ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd23i08 |
|---|---|
| Clone Library Name | barley_pub |
>ST7R_ARATH (Q9LDU6) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) (Dwarf5 protein) Length = 432 Score = 110 bits (274), Expect = 4e-24 Identities = 46/73 (63%), Positives = 56/73 (76%) Frame = -1 Query: 580 SRHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMY 401 +RHFHY PEIL+AFFWTVPALF +F+ YFYVIFLT+ RC +KYGKYWK+Y Sbjct: 360 ARHFHYVPEILSAFFWTVPALFDNFLAYFYVIFLTLLLFDRAKRDDDRCRSKYGKYWKLY 419 Query: 400 CNRVPYRVVPGIY 362 C +V YR++PGIY Sbjct: 420 CEKVKYRIIPGIY 432
>DHCR7_MIMIV (Q5UQI4) Probable 7-dehydrocholesterol reductase (EC 1.3.1.21)| (7-DHC reductase) (Sterol delta-7-reductase) Length = 447 Score = 81.6 bits (200), Expect = 1e-15 Identities = 35/73 (47%), Positives = 47/73 (64%) Frame = -1 Query: 580 SRHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMY 401 SRH +Y +I+ + + + F+HF+PYFY +++TI RCS KYGKYWKMY Sbjct: 375 SRHMNYTGDIILSTAYCLACGFSHFIPYFYCVYMTILLVTRCLRDEQRCSRKYGKYWKMY 434 Query: 400 CNRVPYRVVPGIY 362 RVPYR +PGIY Sbjct: 435 TKRVPYRFIPGIY 447
>LBR_HUMAN (Q14739) Lamin-B receptor (Integral nuclear envelope inner membrane| protein) (LMN2R) Length = 615 Score = 73.6 bits (179), Expect = 4e-13 Identities = 29/72 (40%), Positives = 41/72 (56%) Frame = -1 Query: 577 RHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYC 398 RH +Y +++ A W++P F H +PYFY+I+ T+ C KYG W+ YC Sbjct: 544 RHPNYLGDLIMALAWSLPCGFNHILPYFYIIYFTMLLVHREARDEYHCKKKYGVAWEKYC 603 Query: 397 NRVPYRVVPGIY 362 RVPYR+ P IY Sbjct: 604 QRVPYRIFPYIY 615
>LBR_RAT (O08984) Lamin-B receptor (Integral nuclear envelope inner membrane| protein) (NBP60) Length = 620 Score = 72.8 bits (177), Expect = 7e-13 Identities = 30/72 (41%), Positives = 41/72 (56%) Frame = -1 Query: 577 RHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYC 398 RH +Y +++ A W++P F H +PYFYVI+ T +C KYG W+ YC Sbjct: 549 RHPNYLGDLIMALAWSLPCGFNHILPYFYVIYFTALLIHREARDEHQCRRKYGLAWEKYC 608 Query: 397 NRVPYRVVPGIY 362 RVPYR+ P IY Sbjct: 609 QRVPYRIFPYIY 620
>LBR_MOUSE (Q3U9G9) Lamin-B receptor (Integral nuclear envelope inner membrane| protein) Length = 626 Score = 72.4 bits (176), Expect = 9e-13 Identities = 29/72 (40%), Positives = 41/72 (56%) Frame = -1 Query: 577 RHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYC 398 RH +Y +++ A W++P F H +PYFY+I+ T +C KYG W+ YC Sbjct: 555 RHPNYLGDLIMALAWSLPCGFNHLLPYFYIIYFTALLIHREARDEHQCRRKYGLAWEKYC 614 Query: 397 NRVPYRVVPGIY 362 RVPYR+ P IY Sbjct: 615 QRVPYRIFPYIY 626
>LBR_PONPY (Q5R7H4) Lamin-B receptor (Integral nuclear envelope inner membrane| protein) Length = 615 Score = 70.9 bits (172), Expect = 3e-12 Identities = 28/73 (38%), Positives = 41/73 (56%) Frame = -1 Query: 580 SRHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMY 401 +RH +Y +++ A W++ F H +PYFY+I+ T+ C KYG W+ Y Sbjct: 543 ARHPNYLGDLIMALAWSLACGFNHILPYFYIIYFTMLLVHREARDEYHCKKKYGVAWEKY 602 Query: 400 CNRVPYRVVPGIY 362 C RVPYR+ P IY Sbjct: 603 CQRVPYRIFPYIY 615
>DHCR7_XENLA (Q7ZXH1) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 473 Score = 69.7 bits (169), Expect = 6e-12 Identities = 28/73 (38%), Positives = 46/73 (63%) Frame = -1 Query: 580 SRHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMY 401 +RH +Y +++ + + + F H +PYFY I++TI RCS+KYGK WK+Y Sbjct: 401 ARHLNYTGDLMGSLAYCLACGFDHLLPYFYFIYMTILLVHRCIRDEHRCSSKYGKDWKLY 460 Query: 400 CNRVPYRVVPGIY 362 + VPYR++PG++ Sbjct: 461 TSAVPYRLLPGLF 473
>ERG24_HUMAN (O76062) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) (Delta14-SR) (Transmembrane 7 superfamily member 2) (Another new gene 1 protein) (Putative sterol reductase SR-1) Length = 418 Score = 68.6 bits (166), Expect = 1e-11 Identities = 27/72 (37%), Positives = 42/72 (58%) Frame = -1 Query: 577 RHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYC 398 RH +Y +++ A W++P +H +PYFY+++ T +C KYG W+ YC Sbjct: 347 RHPNYLGDLIMALAWSLPCGVSHLLPYFYLLYFTALLVHREARDERQCLQKYGLAWQEYC 406 Query: 397 NRVPYRVVPGIY 362 RVPYR++P IY Sbjct: 407 RRVPYRIMPYIY 418
>DHCR7_XENTR (Q6P4M0) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 473 Score = 67.8 bits (164), Expect = 2e-11 Identities = 27/73 (36%), Positives = 45/73 (61%) Frame = -1 Query: 580 SRHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMY 401 +RH +Y +++ + + + F H +PYFY ++TI RCS+KYGK WK+Y Sbjct: 401 ARHLNYTGDLMGSLAYCLACGFDHLLPYFYFTYMTILLVHRCIRDEHRCSSKYGKDWKLY 460 Query: 400 CNRVPYRVVPGIY 362 + VPYR++PG++ Sbjct: 461 TDAVPYRLLPGLF 473
>DHCR7_RAT (Q9Z2Z8) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 471 Score = 64.3 bits (155), Expect = 2e-10 Identities = 26/73 (35%), Positives = 44/73 (60%) Frame = -1 Query: 580 SRHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMY 401 +RHF+Y +++ + + + H +PYFY+I++TI RC+ KYG+ W+ Y Sbjct: 399 ARHFNYTGDLMGSLAYCLACGGGHLLPYFYIIYMTILLTHRCLRDEHRCANKYGRDWERY 458 Query: 400 CNRVPYRVVPGIY 362 VPYR++PGI+ Sbjct: 459 VAAVPYRLLPGIF 471
>DHCR7_MOUSE (O88455) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 471 Score = 64.3 bits (155), Expect = 2e-10 Identities = 26/73 (35%), Positives = 44/73 (60%) Frame = -1 Query: 580 SRHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMY 401 +RHF+Y +++ + + + H +PYFY+I++TI RC+ KYG+ W+ Y Sbjct: 399 ARHFNYTGDLMGSLAYCLACGGGHLLPYFYIIYMTILLTHRCLRDEHRCANKYGRDWERY 458 Query: 400 CNRVPYRVVPGIY 362 VPYR++PGI+ Sbjct: 459 TAAVPYRLLPGIF 471
>LBR_CHICK (P23913) Lamin-B receptor| Length = 637 Score = 63.2 bits (152), Expect = 5e-10 Identities = 26/65 (40%), Positives = 34/65 (52%) Frame = -1 Query: 577 RHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYC 398 RH +Y +I+ A W++P F H +PYFYVI+ C KYG W+ YC Sbjct: 537 RHPNYLGDIIMALAWSLPCGFNHILPYFYVIYFICLLVHREARDEHHCKKKYGLAWERYC 596 Query: 397 NRVPY 383 RVPY Sbjct: 597 QRVPY 601
>DHCR7_BOVIN (Q5E9J5) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 475 Score = 63.2 bits (152), Expect = 5e-10 Identities = 26/73 (35%), Positives = 43/73 (58%) Frame = -1 Query: 580 SRHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMY 401 +RHF+Y +++ + + + H +PYFY+IF+ I RC+ KYG+ W+ Y Sbjct: 403 ARHFNYTGDLMGSLAYCLACGGGHLLPYFYIIFMAILLTHRCLRDEHRCANKYGRDWEHY 462 Query: 400 CNRVPYRVVPGIY 362 VPYR++PGI+ Sbjct: 463 TAAVPYRLLPGIF 475
>DHCR7_HUMAN (Q9UBM7) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) (Putative sterol reductase SR-2) Length = 475 Score = 62.8 bits (151), Expect = 7e-10 Identities = 25/73 (34%), Positives = 44/73 (60%) Frame = -1 Query: 580 SRHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMY 401 +RHF+Y +++ + + + H +PYFY+I++ I RC++KYG+ W+ Y Sbjct: 403 ARHFNYVGDLMGSLAYCLACGGGHLLPYFYIIYMAILLTHRCLRDEHRCASKYGRDWERY 462 Query: 400 CNRVPYRVVPGIY 362 VPYR++PGI+ Sbjct: 463 TAAVPYRLLPGIF 475
>ERG24_SCHPO (Q09195) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 424 Score = 61.2 bits (147), Expect = 2e-09 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = -1 Query: 580 SRHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMY 401 +RH +Y + + A+ W +PA F +PYFYV + + +C KYG+ W+ Y Sbjct: 352 ARHINYFGDWIMAWAWCLPAGFGSPIPYFYVAYFGVLLVHRNARDDHKCRVKYGEDWEKY 411 Query: 400 CNRVPYRVVPGIY 362 C V YR++P +Y Sbjct: 412 CKAVKYRIIPYVY 424
>DHCR7_BRARE (Q7SXF1) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC| reductase) (Sterol delta-7-reductase) Length = 478 Score = 59.3 bits (142), Expect = 8e-09 Identities = 25/73 (34%), Positives = 41/73 (56%) Frame = -1 Query: 580 SRHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMY 401 +RH +Y +++ + + + H +PYFY+I++TI RCS KYGK W+ Y Sbjct: 406 ARHMNYTGDLMGSLAYCLACGGNHLLPYFYIIYMTILLVHRCIRDEHRCSNKYGKDWERY 465 Query: 400 CNRVPYRVVPGIY 362 V YR++P I+ Sbjct: 466 TAAVSYRLLPNIF 478
>ERG24_ASCIM (P78575) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 430 Score = 54.3 bits (129), Expect = 2e-07 Identities = 25/73 (34%), Positives = 38/73 (52%) Frame = -1 Query: 580 SRHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMY 401 +RH +Y + + A+ + + F + YFYVI+ I +C KYGK W Y Sbjct: 358 ARHVNYFGDWIMAWSYCLTTGFNTPLTYFYVIYFGILLLHRDRRDEAKCREKYGKDWDRY 417 Query: 400 CNRVPYRVVPGIY 362 C V +R++PGIY Sbjct: 418 CKVVKWRIIPGIY 430
>ERG24_ARATH (Q9LDR4) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) (FACKEL protein) Length = 369 Score = 50.8 bits (120), Expect = 3e-06 Identities = 23/73 (31%), Positives = 40/73 (54%) Frame = -1 Query: 580 SRHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMY 401 +RH +Y +++ A +++P + +PYFY I+L I RC+ KY + W Y Sbjct: 297 ARHCNYLGDLMLALSFSLPCGISSPVPYFYPIYLLILLIWRERRDEVRCAEKYKEIWAEY 356 Query: 400 CNRVPYRVVPGIY 362 VP+R++P +Y Sbjct: 357 LRLVPWRILPYVY 369
>ERG4_YEAST (P25340) Delta(24(24(1)))-sterol reductase (EC 1.3.1.71) (Sterol| delta(24(28))-reductase) (C-24(28) sterol reductase) Length = 473 Score = 50.1 bits (118), Expect = 5e-06 Identities = 19/73 (26%), Positives = 31/73 (42%) Frame = -1 Query: 580 SRHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMY 401 +R HY + + W + F P+F+ +F + +C KYGK W Y Sbjct: 401 ARKIHYTADWTQSLVWALSCGFNSVFPWFFPVFFLVVLIHRAFRDQAKCKRKYGKDWDEY 460 Query: 400 CNRVPYRVVPGIY 362 C PY +P ++ Sbjct: 461 CKHCPYVFIPYVF 473
>ERG24_YEAST (P32462) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 438 Score = 47.8 bits (112), Expect = 2e-05 Identities = 19/73 (26%), Positives = 36/73 (49%) Frame = -1 Query: 580 SRHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMY 401 S+H +Y + L + W + F + Y+Y ++ +C KYG+ W+ Y Sbjct: 366 SQHINYFGDWLISLSWCLATWFQTPLTYYYSLYFATLLLHRQQRDEHKCRLKYGENWEEY 425 Query: 400 CNRVPYRVVPGIY 362 +VPY+++P +Y Sbjct: 426 ERKVPYKIIPYVY 438
>ERG24_SEPLY (O13597) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 512 Score = 45.1 bits (105), Expect = 1e-04 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = -1 Query: 499 YFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 362 YFY+++ I +C KYG +W+ YC V +R++PG+Y Sbjct: 467 YFYMLYFAILLIHRERRDEAKCRRKYGAHWEKYCQIVRWRILPGVY 512
>STS1_SCHPO (P36209) Delta(24(24(1)))-sterol reductase (EC 1.3.1.71) (Sterol| delta(24(28))-reductase) (C-24(28) sterol reductase) Length = 453 Score = 44.7 bits (104), Expect = 2e-04 Identities = 20/73 (27%), Positives = 30/73 (41%) Frame = -1 Query: 580 SRHFHYAPEILAAFFWTVPALFTHFMPYFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMY 401 +R HY + + W + F +PYFY F + +C KYG + Y Sbjct: 381 ARKIHYTADFFQSLSWALITGFQSPLPYFYPCFFFVVLVHRVSRDIKKCKAKYGADFDEY 440 Query: 400 CNRVPYRVVPGIY 362 C PY +P I+ Sbjct: 441 CRICPYLFIPYIF 453
>ERG24_NEUCR (P38670) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 490 Score = 43.1 bits (100), Expect = 6e-04 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = -1 Query: 499 YFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 362 YFY+++ I +CS KYG W+ Y V +R+VPGIY Sbjct: 445 YFYILYFAILLIHRDLRDDEKCSKKYGDDWEKYKKLVKWRIVPGIY 490
>ERG24_FUSSO (Q01447) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol| reductase) (Sterol C14-reductase) Length = 485 Score = 42.7 bits (99), Expect = 7e-04 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = -1 Query: 499 YFYVIFLTIXXXXXXXXXXXRCSTKYGKYWKMYCNRVPYRVVPGIY 362 YFY+++ I +C KYG+ W+ Y V YR++PGIY Sbjct: 440 YFYILYFAILLIHRERRDDDKCHRKYGEDWEKYRKIVRYRIIPGIY 485
>CML1_RAT (O35786) Chemokine receptor-like 1 (G-protein coupled receptor DEZ)| (G-protein coupled chemoattractant-like receptor) Length = 371 Score = 29.3 bits (64), Expect = 8.5 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Frame = +2 Query: 278 IVPGH*SGRESHQQLTCFLLVSCRV----HHSVNTRNNPVRYSVAVHLPVLAVLC*ASII 445 +V GH S SH ++TCF S HS + R +PV YS V + V LC + Sbjct: 173 LVFGHVS--TSHGKITCFNNFSLAAPEPFSHSTHPRTDPVGYSRHVAVTVTRFLC--GFL 228 Query: 446 IPL 454 IP+ Sbjct: 229 IPV 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,300,727 Number of Sequences: 219361 Number of extensions: 1194493 Number of successful extensions: 2828 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2784 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2828 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
