ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23i10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017484.1| Zea mays clone EL01N0412C09.c mRNA sequence 305 8e-80
2dbj|AK105043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 280 5e-72
3dbj|AK060069.1| Oryza sativa (japonica cultivar-group) cDNA clon... 280 5e-72
4ref|XM_479284.1| Oryza sativa (japonica cultivar-group), mRNA 274 3e-70
5dbj|AK067207.1| Oryza sativa (japonica cultivar-group) cDNA clon... 274 3e-70
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 186 5e-44
7dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic D... 186 5e-44
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 172 8e-40
9dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic D... 172 8e-40
10dbj|AK099464.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
11dbj|AK062116.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 80 9e-12
13gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 geno... 80 9e-12
14gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome... 80 9e-12
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 80 9e-12
16dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
17dbj|AP005603.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
18dbj|AP004648.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
19ref|XM_741731.1| Aspergillus fumigatus Af293 endo-1,4-beta-manno... 42 1.9
20gb|AC126605.4| Homo sapiens chromosome 15, clone RP11-606M5, com... 42 1.9
21gb|AC110291.6| Homo sapiens chromosome 15, clone RP11-379H8, com... 42 1.9
22gb|AC010724.6|AC010724 Homo sapiens BAC clone RP11-152F13 from 1... 42 1.9
23gb|AC040162.5| Homo sapiens chromosome 16 clone CTC-479C5, compl... 42 1.9
24ref|NM_022675.1| Rattus norvegicus FK506 binding protein 1b (Fkb... 42 1.9
25dbj|D86642.1| Rattus norvegicus mRNA for FK506-binding protein 1... 42 1.9
26ref|XM_523138.1| PREDICTED: Pan troglodytes similar to cytoplasm... 40 7.6
27ref|NM_030594.2| Homo sapiens cytoplasmic polyadenylation elemen... 40 7.6
28ref|XM_874055.1| PREDICTED: Bos taurus similar to 40S ribosomal ... 40 7.6
29ref|XM_864691.1| PREDICTED: Bos taurus similar to 40S ribosomal ... 40 7.6
30gb|BC050629.1| Homo sapiens cytoplasmic polyadenylation element ... 40 7.6
31gb|AC007361.2| Homo sapiens BAC clone RP11-144P23 from 7, comple... 40 7.6
32gb|BC035348.1| Homo sapiens cytoplasmic polyadenylation element ... 40 7.6
33ref|XM_500170.1| Yarrowia lipolytica CLIB122, YALI0A17578g predi... 40 7.6
34emb|CR860287.1| Pongo pygmaeus mRNA; cDNA DKFZp459E225 (from clo... 40 7.6
35emb|CR591339.1| full-length cDNA clone CS0DC009YL21 of Neuroblas... 40 7.6
36dbj|AK023265.1| Homo sapiens cDNA FLJ13203 fis, clone NT2RP30045... 40 7.6
37gb|AF329403.1|AF329403 Homo sapiens cytoplasmic polyadenylation ... 40 7.6
38gb|AF329402.1|AF329402 Homo sapiens cytoplasmic polyadenylation ... 40 7.6
39emb|BX649159.1|HSM809311 Homo sapiens mRNA; cDNA DKFZp686F0129 (... 40 7.6
40gb|AC102602.9| Mus musculus chromosome 9, clone RP23-381L11, com... 40 7.6
41emb|AL832156.1|HSM803463 Homo sapiens mRNA; cDNA DKFZp686F2014 (... 40 7.6
42emb|AL954851.5| Zebrafish DNA sequence from clone CH211-280J3, c... 40 7.6
43emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 7.6 
>gb|BT017484.1| Zea mays clone EL01N0412C09.c mRNA sequence
          Length = 1014

 Score =  305 bits (154), Expect = 8e-80
 Identities = 277/318 (87%)
 Strand = Plus / Minus

                                                                       
Query: 242 gagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaagaggggcacatg 301
           ||||||||||||||| || |||||||||||||||||||  ||| |||||||||| |||||
Sbjct: 826 gagggaagcgacgaagtgcatctggacctcctcgtcgatcgtcaagaagaggggaacatg 767

                                                                       
Query: 302 cacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtggtagtacacata 361
           ||| ||||| || ||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct: 766 cacgaacagggatttgatgccgtgttgctccgcgaaccgaagagagtggtagtacacgta 707

                                                                       
Query: 362 gttgcacacgaaccgcccggcgtcatccgaaggcatcacatcgtagcctgtctttcggag 421
           |||||| || ||||| ||||||||  | || |||| ||| ||||||||| |||| |||||
Sbjct: 706 gttgcatacaaaccgaccggcgtcgccggagggcaccacgtcgtagcctatcttccggag 647

                                                                       
Query: 422 tgacttggttaactctttcactggcagtgtagtctctcttgtccgtgagatgcttccgtc 481
           |||||||||||| || || |||||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 646 tgacttggttaattcattgactggcagggtagtctctctcgtccgtgagatgcttccatc 587

                                                                       
Query: 482 agatggaacaatagggactctctgaggcttccacccaagctcatctgggcagcggaaggt 541
           ||| || ||||||||||| ||||| || ||||| || ||||||||||| || ||||||||
Sbjct: 586 agagggcacaatagggaccctctgtggtttccatcctagctcatctggacaccggaaggt 527

                             
Query: 542 ggcttcattcacagcttg 559
            || ||||| ||||||||
Sbjct: 526 agcctcattaacagcttg 509
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>dbj|AK105043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A05, full
           insert sequence
          Length = 1012

 Score =  280 bits (141), Expect = 5e-72
 Identities = 285/333 (85%)
 Strand = Plus / Minus

                                                                       
Query: 231 agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 290
           ||||||||||  |||||||| || ||||| |||||||||||||| ||||  ||| |||| 
Sbjct: 877 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 818

                                                                       
Query: 291 aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 350
           ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| | |||||| 
Sbjct: 817 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaaaagagtga 758

                                                                       
Query: 351 tagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcacatcgtagcct 410
           || |||||||||||||| |||||||| || || || || || ||||| ||||| ||||||
Sbjct: 757 taatacacatagttgcatacgaaccgaccagcatcgtctgatggcattacatcatagcct 698

                                                                       
Query: 411 gtctttcggagtgacttggttaactctttcactggcagtgtagtctctcttgtccgtgag 470
           ||||| |||||||||||||||||||| || || || || |||||||||||||| ||||||
Sbjct: 697 gtcttccggagtgacttggttaactcatttaccggaagggtagtctctcttgtgcgtgag 638

                                                                       
Query: 471 atgcttccgtcagatggaacaatagggactctctgaggcttccacccaagctcatctggg 530
           || | ||| |||||||| ||||| ||  | |||||||| |||||||| ||||||||||| 
Sbjct: 637 attcctccatcagatggcacaatgggagccctctgaggtttccaccctagctcatctgga 578

                                            
Query: 531 cagcggaaggtggcttcattcacagcttgattc 563
           || ||||||||||||||||| ||||||||||||
Sbjct: 577 caacggaaggtggcttcattaacagcttgattc 545
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>dbj|AK060069.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-H12, full
           insert sequence
          Length = 1012

 Score =  280 bits (141), Expect = 5e-72
 Identities = 285/333 (85%)
 Strand = Plus / Minus

                                                                       
Query: 231 agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 290
           ||||||||||  |||||||| || ||||| |||||||||||||| ||||  ||| |||| 
Sbjct: 877 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 818

                                                                       
Query: 291 aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 350
           ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| | |||||| 
Sbjct: 817 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaaaagagtga 758

                                                                       
Query: 351 tagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcacatcgtagcct 410
           || |||||||||||||| |||||||| || || || || || ||||| ||||| ||||||
Sbjct: 757 taatacacatagttgcatacgaaccgaccagcatcgtctgatggcattacatcatagcct 698

                                                                       
Query: 411 gtctttcggagtgacttggttaactctttcactggcagtgtagtctctcttgtccgtgag 470
           ||||| |||||||||||||||||||| || || || || |||||||||||||| ||||||
Sbjct: 697 gtcttccggagtgacttggttaactcatttaccggaagggtagtctctcttgtgcgtgag 638

                                                                       
Query: 471 atgcttccgtcagatggaacaatagggactctctgaggcttccacccaagctcatctggg 530
           || | ||| |||||||| ||||| ||  | |||||||| |||||||| ||||||||||| 
Sbjct: 637 attcctccatcagatggcacaatgggagccctctgaggtttccaccctagctcatctgga 578

                                            
Query: 531 cagcggaaggtggcttcattcacagcttgattc 563
           || ||||||||||||||||| ||||||||||||
Sbjct: 577 caacggaaggtggcttcattaacagcttgattc 545
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>ref|XM_479284.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1227

 Score =  274 bits (138), Expect = 3e-70
 Identities = 297/350 (84%)
 Strand = Plus / Minus

                                                                       
Query: 214 cctagttcaggctagcgagagcttcgacgagggaagcgacgaaatggatctggacctcct 273
           ||||||||| |  ||| |||||||| |  |||||||| || ||||| |||||||||||||
Sbjct: 970 cctagttcaagacagcaagagcttcaagaagggaagcaacaaaatgcatctggacctcct 911

                                                                       
Query: 274 cgtcgactgtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccg 333
           | ||||  ||| |||| ||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct: 910 catcgatcgtcaagaacaggggcacatgtacaaacagagatttgatgccgtgttgctctg 851

                                                                       
Query: 334 cgaaccggagagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaag 393
           ||||||| ||||| || || |||||||||||||| || ||||| || || || || || |
Sbjct: 850 cgaaccgaagagaatgataatacacatagttgcatacaaaccgaccagcatcgtctgatg 791

                                                                       
Query: 394 gcatcacatcgtagcctgtctttcggagtgacttggttaactctttcactggcagtgtag 453
           |||| ||||||||||||||||| |||||||||||||| ||||| || || || || ||||
Sbjct: 790 gcattacatcgtagcctgtcttccggagtgacttggtcaactcatttaccggaagcgtag 731

                                                                       
Query: 454 tctctcttgtccgtgagatgcttccgtcagatggaacaatagggactctctgaggcttcc 513
           ||||||||||||||||||||  ||| || ||||| |||||||| || |||||||| ||||
Sbjct: 730 tctctcttgtccgtgagatggctccatccgatggtacaataggaaccctctgaggtttcc 671

                                                             
Query: 514 acccaagctcatctgggcagcggaaggtggcttcattcacagcttgattc 563
           |||| ||||||||||| || |||||||||||||| || ||||| ||||||
Sbjct: 670 accctagctcatctggacaacggaaggtggcttcgttaacagcctgattc 621
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>dbj|AK067207.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096M06, full
           insert sequence
          Length = 1228

 Score =  274 bits (138), Expect = 3e-70
 Identities = 297/350 (84%)
 Strand = Plus / Minus

                                                                       
Query: 214 cctagttcaggctagcgagagcttcgacgagggaagcgacgaaatggatctggacctcct 273
           ||||||||| |  ||| |||||||| |  |||||||| || ||||| |||||||||||||
Sbjct: 971 cctagttcaagacagcaagagcttcaagaagggaagcaacaaaatgcatctggacctcct 912

                                                                       
Query: 274 cgtcgactgtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccg 333
           | ||||  ||| |||| ||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct: 911 catcgatcgtcaagaacaggggcacatgtacaaacagagatttgatgccgtgttgctctg 852

                                                                       
Query: 334 cgaaccggagagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaag 393
           ||||||| ||||| || || |||||||||||||| || ||||| || || || || || |
Sbjct: 851 cgaaccgaagagaatgataatacacatagttgcatacaaaccgaccagcatcgtctgatg 792

                                                                       
Query: 394 gcatcacatcgtagcctgtctttcggagtgacttggttaactctttcactggcagtgtag 453
           |||| ||||||||||||||||| |||||||||||||| ||||| || || || || ||||
Sbjct: 791 gcattacatcgtagcctgtcttccggagtgacttggtcaactcatttaccggaagcgtag 732

                                                                       
Query: 454 tctctcttgtccgtgagatgcttccgtcagatggaacaatagggactctctgaggcttcc 513
           ||||||||||||||||||||  ||| || ||||| |||||||| || |||||||| ||||
Sbjct: 731 tctctcttgtccgtgagatggctccatccgatggtacaataggaaccctctgaggtttcc 672

                                                             
Query: 514 acccaagctcatctgggcagcggaaggtggcttcattcacagcttgattc 563
           |||| ||||||||||| || |||||||||||||| || ||||| ||||||
Sbjct: 671 accctagctcatctggacaacggaaggtggcttcgttaacagcctgattc 622
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  186 bits (94), Expect = 5e-44
 Identities = 178/206 (86%)
 Strand = Plus / Minus

                                                                            
Query: 231      agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 290
                ||||||||||  |||||||| || ||||| |||||||||||||| ||||  ||| |||| 
Sbjct: 13761893 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 13761834

                                                                            
Query: 291      aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 350
                ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| |||||||| 
Sbjct: 13761833 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaagagagtga 13761774

                                                                            
Query: 351      tagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcacatcgtagcct 410
                || |||||||||||||| |||||||| || || || || || ||||| ||||| ||||||
Sbjct: 13761773 taatacacatagttgcatacgaaccgaccagcatcgtctgatggcattacatcatagcct 13761714

                                          
Query: 411      gtctttcggagtgacttggttaactc 436
                ||||| ||||||||||||||||||||
Sbjct: 13761713 gtcttccggagtgacttggttaactc 13761688



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                            
Query: 503      ctgaggcttccacccaagctcatctgggcagcggaaggtggcttcattcacagcttgatt 562
                |||||| |||||||| ||||||||||| || ||||||||||||||||| |||||||||||
Sbjct: 13760855 ctgaggtttccaccctagctcatctggacaacggaaggtggcttcattaacagcttgatt 13760796

                 
Query: 563      c 563
                |
Sbjct: 13760795 c 13760795
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>dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1655_B12
          Length = 132736

 Score =  186 bits (94), Expect = 5e-44
 Identities = 178/206 (86%)
 Strand = Plus / Minus

                                                                         
Query: 231   agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 290
             ||||||||||  |||||||| || ||||| |||||||||||||| ||||  ||| |||| 
Sbjct: 11377 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 11318

                                                                         
Query: 291   aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 350
             ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| |||||||| 
Sbjct: 11317 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaagagagtga 11258

                                                                         
Query: 351   tagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcacatcgtagcct 410
             || |||||||||||||| |||||||| || || || || || ||||| ||||| ||||||
Sbjct: 11257 taatacacatagttgcatacgaaccgaccagcatcgtctgatggcattacatcatagcct 11198

                                       
Query: 411   gtctttcggagtgacttggttaactc 436
             ||||| ||||||||||||||||||||
Sbjct: 11197 gtcttccggagtgacttggttaactc 11172



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                         
Query: 503   ctgaggcttccacccaagctcatctgggcagcggaaggtggcttcattcacagcttgatt 562
             |||||| |||||||| ||||||||||| || ||||||||||||||||| |||||||||||
Sbjct: 10339 ctgaggtttccaccctagctcatctggacaacggaaggtggcttcattaacagcttgatt 10280

              
Query: 563   c 563
             |
Sbjct: 10279 c 10279
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  172 bits (87), Expect = 8e-40
 Identities = 189/223 (84%)
 Strand = Plus / Plus

                                                                            
Query: 214      cctagttcaggctagcgagagcttcgacgagggaagcgacgaaatggatctggacctcct 273
                ||||||||| |  ||| |||||||| |  |||||||| || ||||| |||||||||||||
Sbjct: 26565338 cctagttcaagacagcaagagcttcaagaagggaagcaacaaaatgcatctggacctcct 26565397

                                                                            
Query: 274      cgtcgactgtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccg 333
                | ||||  ||| |||| ||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct: 26565398 catcgatcgtcaagaacaggggcacatgtacaaacagagatttgatgccgtgttgctctg 26565457

                                                                            
Query: 334      cgaaccggagagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaag 393
                ||||||| ||||| || || |||||||||||||| || ||||| || || || || || |
Sbjct: 26565458 cgaaccgaagagaatgataatacacatagttgcatacaaaccgaccagcatcgtctgatg 26565517

                                                           
Query: 394      gcatcacatcgtagcctgtctttcggagtgacttggttaactc 436
                |||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 26565518 gcattacatcgtagcctgtcttccggagtgacttggtcaactc 26565560



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                            
Query: 503      ctgaggcttccacccaagctcatctgggcagcggaaggtggcttcattcacagcttgatt 562
                |||||| |||||||| ||||||||||| || |||||||||||||| || ||||| |||||
Sbjct: 26566352 ctgaggtttccaccctagctcatctggacaacggaaggtggcttcgttaacagcctgatt 26566411

                 
Query: 563      c 563
                |
Sbjct: 26566412 c 26566412



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                   
Query: 455      ctctcttgtccgtgagatgcttccgtcagatggaacaatagggactctctg 505
                |||||||||||||||||||  ||| || ||||| |||||||| || |||||
Sbjct: 26566227 ctctcttgtccgtgagatggctccatccgatggtacaataggaaccctctg 26566277
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>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1340_C08
          Length = 192167

 Score =  172 bits (87), Expect = 8e-40
 Identities = 189/223 (84%)
 Strand = Plus / Plus

                                                                          
Query: 214    cctagttcaggctagcgagagcttcgacgagggaagcgacgaaatggatctggacctcct 273
              ||||||||| |  ||| |||||||| |  |||||||| || ||||| |||||||||||||
Sbjct: 110609 cctagttcaagacagcaagagcttcaagaagggaagcaacaaaatgcatctggacctcct 110668

                                                                          
Query: 274    cgtcgactgtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccg 333
              | ||||  ||| |||| ||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct: 110669 catcgatcgtcaagaacaggggcacatgtacaaacagagatttgatgccgtgttgctctg 110728

                                                                          
Query: 334    cgaaccggagagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaag 393
              ||||||| ||||| || || |||||||||||||| || ||||| || || || || || |
Sbjct: 110729 cgaaccgaagagaatgataatacacatagttgcatacaaaccgaccagcatcgtctgatg 110788

                                                         
Query: 394    gcatcacatcgtagcctgtctttcggagtgacttggttaactc 436
              |||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 110789 gcattacatcgtagcctgtcttccggagtgacttggtcaactc 110831



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                          
Query: 503    ctgaggcttccacccaagctcatctgggcagcggaaggtggcttcattcacagcttgatt 562
              |||||| |||||||| ||||||||||| || |||||||||||||| || ||||| |||||
Sbjct: 111623 ctgaggtttccaccctagctcatctggacaacggaaggtggcttcgttaacagcctgatt 111682

               
Query: 563    c 563
              |
Sbjct: 111683 c 111683



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                 
Query: 455    ctctcttgtccgtgagatgcttccgtcagatggaacaatagggactctctg 505
              |||||||||||||||||||  ||| || ||||| |||||||| || |||||
Sbjct: 111498 ctctcttgtccgtgagatggctccatccgatggtacaataggaaccctctg 111548
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>dbj|AK099464.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023I17, full
           insert sequence
          Length = 1114

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                       
Query: 467 tgagatgcttccgtcagatggaacaatagggactctctgaggcttccacccaagctcatc 526
           |||||||||||| |||||||  ||||||||| | ||||| || ||||| || ||||||||
Sbjct: 624 tgagatgcttccatcagatgacacaataggggccctctgtggtttccatcccagctcatc 565

                                                
Query: 527 tgggcagcggaaggtggcttcattcacagcttgattc 563
            ||||| |||||||| |||||||| | ||||||||||
Sbjct: 564 agggcaacggaaggtagcttcattaatagcttgattc 528



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                       
Query: 282 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 341
           |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || |||||||  
Sbjct: 809 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 750

                                                                       
Query: 342 agagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcaca 401
           ||||| ||||| || ||||||||||| ||||| || || |||||||||||||||  ||||
Sbjct: 749 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 690

                   
Query: 402 tcgtagcc 409
           ||| ||||
Sbjct: 689 tcgaagcc 682
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>dbj|AK062116.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C05, full
           insert sequence
          Length = 1164

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                       
Query: 467 tgagatgcttccgtcagatggaacaatagggactctctgaggcttccacccaagctcatc 526
           |||||||||||| |||||||  ||||||||| | ||||| || ||||| || ||||||||
Sbjct: 686 tgagatgcttccatcagatgacacaataggggccctctgtggtttccatcccagctcatc 627

                                                
Query: 527 tgggcagcggaaggtggcttcattcacagcttgattc 563
            ||||| |||||||| |||||||| | ||||||||||
Sbjct: 626 agggcaacggaaggtagcttcattaatagcttgattc 590



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                       
Query: 282 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 341
           |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || |||||||  
Sbjct: 871 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 812

                                                                       
Query: 342 agagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcaca 401
           ||||| ||||| || ||||||||||| ||||| || || |||||||||||||||  ||||
Sbjct: 811 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 752

                   
Query: 402 tcgtagcc 409
           ||| ||||
Sbjct: 751 tcgaagcc 744
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                            
Query: 282      gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 341
                |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || |||||||  
Sbjct: 14273048 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 14272989

                                                                            
Query: 342      agagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcaca 401
                ||||| ||||| || ||||||||||| ||||| || || |||||||||||||||  ||||
Sbjct: 14272988 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 14272929

                        
Query: 402      tcgtagcc 409
                ||| ||||
Sbjct: 14272928 tcgaagcc 14272921
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>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete
             sequence
          Length = 158714

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                         
Query: 282   gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 341
             |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || |||||||  
Sbjct: 22277 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 22218

                                                                         
Query: 342   agagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcaca 401
             ||||| ||||| || ||||||||||| ||||| || || |||||||||||||||  ||||
Sbjct: 22217 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 22158

                     
Query: 402   tcgtagcc 409
             ||| ||||
Sbjct: 22157 tcgaagcc 22150
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>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNAb0012F18, complete sequence
          Length = 122159

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                         
Query: 282   gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 341
             |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || |||||||  
Sbjct: 84436 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 84377

                                                                         
Query: 342   agagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcaca 401
             ||||| ||||| || ||||||||||| ||||| || || |||||||||||||||  ||||
Sbjct: 84376 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 84317

                     
Query: 402   tcgtagcc 409
             ||| ||||
Sbjct: 84316 tcgaagcc 84309
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                            
Query: 282      gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 341
                |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || |||||||  
Sbjct: 14268023 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 14267964

                                                                            
Query: 342      agagagtggtagtacacatagttgcacacgaaccgcccggcgtcatccgaaggcatcaca 401
                ||||| ||||| || ||||||||||| ||||| || || |||||||||||||||  ||||
Sbjct: 14267963 agagattggtaatagacatagttgcatacgaatcgaccagcgtcatccgaaggcgccaca 14267904

                        
Query: 402      tcgtagcc 409
                ||| ||||
Sbjct: 14267903 tcgaagcc 14267896
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 166     aactttacatcttccaggtcaa 187
               ||||||||||||||||||||||
Sbjct: 8184579 aactttacatcttccaggtcaa 8184558
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>dbj|AP005603.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1047A05
          Length = 157517

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 166    aactttacatcttccaggtcaa 187
              ||||||||||||||||||||||
Sbjct: 152890 aactttacatcttccaggtcaa 152869
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>dbj|AP004648.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1449_H02
          Length = 117860

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 166   aactttacatcttccaggtcaa 187
             ||||||||||||||||||||||
Sbjct: 17261 aactttacatcttccaggtcaa 17240
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>ref|XM_741731.1| Aspergillus fumigatus Af293 endo-1,4-beta-mannosidase (Afu7g01070)
           partial mRNA
          Length = 1434

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 314 cttgatgccgtgctgctccgc 334
           |||||||||||||||||||||
Sbjct: 693 cttgatgccgtgctgctccgc 673
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>gb|AC126605.4| Homo sapiens chromosome 15, clone RP11-606M5, complete sequence
          Length = 169125

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 538   aggtggcttcattcacagctt 558
             |||||||||||||||||||||
Sbjct: 62830 aggtggcttcattcacagctt 62810
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>gb|AC110291.6| Homo sapiens chromosome 15, clone RP11-379H8, complete sequence
          Length = 186812

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 538   aggtggcttcattcacagctt 558
             |||||||||||||||||||||
Sbjct: 99011 aggtggcttcattcacagctt 99031
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>gb|AC010724.6|AC010724 Homo sapiens BAC clone RP11-152F13 from 15, complete sequence
          Length = 157200

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 538  aggtggcttcattcacagctt 558
            |||||||||||||||||||||
Sbjct: 4428 aggtggcttcattcacagctt 4408
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>gb|AC040162.5| Homo sapiens chromosome 16 clone CTC-479C5, complete sequence
          Length = 217470

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 513    cacccaagctcatctgggcag 533
              |||||||||||||||||||||
Sbjct: 204042 cacccaagctcatctgggcag 204022
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>ref|NM_022675.1| Rattus norvegicus FK506 binding protein 1b (Fkbp1b), mRNA
          Length = 327

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 515 cccaagctcatctgggcagcg 535
           |||||||||||||||||||||
Sbjct: 209 cccaagctcatctgggcagcg 189
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>dbj|D86642.1| Rattus norvegicus mRNA for FK506-binding protein 12.6, complete cds
          Length = 327

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 515 cccaagctcatctgggcagcg 535
           |||||||||||||||||||||
Sbjct: 209 cccaagctcatctgggcagcg 189
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>ref|XM_523138.1| PREDICTED: Pan troglodytes similar to cytoplasmic polyadenylation
            element-binding protein (CPEB) (LOC467743), mRNA
          Length = 2097

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 538  aggtggcttcattcacagct 557
            ||||||||||||||||||||
Sbjct: 1273 aggtggcttcattcacagct 1254
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>ref|NM_030594.2| Homo sapiens cytoplasmic polyadenylation element binding protein 1
            (CPEB1), mRNA
          Length = 2777

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 538  aggtggcttcattcacagct 557
            ||||||||||||||||||||
Sbjct: 1194 aggtggcttcattcacagct 1175
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>ref|XM_874055.1| PREDICTED: Bos taurus similar to 40S ribosomal protein S17,
           transcript variant 3 (LOC514174), mRNA
          Length = 2032

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 538 aggtggcttcattcacagct 557
           ||||||||||||||||||||
Sbjct: 886 aggtggcttcattcacagct 867
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>ref|XM_864691.1| PREDICTED: Bos taurus similar to 40S ribosomal protein S17,
           transcript variant 2 (LOC514174), mRNA
          Length = 1970

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 538 aggtggcttcattcacagct 557
           ||||||||||||||||||||
Sbjct: 896 aggtggcttcattcacagct 877
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>gb|BC050629.1| Homo sapiens cytoplasmic polyadenylation element binding protein 1,
           mRNA (cDNA clone MGC:60106 IMAGE:6047179), complete cds
          Length = 2117

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 538 aggtggcttcattcacagct 557
           ||||||||||||||||||||
Sbjct: 984 aggtggcttcattcacagct 965
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>gb|AC007361.2| Homo sapiens BAC clone RP11-144P23 from 7, complete sequence
          Length = 36465

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   tttttctctccccttaaata 95
            ||||||||||||||||||||
Sbjct: 1325 tttttctctccccttaaata 1306
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>gb|BC035348.1| Homo sapiens cytoplasmic polyadenylation element binding protein 1,
           mRNA (cDNA clone MGC:34136 IMAGE:5195793), complete cds
          Length = 2080

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 538 aggtggcttcattcacagct 557
           ||||||||||||||||||||
Sbjct: 905 aggtggcttcattcacagct 886
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>ref|XM_500170.1| Yarrowia lipolytica CLIB122, YALI0A17578g predicted mRNA
          Length = 3702

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 390  gaaggcatcacatcgtagcc 409
            ||||||||||||||||||||
Sbjct: 2957 gaaggcatcacatcgtagcc 2938
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>emb|CR860287.1| Pongo pygmaeus mRNA; cDNA DKFZp459E225 (from clone DKFZp459E225)
          Length = 3328

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 538  aggtggcttcattcacagct 557
            ||||||||||||||||||||
Sbjct: 1118 aggtggcttcattcacagct 1099
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>emb|CR591339.1| full-length cDNA clone CS0DC009YL21 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1567

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 538 aggtggcttcattcacagct 557
           ||||||||||||||||||||
Sbjct: 499 aggtggcttcattcacagct 480
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>dbj|AK023265.1| Homo sapiens cDNA FLJ13203 fis, clone NT2RP3004504, highly similar
           to M.musculus mRNA for CPEB protein
          Length = 1923

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 538 aggtggcttcattcacagct 557
           ||||||||||||||||||||
Sbjct: 817 aggtggcttcattcacagct 798
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>gb|AF329403.1|AF329403 Homo sapiens cytoplasmic polyadenylation element-binding protein
           short form (CPEB1) mRNA, complete cds
          Length = 2443

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 538 aggtggcttcattcacagct 557
           ||||||||||||||||||||
Sbjct: 860 aggtggcttcattcacagct 841
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>gb|AF329402.1|AF329402 Homo sapiens cytoplasmic polyadenylation element-binding protein long
            form (CPEB1) mRNA, complete cds
          Length = 2777

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 538  aggtggcttcattcacagct 557
            ||||||||||||||||||||
Sbjct: 1194 aggtggcttcattcacagct 1175
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>emb|BX649159.1|HSM809311 Homo sapiens mRNA; cDNA DKFZp686F0129 (from clone DKFZp686F0129)
          Length = 4973

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 538  aggtggcttcattcacagct 557
            ||||||||||||||||||||
Sbjct: 2763 aggtggcttcattcacagct 2744
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>gb|AC102602.9| Mus musculus chromosome 9, clone RP23-381L11, complete sequence
          Length = 253504

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    cacatgcacaaacagagact 315
              ||||||||||||||||||||
Sbjct: 186958 cacatgcacaaacagagact 186977
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>emb|AL832156.1|HSM803463 Homo sapiens mRNA; cDNA DKFZp686F2014 (from clone DKFZp686F2014)
          Length = 2900

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 538 aggtggcttcattcacagct 557
           ||||||||||||||||||||
Sbjct: 685 aggtggcttcattcacagct 666
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>emb|AL954851.5| Zebrafish DNA sequence from clone CH211-280J3, complete sequence
          Length = 177221

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 286   agaagaggggcacatgcacaaacagaga 313
             ||||||||  ||||||||||||||||||
Sbjct: 18089 agaagaggttcacatgcacaaacagaga 18116
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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 390     gaaggcatcacatcgtagcc 409
               ||||||||||||||||||||
Sbjct: 1816198 gaaggcatcacatcgtagcc 1816179


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,897,202
Number of Sequences: 3902068
Number of extensions: 3897202
Number of successful extensions: 71212
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71029
Number of HSP's gapped (non-prelim): 183
length of query: 563
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 540
effective length of database: 17,143,297,704
effective search space: 9257380760160
effective search space used: 9257380760160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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