcattcacagcttgattc 563 |||| ||||||||||| || |||||||||||||| || ||||| |||||| Sbjct: 670 accctagctcatctggacaacggaaggtggcttcgttaacagcctgattc 621
>dbj|AK067207.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096M06, full insert sequence Length = 1228 Score = 274 bits (138), Expect = 3e-70 Identities = 297/350 (84%) Strand = Plus / Minus Query: 214 cctagttcaggctagcgagagcttcgacgagggaagcgacgaaatggatctggacctcct 273 ||||||||| | ||| |||||||| | |||||||| || ||||| ||||||||||||| Sbjct: 971 cctagttcaagacagcaagagcttcaagaagggaagcaacaaaatgcatctggacctcct 912 Query: 274 cgtcgactgtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccg 333 | |||| ||| |||| ||||||||||| ||||||||||| ||||||||||| ||||| | Sbjct: 911 catcgatcgtcaagaacaggggcacatgtacaaacagagatttgatgccgtgttgctctg 852 Query: 334 cgaaccggagagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaag 393 ||||||| ||||| || || |||||||||||||| || ||||| || || || || || | Sbjct: 851 cgaaccgaagagaatgataatacacatagttgcatacaaaccgaccagcatcgtctgatg 792 Query: 394 gcatcacatcgtagcctgtctttcggagtgacttggttaactctttcactggcagtgtag 453 |||| ||||||||||||||||| |||||||||||||| ||||| || || || || |||| Sbjct: 791 gcattacatcgtagcctgtcttccggagtgacttggtcaactcatttaccggaagcgtag 732 Query: 454 tctctcttgtccgtgagatgcttccgtcagatggaacaatagggactctctgaggcttcc 513 |||||||||||||||||||| ||| || ||||| |||||||| || |||||||| |||| Sbjct: 731 tctctcttgtccgtgagatggctccatccgatggtacaataggaaccctctgaggtttcc 672 Query: 514 acccaagctcatctgggcagcggaaggtggcttcattcacagcttgattc 563 |||| ||||||||||| || |||||||||||||| || ||||| |||||| Sbjct: 671 accctagctcatctggacaacggaaggtggcttcgttaacagcctgattc 622
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 186 bits (94), Expect = 5e-44 Identities = 178/206 (86%) Strand = Plus / Minus Query: 231 agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 290 |||||||||| |||||||| || ||||| |||||||||||||| |||| ||| |||| Sbjct: 13761893 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 13761834 Query: 291 aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 350 ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| |||||||| Sbjct: 13761833 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaagagagtga 13761774 Query: 351 tagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcacatcgtagcct 410 || |||||||||||||| |||||||| || || || || || ||||| ||||| |||||| Sbjct: 13761773 taatacacatagttgcatacgaaccgaccagcatcgtctgatggcattacatcatagcct 13761714 Query: 411 gtctttcggagtgacttggttaactc 436 ||||| |||||||||||||||||||| Sbjct: 13761713 gtcttccggagtgacttggttaactc 13761688 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 503 ctgaggcttccacccaagctcatctgggcagcggaaggtggcttcattcacagcttgatt 562 |||||| |||||||| ||||||||||| || ||||||||||||||||| ||||||||||| Sbjct: 13760855 ctgaggtttccaccctagctcatctggacaacggaaggtggcttcattaacagcttgatt 13760796 Query: 563 c 563 | Sbjct: 13760795 c 13760795
>dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1655_B12 Length = 132736 Score = 186 bits (94), Expect = 5e-44 Identities = 178/206 (86%) Strand = Plus / Minus Query: 231 agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 290 |||||||||| |||||||| || ||||| |||||||||||||| |||| ||| |||| Sbjct: 11377 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 11318 Query: 291 aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 350 ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| |||||||| Sbjct: 11317 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaagagagtga 11258 Query: 351 tagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcacatcgtagcct 410 || |||||||||||||| |||||||| || || || || || ||||| ||||| |||||| Sbjct: 11257 taatacacatagttgcatacgaaccgaccagcatcgtctgatggcattacatcatagcct 11198 Query: 411 gtctttcggagtgacttggttaactc 436 ||||| |||||||||||||||||||| Sbjct: 11197 gtcttccggagtgacttggttaactc 11172 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 503 ctgaggcttccacccaagctcatctgggcagcggaaggtggcttcattcacagcttgatt 562 |||||| |||||||| ||||||||||| || ||||||||||||||||| ||||||||||| Sbjct: 10339 ctgaggtttccaccctagctcatctggacaacggaaggtggcttcattaacagcttgatt 10280 Query: 563 c 563 | Sbjct: 10279 c 10279
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 172 bits (87), Expect = 8e-40 Identities = 189/223 (84%) Strand = Plus / Plus Query: 214 cctagttcaggctagcgagagcttcgacgagggaagcgacgaaatggatctggacctcct 273 ||||||||| | ||| |||||||| | |||||||| || ||||| ||||||||||||| Sbjct: 26565338 cctagttcaagacagcaagagcttcaagaagggaagcaacaaaatgcatctggacctcct 26565397 Query: 274 cgtcgactgtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccg 333 | |||| ||| |||| ||||||||||| ||||||||||| ||||||||||| ||||| | Sbjct: 26565398 catcgatcgtcaagaacaggggcacatgtacaaacagagatttgatgccgtgttgctctg 26565457 Query: 334 cgaaccggagagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaag 393 ||||||| ||||| || || |||||||||||||| || ||||| || || || || || | Sbjct: 26565458 cgaaccgaagagaatgataatacacatagttgcatacaaaccgaccagcatcgtctgatg 26565517 Query: 394 gcatcacatcgtagcctgtctttcggagtgacttggttaactc 436 |||| ||||||||||||||||| |||||||||||||| ||||| Sbjct: 26565518 gcattacatcgtagcctgtcttccggagtgacttggtcaactc 26565560 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 503 ctgaggcttccacccaagctcatctgggcagcggaaggtggcttcattcacagcttgatt 562 |||||| |||||||| ||||||||||| || |||||||||||||| || ||||| ||||| Sbjct: 26566352 ctgaggtttccaccctagctcatctggacaacggaaggtggcttcgttaacagcctgatt 26566411 Query: 563 c 563 | Sbjct: 26566412 c 26566412 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 455 ctctcttgtccgtgagatgcttccgtcagatggaacaatagggactctctg 505 ||||||||||||||||||| ||| || ||||| |||||||| || ||||| Sbjct: 26566227 ctctcttgtccgtgagatggctccatccgatggtacaataggaaccctctg 26566277
>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1340_C08 Length = 192167 Score = 172 bits (87), Expect = 8e-40 Identities = 189/223 (84%) Strand = Plus / Plus Query: 214 cctagttcaggctagcgagagcttcgacgagggaagcgacgaaatggatctggacctcct 273 ||||||||| | ||| |||||||| | |||||||| || ||||| ||||||||||||| Sbjct: 110609 cctagttcaagacagcaagagcttcaagaagggaagcaacaaaatgcatctggacctcct 110668 Query: 274 cgtcgactgtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccg 333 | |||| ||| |||| ||||||||||| ||||||||||| ||||||||||| ||||| | Sbjct: 110669 catcgatcgtcaagaacaggggcacatgtacaaacagagatttgatgccgtgttgctctg 110728 Query: 334 cgaaccggagagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaag 393 ||||||| ||||| || || |||||||||||||| || ||||| || || || || || | Sbjct: 110729 cgaaccgaagagaatgataatacacatagttgcatacaaaccgaccagcatcgtctgatg 110788 Query: 394 gcatcacatcgtagcctgtctttcggagtgacttggttaactc 436 |||| ||||||||||||||||| |||||||||||||| ||||| Sbjct: 110789 gcattacatcgtagcctgtcttccggagtgacttggtcaactc 110831 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 503 ctgaggcttccacccaagctcatctgggcagcggaaggtggcttcattcacagcttgatt 562 |||||| |||||||| ||||||||||| || |||||||||||||| || ||||| ||||| Sbjct: 111623 ctgaggtttccaccctagctcatctggacaacggaaggtggcttcgttaacagcctgatt 111682 Query: 563 c 563 | Sbjct: 111683 c 111683 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 455 ctctcttgtccgtgagatgcttccgtcagatggaacaatagggactctctg 505 ||||||||||||||||||| ||| || ||||| |||||||| || ||||| Sbjct: 111498 ctctcttgtccgtgagatggctccatccgatggtacaataggaaccctctg 111548
>dbj|AK099464.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023I17, full insert sequence Length = 1114 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 467 tgagatgcttccgtcagatggaacaatagggactctctgaggcttccacccaagctcatc 526 |||||||||||| ||||||| ||||||||| | ||||| || ||||| || |||||||| Sbjct: 624 tgagatgcttccatcagatgacacaataggggccctctgtggtttccatcccagctcatc 565 Query: 527 tgggcagcggaaggtggcttcattcacagcttgattc 563 ||||| |||||||| |||||||| | |||||||||| Sbjct: 564 agggcaacggaaggtagcttcattaatagcttgattc 528 Score = 79.8 bits (40), Expect = 9e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 282 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 341 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 809 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 750 Query: 342 agagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcaca 401 ||||| ||||| || ||||||||||| ||||| || || ||||||||||||||| |||| Sbjct: 749 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 690 Query: 402 tcgtagcc 409 ||| |||| Sbjct: 689 tcgaagcc 682
>dbj|AK062116.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C05, full insert sequence Length = 1164 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 467 tgagatgcttccgtcagatggaacaatagggactctctgaggcttccacccaagctcatc 526 |||||||||||| ||||||| ||||||||| | ||||| || ||||| || |||||||| Sbjct: 686 tgagatgcttccatcagatgacacaataggggccctctgtggtttccatcccagctcatc 627 Query: 527 tgggcagcggaaggtggcttcattcacagcttgattc 563 ||||| |||||||| |||||||| | |||||||||| Sbjct: 626 agggcaacggaaggtagcttcattaatagcttgattc 590 Score = 79.8 bits (40), Expect = 9e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 282 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 341 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 871 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 812 Query: 342 agagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcaca 401 ||||| ||||| || ||||||||||| ||||| || || ||||||||||||||| |||| Sbjct: 811 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 752 Query: 402 tcgtagcc 409 ||| |||| Sbjct: 751 tcgaagcc 744
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 79.8 bits (40), Expect = 9e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 282 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 341 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 14273048 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 14272989 Query: 342 agagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcaca 401 ||||| ||||| || ||||||||||| ||||| || || ||||||||||||||| |||| Sbjct: 14272988 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 14272929 Query: 402 tcgtagcc 409 ||| |||| Sbjct: 14272928 tcgaagcc 14272921
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 79.8 bits (40), Expect = 9e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 282 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 341 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 22277 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 22218 Query: 342 agagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcaca 401 ||||| ||||| || ||||||||||| ||||| || || ||||||||||||||| |||| Sbjct: 22217 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 22158 Query: 402 tcgtagcc 409 ||| |||| Sbjct: 22157 tcgaagcc 22150
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 79.8 bits (40), Expect = 9e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 282 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 341 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 84436 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 84377 Query: 342 agagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcaca 401 ||||| ||||| || ||||||||||| ||||| || || ||||||||||||||| |||| Sbjct: 84376 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 84317 Query: 402 tcgtagcc 409 ||| |||| Sbjct: 84316 tcgaagcc 84309
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 79.8 bits (40), Expect = 9e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 282 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 341 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 14268023 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 14267964 Query: 342 agagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcaca 401 ||||| ||||| || ||||||||||| ||||| || || ||||||||||||||| |||| Sbjct: 14267963 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 14267904 Query: 402 tcgtagcc 409 ||| |||| Sbjct: 14267903 tcgaagcc 14267896
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 166 aactttacatcttccaggtcaa 187 |||||||||||||||||||||| Sbjct: 8184579 aactttacatcttccaggtcaa 8184558
>dbj|AP005603.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1047A05 Length = 157517 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 166 aactttacatcttccaggtcaa 187 |||||||||||||||||||||| Sbjct: 152890 aactttacatcttccaggtcaa 152869
>dbj|AP004648.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1449_H02 Length = 117860 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 166 aactttacatcttccaggtcaa 187 |||||||||||||||||||||| Sbjct: 17261 aactttacatcttccaggtcaa 17240
>ref|XM_741731.1| Aspergillus fumigatus Af293 endo-1,4-beta-mannosidase (Afu7g01070) partial mRNA Length = 1434 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 cttgatgccgtgctgctccgc 334 ||||||||||||||||||||| Sbjct: 693 cttgatgccgtgctgctccgc 673
>gb|AC126605.4| Homo sapiens chromosome 15, clone RP11-606M5, complete sequence Length = 169125 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 538 aggtggcttcattcacagctt 558 ||||||||||||||||||||| Sbjct: 62830 aggtggcttcattcacagctt 62810
>gb|AC110291.6| Homo sapiens chromosome 15, clone RP11-379H8, complete sequence Length = 186812 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 538 aggtggcttcattcacagctt 558 ||||||||||||||||||||| Sbjct: 99011 aggtggcttcattcacagctt 99031
>gb|AC010724.6|AC010724 Homo sapiens BAC clone RP11-152F13 from 15, complete sequence Length = 157200 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 538 aggtggcttcattcacagctt 558 ||||||||||||||||||||| Sbjct: 4428 aggtggcttcattcacagctt 4408
>gb|AC040162.5| Homo sapiens chromosome 16 clone CTC-479C5, complete sequence Length = 217470 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 513 cacccaagctcatctgggcag 533 ||||||||||||||||||||| Sbjct: 204042 cacccaagctcatctgggcag 204022
>ref|NM_022675.1| Rattus norvegicus FK506 binding protein 1b (Fkbp1b), mRNA Length = 327 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 515 cccaagctcatctgggcagcg 535 ||||||||||||||||||||| Sbjct: 209 cccaagctcatctgggcagcg 189
>dbj|D86642.1| Rattus norvegicus mRNA for FK506-binding protein 12.6, complete cds Length = 327 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 515 cccaagctcatctgggcagcg 535 ||||||||||||||||||||| Sbjct: 209 cccaagctcatctgggcagcg 189
>ref|XM_523138.1| PREDICTED: Pan troglodytes similar to cytoplasmic polyadenylation element-binding protein (CPEB) (LOC467743), mRNA Length = 2097 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aggtggcttcattcacagct 557 |||||||||||||||||||| Sbjct: 1273 aggtggcttcattcacagct 1254
>ref|NM_030594.2| Homo sapiens cytoplasmic polyadenylation element binding protein 1 (CPEB1), mRNA Length = 2777 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aggtggcttcattcacagct 557 |||||||||||||||||||| Sbjct: 1194 aggtggcttcattcacagct 1175
>ref|XM_874055.1| PREDICTED: Bos taurus similar to 40S ribosomal protein S17, transcript variant 3 (LOC514174), mRNA Length = 2032 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aggtggcttcattcacagct 557 |||||||||||||||||||| Sbjct: 886 aggtggcttcattcacagct 867
>ref|XM_864691.1| PREDICTED: Bos taurus similar to 40S ribosomal protein S17, transcript variant 2 (LOC514174), mRNA Length = 1970 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aggtggcttcattcacagct 557 |||||||||||||||||||| Sbjct: 896 aggtggcttcattcacagct 877
>gb|BC050629.1| Homo sapiens cytoplasmic polyadenylation element binding protein 1, mRNA (cDNA clone MGC:60106 IMAGE:6047179), complete cds Length = 2117 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aggtggcttcattcacagct 557 |||||||||||||||||||| Sbjct: 984 aggtggcttcattcacagct 965
>gb|AC007361.2| Homo sapiens BAC clone RP11-144P23 from 7, complete sequence Length = 36465 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 tttttctctccccttaaata 95 |||||||||||||||||||| Sbjct: 1325 tttttctctccccttaaata 1306
>gb|BC035348.1| Homo sapiens cytoplasmic polyadenylation element binding protein 1, mRNA (cDNA clone MGC:34136 IMAGE:5195793), complete cds Length = 2080 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aggtggcttcattcacagct 557 |||||||||||||||||||| Sbjct: 905 aggtggcttcattcacagct 886
>ref|XM_500170.1| Yarrowia lipolytica CLIB122, YALI0A17578g predicted mRNA Length = 3702 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 gaaggcatcacatcgtagcc 409 |||||||||||||||||||| Sbjct: 2957 gaaggcatcacatcgtagcc 2938
>emb|CR860287.1| Pongo pygmaeus mRNA; cDNA DKFZp459E225 (from clone DKFZp459E225) Length = 3328 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aggtggcttcattcacagct 557 |||||||||||||||||||| Sbjct: 1118 aggtggcttcattcacagct 1099
>emb|CR591339.1| full-length cDNA clone CS0DC009YL21 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1567 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aggtggcttcattcacagct 557 |||||||||||||||||||| Sbjct: 499 aggtggcttcattcacagct 480
>dbj|AK023265.1| Homo sapiens cDNA FLJ13203 fis, clone NT2RP3004504, highly similar to M.musculus mRNA for CPEB protein Length = 1923 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aggtggcttcattcacagct 557 |||||||||||||||||||| Sbjct: 817 aggtggcttcattcacagct 798
>gb|AF329403.1|AF329403 Homo sapiens cytoplasmic polyadenylation element-binding protein short form (CPEB1) mRNA, complete cds Length = 2443 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aggtggcttcattcacagct 557 |||||||||||||||||||| Sbjct: 860 aggtggcttcattcacagct 841
>gb|AF329402.1|AF329402 Homo sapiens cytoplasmic polyadenylation element-binding protein long form (CPEB1) mRNA, complete cds Length = 2777 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aggtggcttcattcacagct 557 |||||||||||||||||||| Sbjct: 1194 aggtggcttcattcacagct 1175
>emb|BX649159.1|HSM809311 Homo sapiens mRNA; cDNA DKFZp686F0129 (from clone DKFZp686F0129) Length = 4973 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aggtggcttcattcacagct 557 |||||||||||||||||||| Sbjct: 2763 aggtggcttcattcacagct 2744
>gb|AC102602.9| Mus musculus chromosome 9, clone RP23-381L11, complete sequence Length = 253504 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 cacatgcacaaacagagact 315 |||||||||||||||||||| Sbjct: 186958 cacatgcacaaacagagact 186977
>emb|AL832156.1|HSM803463 Homo sapiens mRNA; cDNA DKFZp686F2014 (from clone DKFZp686F2014) Length = 2900 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aggtggcttcattcacagct 557 |||||||||||||||||||| Sbjct: 685 aggtggcttcattcacagct 666
>emb|AL954851.5| Zebrafish DNA sequence from clone CH211-280J3, complete sequence Length = 177221 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 286 agaagaggggcacatgcacaaacagaga 313 |||||||| |||||||||||||||||| Sbjct: 18089 agaagaggttcacatgcacaaacagaga 18116
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 gaaggcatcacatcgtagcc 409 |||||||||||||||||||| Sbjct: 1816198 gaaggcatcacatcgtagcc 1816179 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,897,202 Number of Sequences: 3902068 Number of extensions: 3897202 Number of successful extensions: 71212 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71029 Number of HSP's gapped (non-prelim): 183 length of query: 563 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 540 effective length of database: 17,143,297,704 effective search space: 9257380760160 effective search space used: 9257380760160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)